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Found 819 Software Packages (Results 1–100)

S-PLUS

Software Authors:   TIBCO Software Inc.
Cited in: 585 Publications (1994–2022)
Related Software: R; MEMSS; SAS; lme4; SemiPar; nlme; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

OpenFOAM

Software Authors:   OpenCFD Ltd (ESI Group)
Cited in: 554 Publications (2007–2022)
Related Software: FLUENT; Matlab; ANSYS-CFX; Spalart-Allmaras; GitHub; FEATFLOW; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

CGAL

Software Authors:   CGAL Editorial Board
Cited in: 381 Publications (2000–2023)
Related Software: LEDA; 2D triangulations; 2D Arrangement; Triangle; Boost; Qhull; …
Main Fields: Convex and discrete geometry (52-XX); Numerical analysis (65-XX); Computer science (68-XX)

eigs

Software Authors:   MathWorks, Inc.; Sorensen, Danny C.
Cited in: 326 Publications (1991–2021)
Related Software: IRAM; ARPACK; JDQZ; JDQR; Eigtool; Matlab; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Partial differential equations (35-XX); Numerical analysis (65-XX)

gss

Software Authors:   Chong Gu
Cited in: 320 Publications (1997–2023)
Related Software: R; SemiPar; gamair; fda (R); ElemStatLearn; GAMLSS; …
Main Fields: Functional analysis (46-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

Scatter Search

Software Authors:   Laguna, Manuel; Marti, Rafael
Cited in: 271 Publications (1999–2022)
Related Software: Tabu search; VRP; CPLEX; OR-Library; GRASP; PSPLIB; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

redbKIT

Software Authors:   Quarteroni, Alfio; Manzoni, Andrea; Negri, Federico
Cited in: 272 Publications (2014–2022)
Related Software: rbMIT; GitHub; Adam; FEniCS; Loewner; FreeFem++; …
Main Fields: Partial differential equations (35-XX); Statistics (62-XX); Numerical analysis (65-XX)

SVMlight

Software Authors:   Thorsten Joachims
Cited in: 210 Publications (2000–2022)
Related Software: LIBSVM; UCI-ml; SVMTorch; Matlab; GPDT; CONV_QP; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

IFISS

Software Authors:   H. Elman, A. Ramage, D. Silvester
Cited in: 261 Publications (2003–2023)
Related Software: Matlab; HSL_MI20; AGMG; PETSc; SparseMatrix; Trilinos; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Partial differential equations (35-XX); Calculus of variations and optimal control; optimization (49-XX)

CSparse

Software Authors:   Davis, Timothy A.
Cited in: 244 Publications (2006–2022)
Related Software: SparseMatrix; Matlab; symrcm; MUMPS; UMFPACK; PARDISO; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

Bonmin

Software Authors:   Bonami, Pierre; Biegler, Lorenz T.; Conn, Andrew R.; Cornuéjols, Gérard; Grossmann, Ignacio E.; Laird, Carl D.; Lee, Jon; Lodi, Andrea; Margot, François; Sawaya, Nicolas; Wächter, Andreas ​
Cited in: 217 Publications (1995–2022)
Related Software: Ipopt; CPLEX; SCIP; BARON; FilMINT; Gurobi; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX); Computer science (68-XX)

HYPLAS

Software Authors:   De Souza Neto EA, Perić D, Owen DRJ
Cited in: 205 Publications (1996–2022)
Related Software: ABAQUS; FEAPpv; Matlab; Trilinos; AceFEM; CutFEM; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

IRAM

Software Authors:   Sorensen, Danny C.
Cited in: 205 Publications (1991–2022)
Related Software: eigs; ARPACK; JDQZ; JDQR; TRLan; Harwell-Boeing sparse matrix collection; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

DGM

Software Authors:   Sirignano, Justin; Spiliopoulos, Konstantinos
Cited in: 204 Publications (2017–2023)
Related Software: Adam; TensorFlow; DeepXDE; PDE-Net; PyTorch; FPINNs; …
Main Fields: Partial differential equations (35-XX); Probability theory and stochastic processes (60-XX); Numerical analysis (65-XX)

UNITY

Software Authors:   K. Mani Chandy; Jayadev Misra
Cited in: 178 Publications (1988–2021)
Related Software: NQTHM; PVS; HOL; SPIN; LARCH; Rodin; …
Main Fields: Mathematical logic and foundations (03-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

REDLOG

Software Authors:   Andreas Dolzmann; Thomas Sturm; Weispfenning, Volker
Cited in: 166 Publications (1997–2022)
Related Software: QEPCAD; Maple; z3; REDUCE; RSOLVER; DISCOVERER; …
Main Fields: Mathematical logic and foundations (03-XX); Commutative algebra (13-XX); Computer science (68-XX)

rbMIT

Software Authors:   Phuong Huynh; Ngoc-Cuong Nguyen; A.T. Patera and G. Rozza
Cited in: 147 Publications (2007–2022)
Related Software: redbKIT; RBmatlab; DUNE; Loewner; deal.ii; Matlab; …
Main Fields: Partial differential equations (35-XX); Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX)

RKC

Software Authors:   Sommeijer, B.P.; Shampine, L.F.; Verwer, J.G.
Cited in: 130 Publications (1996–2023)
Related Software: RODAS; VODE; S-ROCK; IRKC; SERK2; Matlab; …
Main Fields: Ordinary differential equations (34-XX); Partial differential equations (35-XX); Numerical analysis (65-XX)

Wirtinger Flow

Software Authors:   Emmanuel Candes, Xiaodong Li, Mahdi Soltanolkotabi
Cited in: 129 Publications (2015–2022)
Related Software: PhaseLift; PhaseMax; GESPAR; SparsePR; CVX; PhaseCut; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Statistics (62-XX); Numerical analysis (65-XX)

BEMECH

Software Authors:   Gao, Xiao-Wei; Davies, Trevor G.
Cited in: 119 Publications (2002–2022)
Related Software: RIM_DOM.F90; GeoPDEs; BDEM; ISOGAT; Mfree2D; INSANE; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

OSL

Software Authors:   IBM
Cited in: 105 Publications (1992–2018)
Related Software: CPLEX; MINTO; MINOS; GAMS; LINDO; AMPL; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

Featherweight Java

Software Authors:   Igarashi, Atsushi; Pierce, Benjamin C.; Wadler, Philip
Cited in: 86 Publications (2001–2021)
Related Software: ML; MJ; JML; Scala; Eiffel; Creol; …
Main Fields: Mathematical logic and foundations (03-XX); Order, lattices, ordered algebraic structures (06-XX); Computer science (68-XX)

top88.m

Software Authors:   Andreassen, Erik; Clausen, Anders; Schevenels, Mattias; Lazarov, Boyan S.; Sigmund, Ole
Cited in: 89 Publications (2011–2022)
Related Software: top.m; Matlab; ESOFRAME; PolyTop; topopt_multi; PETSc; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

DAKOTA

Software Authors:   Sandia
Cited in: 67 Publications (2002–2022)
Related Software: Matlab; Python; UQLab; QUESO; Trilinos; Ipopt; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

PNEW

Software Authors:   Lukv san, Ladislav; Vlv cek, Jan
Cited in: 80 Publications (1996–2022)
Related Software: DGM; LDGB; NDA; GradSamp; QSM; SolvOpt; …
Main Fields: Ordinary differential equations (34-XX); Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX)

Chombo

Software Authors:   Colella, P., Graves, D.T., Ligocki, T.J., Martin, D.F., Modiano, D., Serafini, D.B., Straalen, B.V.; ANAG
Cited in: 65 Publications (2002–2022)
Related Software: PARAMESH; p4est; SAMRAI; Cactus; Carpet; FLASH; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

DPpackage

Software Authors:   Jara, A., Hanson, T. E., Quintana, F. A., Müller, P., Rosner, G. L.
Cited in: 65 Publications (2008–2022)
Related Software: R; BayesDA; CODA; R2WinBUGS; boa; BNPdensity; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

TAMC

Software Authors:   Giering, Ralf; Kaminski, Thomas
Cited in: 72 Publications (1998–2021)
Related Software: TAF; ADIFOR; ADOL-C; ADIC; Odyssee; L-BFGS; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX); Computer science (68-XX)

ADADELTA

Software Authors:   Matthew D. Zeiler
Cited in: 70 Publications (2017–2022)
Related Software: Adam; AdaGrad; RMSprop; ImageNet; AlexNet; TensorFlow; …
Main Fields: Partial differential equations (35-XX); Statistics (62-XX); Numerical analysis (65-XX)

RestoreTools

Software Authors:   Nagy, James G.; Palmer, Katrina; Perrone, Lisa
Cited in: 70 Publications (2003–2021)
Related Software: Regularization tools; IR Tools; UTV; LSQR; AIR tools; Matlab; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Statistics (62-XX); Numerical analysis (65-XX)

IETI

Software Authors:   S.K. Kleiss, C. Pechstein, B. Jüttler, S. Tomar
Cited in: 68 Publications (2012–2022)
Related Software: GeoPDEs; G+Smo; ISOGAT; PetIGA; Igatools; GitHub; …
Main Fields: Partial differential equations (35-XX); Approximations and expansions (41-XX); Numerical analysis (65-XX)

AUSMPW+

Software Authors:   Kyu Hong Kim; Chongam Kim; Oh-Hyun Rho
Cited in: 66 Publications (2001–2022)
Related Software: AUSM; HLLE; HE-E1GODF; FLICA-OVAP; RIEMANN; Athena; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

ftnonpar

Software Authors:   Davies, P.L.; Kovac, A.
Cited in: 67 Publications (2001–2019)
Related Software: KernSmooth; unbalhaar; SiZer; R; AWS; wbs; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Statistics (62-XX); Numerical analysis (65-XX)

Chaste

Software Authors:   Bernabeu, Miguel O.; Bordas, Rafel; Pathmanathan, Pras; Pitt-Francis, Joe; Cooper, Jonathan; Garny, Alan; Gavaghan, David J.; Rodriguez, Blanca; Southern, James A.; Whiteley, Jonathan P.
Cited in: 53 Publications (2009–2022)
Related Software: CellML; PhysiCell; PETSc; CellSys; Biocellion; Matlab; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

RANLUX

Software Authors:   F. James
Cited in: 53 Publications (1994–2020)
Related Software: PSEUDORAN; MersenneTwister; ACARRYPC; RANTAUMAR2; TestU01; GSL; …
Main Fields: Number theory (11-XX); Statistics (62-XX); Numerical analysis (65-XX)

ToolboxLS

Software Authors:   Ian Mitchell
Cited in: 54 Publications (2005–2022)
Related Software: top.m; Ellipsoidal Toolbox; Multivac; helperOC; ROC-HJ; MPT; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

WENO

Software Authors:   Carrillo, José A.; Gamba, Irene M.; Majorana, Armando; Shu, Chi-Wang
Cited in: 54 Publications (2003–2021)
Related Software: Vador; HE-E1GODF; GaAs-MESFET; HLLE; KIOPS; imexLNL; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

CHomP

Software Authors:   http://chomp.rutgers.edu/People.html
Cited in: 53 Publications (2006–2023)
Related Software: GAP; CAPD; Perseus; RedHom; Kenzo; Homology; …
Main Fields: Dynamical systems and ergodic theory (37-XX); Algebraic topology (55-XX); Manifolds and cell complexes (57-XX)

QUALEX

Software Authors:   Busygin, Stanislav
Cited in: 51 Publications (2002–2022)
Related Software: DIMACS; Max-AO; Tabu search; BHOSLIB; GQTPAR; MaxCliqueDyn; …
Main Fields: Combinatorics (05-XX); Numerical analysis (65-XX); Computer science (68-XX)

PDE2D

Software Authors:   Fitzgerald, Rosa M.; Sewell, Granville
Cited in: 49 Publications (1988–2020)
Related Software: ODEPACK; Matlab; nag; NAG; GitHub; EnKF; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

PolyBoRi

Software Authors:   Alexander Dreyer; Michael Brickenstein
Cited in: 48 Publications (2008–2021)
Related Software: SINGULAR; Magma; FGb; SageMath; CUDD; MiniSat; …
Main Fields: Mathematical logic and foundations (03-XX); Order, lattices, ordered algebraic structures (06-XX); Commutative algebra (13-XX)

GPDT

Software Authors:   Zanni, Luca; Serafini, Thomas; Zanghirati, Gaetano
Cited in: 48 Publications (2005–2022)
Related Software: CONV_QP; SVMlight; UCI-ml; LIBSVM; SVMTorch; TRON; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

BayesLogit

Software Authors:   Polson, Nicholas G.; Scott, James G.; Windle, Jesse
Cited in: 46 Publications (2013–2022)
Related Software: R; tsbridge; CODA; PRMLT; glasso; WinBUGS; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

PcGets

Software Authors:   Perez-Amaral, Teodosio; Gallo, Giampiero M.; White, Halbert
Cited in: 45 Publications (2000–2021)
Related Software: PcGive; Ox; ElemStatLearn; AIM@SHAPE; R; Stata; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)

Euk-mPLoc

Software Authors:   Chou KC, Shen HB
Cited in: 38 Publications (2007–2019)
Related Software: Cell-PLoc; Hum-mPLoc; Plant-mPLoc; Memtype-2L; Signal-CF; Euk-PLoc; …
Main Fields: Mathematical logic and foundations (03-XX); Statistics (62-XX); Computer science (68-XX)

Pse-in-One

Software Authors:   Liu, B.; Liu, F.; Wang, X.; Chen, J.; Fang, L.; Chou, K. -C.:
Cited in: 41 Publications (2015–2019)
Related Software: iRSpot-PseDNC; PseKNC; iPro54-PseKNC; pLoc-mEuk; iRNA-PseColl; pLoc-mAnimal; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

ROMS

Software Authors:   Haidvogel, D. B.; Arango, H.; Budgell, W. P.; Cornuelle, B. D.; Curchitser, E.; Di Lorenzo, E.; Fennel, K.; Geyer, W. R.; Hermann, A. J.; Lanerolle, L.; Levin, J.; McWilliams, J. C.; Miller, A. J.; Moore, A. M.; Powell, T. M.; Shchepetkin, A. F.; Sherwood, C. R.; Signell, R. P.; Warner, J. C.; Wilkin, J.
Cited in: 40 Publications (2008–2022)
Related Software: L-BFGS; EnKF; MPAS-Ocean; MIKE; SWAN; UTV; …
Main Fields: Partial differential equations (35-XX); Statistics (62-XX); Numerical analysis (65-XX)

ARACNE

Software Authors:   A. A. Margolin, I. Nemenman, K. Basso, C. Wiggins, G. Stolovitzky, R. D. Favera, A. Califano
Cited in: 34 Publications (2009–2022)
Related Software: minet; KEGG; glasso; SynTReN; GeneNetWeaver; R; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

iSNO-PseAAC

Software Authors:   Xu, Y.; Ding, J.; Wu, L. -Y.; Chou, K. -C.
Cited in: 39 Publications (2013–2019)
Related Software: iRSpot-PseDNC; propy; iRSpot-TNCPseAAC; iLoc-Hum; iNuc-PhysChem; Pse-in-One; …
Main Fields: Combinatorics (05-XX); Measure and integration (28-XX); Statistics (62-XX)

POMDPS

Software Authors:   Ross, S.; Pineau, J.; Paquet, S.; Chaib-Draa, B.
Cited in: 38 Publications (1998–2022)
Related Software: DESPOT; EGO; PRMLT; Clingo; Anglican; ProbLog; …
Main Fields: Mathematical logic and foundations (03-XX); Statistics (62-XX); Computer science (68-XX)

SINTEF

Software Authors:   Hasle, Geir (ed.); Lie, Knut-Andreas (ed.); Quak, Ewald (ed.)
Cited in: 37 Publications (2007–2022)
Related Software: Matlab; VRP; CPLEX; Cython; Plotly; Matplotlib; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

CHARMS

Software Authors:   Krysl, P.
Cited in: 34 Publications (2002–2020)
Related Software: ISOGAT; ABAQUS; Diffpack; COMSOL; Pcp2Nurb; NLopt; …
Main Fields: Combinatorics (05-XX); Numerical analysis (65-XX); Computer science (68-XX)

MEGA

Software Authors:   Kumar, S.; Nei, M.; Dudley, J.; Tamura, K.
Cited in: 28 Publications (2001–2021)
Related Software: MEGA4; PHYLIP; MrBayes; BLAST; PSI-BLAST; ClustalW; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Numerical analysis (65-XX)

NLEIGS

Software Authors:   Güttel S., Van Beeumen R., Meerbergen K., Michiels W.
Cited in: 35 Publications (2014–2023)
Related Software: NLEVP; RKToolbox; Matlab; SLEPc; JDQZ; JDQR; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Partial differential equations (35-XX); Numerical analysis (65-XX)

PicToSeek

Software Authors:   Gevers T, Smeulders A
Cited in: 26 Publications (2001–2010)
Related Software: VisualSEEk; NeTra; PicHunter; Chabot; SIMPLIcity; QBIC; …
Main Fields: Harmonic analysis on Euclidean spaces (42-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

PDB2PQR

Software Authors:   T. Dolinsky, J. Nielsen, A. McCammon, N. Baker
Cited in: 33 Publications (2006–2022)
Related Software: APBS; MIBPB; TABI; tabipb; CHARMM; PBEQ-Solver; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Optics, electromagnetic theory (78-XX)

LOBPCG

Software Authors:   Kressner, Daniel; Tobler, Christine
Cited in: 34 Publications (2001–2022)
Related Software: htucker; TT Toolbox; GitHub; lobpcg.m; ALEA; JDQZ; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Partial differential equations (35-XX); Approximations and expansions (41-XX)

mvBACON

Software Authors:   Billor, N., Hadi, A. S., Velleman, P. F.
Cited in: 31 Publications (2000–2021)
Related Software: R; robustbase; ROBPCA; ggplot2; rrcov; FSDA; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

DLV

Software Authors:   Grasso, Giovanni; Iiritano, Salvatore; Leone, Nicola; Ricca, Francesco
Cited in: 29 Publications (2001–2021)
Related Software: WASP; Gringo; Cmodels; Datalog; ASSAT; clasp; …
Main Fields: Mathematical logic and foundations (03-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

MESS

Software Authors:   Saak, J., Mena, H., Benner, P.
Cited in: 32 Publications (2012–2022)
Related Software: Matlab; RADI; MORLAB; LYAPACK; Loewner; Algorithm 432; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Partial differential equations (35-XX); Numerical analysis (65-XX)

PMIRKDC

Software Authors:   Muir, P.H.; Pancer, R.N.; Jackson, K.R.
Cited in: 32 Publications (1996–2020)
Related Software: MIRKDC; COLSYS; COLNEW; bvp4c; twpbvp; Matlab; …
Main Fields: Ordinary differential equations (34-XX); Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX)

SANET

Software Authors:   Okabe A, Okunuki K, Shiode S
Cited in: 23 Publications (2008–2022)
Related Software: spatstat; R; pyuvdata; spatial; spatstat.Knet; Algorithm 447; …
Main Fields: Combinatorics (05-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

CRIO

Software Authors:   Romy Shioda
Cited in: 30 Publications (2007–2022)
Related Software: UCI-ml; rpart; C4.5; randomForest; LIBSVM; ElemStatLearn; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Numerical analysis (65-XX)

iLoc-Virus

Software Authors:   Xiao, X.; Wu, Z. -C.; Chou, K. -C.
Cited in: 31 Publications (2011–2019)
Related Software: iLoc-Euk; iLoc-Hum; Cell-PLoc; iLoc-Gpos; iLoc-Plant; Plant-mPLoc; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

iNuc-PseKNC

Software Authors:   Guo, S.H.; Deng, E.Z.; Xu, L.Q.; Ding, H
Cited in: 31 Publications (2014–2019)
Related Software: iRSpot-PseDNC; iRSpot-TNCPseAAC; Pse-in-One; PseKNC; PseAAC-General; iCTX-Type; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

iRNA-PseColl

Software Authors:   Feng, P.; Ding, H.; Yang, H.; Chen, W.
Cited in: 31 Publications (2017–2019)
Related Software: iRSpot-EL; 2L-piRNA; pLoc-mEuk; pLoc-mAnimal; Pse-in-One; iRNAm5C-PseDNC; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

iRSpot-TNCPseAAC

Software Authors:   Wang-Ren Qiu, Xuan Xiao, Kuo-Chen Chou
Cited in: 31 Publications (2014–2019)
Related Software: iRSpot-PseDNC; iNuc-PseKNC; iSNO-PseAAC; iNuc-PhysChem; iPro54-PseKNC; PseKNC; …
Main Fields: Combinatorics (05-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

pSuc-Lys

Software Authors:   Jia, Jianhua; Liu, Zi; Xiao, Xuan; Liu, Bingxiang; Chou, Kuo-Chen
Cited in: 31 Publications (2016–2019)
Related Software: Pse-in-One; iRNA-PseColl; iSuc-PseOpt; iPro54-PseKNC; iRSpot-EL; iPTM-mLys; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

PUMA

Software Authors:   Fraunhofer SCAI; Marc Alexander Schweitzer, Albert Ziegenhagel
Cited in: 31 Publications (2003–2020)
Related Software: XFEM; mctoolbox; Matlab; FEniCS; UG; Trilinos; …
Main Fields: Partial differential equations (35-XX); Approximations and expansions (41-XX); Numerical analysis (65-XX)

SUPG

Software Authors:   Kler, Pablo A.; Dalcin, Lisandro D.; Paz, Rodrigo R.; Tezduyar, Tayfun E.
Cited in: 31 Publications (2012–2021)
Related Software: XFOIL; libMesh
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

NLPLIB

Software Authors:   Holmström, Kenneth; Björkman, Mattias
Cited in: 30 Publications (1999–2020)
Related Software: OPERA; TOMLAB; Matlab; EGO; SNOPT; UOBYQA; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Operations research, mathematical programming (90-XX)

SplinePak

Software Authors:   Larry L. Schumaker
Cited in: 30 Publications (2015–2022)
Related Software: pchip; ErresTools; SemiPar; BRENT; GaussQR; IPOL; …
Main Fields: Partial differential equations (35-XX); Approximations and expansions (41-XX); Operator theory (47-XX)

MINOTAUR

Software Authors:   Leyffer, S., Linderoth, J., Luedtke, J., Mahajan, A., Munson, T.
Cited in: 28 Publications (2014–2022)
Related Software: Bonmin; MINLPLib; SCIP; CPLEX; FilMINT; Ipopt; …
Main Fields: Partial differential equations (35-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

REVEAL

Software Authors:   Liang, S., Fuhrman, S., Somogyi, R
Cited in: 22 Publications (2003–2022)
Related Software: KEGG; R; BoolNet; E-CELL; GEPASI; Macaulay2; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

bfa

Software Authors:   Murray, Jared S.; Dunson, David B.; Carin, Lawrence; Lucas, Joseph E.
Cited in: 27 Publications (2013–2021)
Related Software: R; ADVI; Stan; MULTIMIX; loo; lavaan; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

LOWESS

Software Authors:   Cleveland, W.S.
Cited in: 25 Publications (1997–2018)
Related Software: R; mixsmsn; GSM; SAS; BayesDA; LMOMENTS; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

MALLBA

Software Authors:   Alba, E.; Almeida, F.; Blesa, M.; Cabeza, J.; Cotta, C.; Díaz, M.; Dorta, I.; Gabarró, J.; León, C.; Luna, J.; Moreno, L.; Pablos, C.; Petit, J.; Rojas, A.; Xhafa, F.
Cited in: 24 Publications (2002–2021)
Related Software: ParaDisEO; PICO; ECJ; OPT4J; EasyLocal++; EOlib; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

pLoc-mAnimal

Software Authors:   Cheng, X.; Zhao, S.G.; Lin, W.Z.
Cited in: 27 Publications (2017–2019)
Related Software: pLoc-mEuk; iRNA-PseColl; pLoc-mVirus; pLoc-mPlant; iRSpot-EL; Pse-in-One; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

QMC4PDE

Software Authors:   Nuyens, Dirk
Cited in: 27 Publications (2016–2022)
Related Software: sobol.cc; GitHub; ANOVAapprox; LSQR; Magic Point Shop; Adam; …
Main Fields: Partial differential equations (35-XX); Approximations and expansions (41-XX); Probability theory and stochastic processes (60-XX)

URDME

Software Authors:   Drawert, B., Engblom, S.,Hellander, A.
Cited in: 24 Publications (2009–2022)
Related Software: MesoRD; STEPS; Smoldyn; ReaDDy; Wavos; PySB; …
Main Fields: Partial differential equations (35-XX); Probability theory and stochastic processes (60-XX); Numerical analysis (65-XX)

Hum-mPLoc

Software Authors:   Shen HB, Chou KC
Cited in: 22 Publications (2007–2019)
Related Software: Euk-mPLoc; Cell-PLoc; Hum-PLoc; Euk-PLoc; Virus-ploc; Plant-mPLoc; …
Main Fields: Mathematical logic and foundations (03-XX); Statistics (62-XX); Computer science (68-XX)

iPPI-Esml

Software Authors:   Jia, J.; Liu, Z.; Xiao, X.; Liu, B.; Chou, K. -C.
Cited in: 26 Publications (2015–2019)
Related Software: Pse-in-One; iRSpot-PseDNC; iPro54-PseKNC; PseKNC; iPTM-mLys; 2L-piRNA; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

iPTM-mLys

Software Authors:   Qiu, W. -R.; Sun, B. -Q.; Xiao, X.; Xu, Z. -C.; Chou, K. -C.
Cited in: 26 Publications (2016–2019)
Related Software: Pse-in-One; iRNA-PseColl; pLoc-mAnimal; pSuc-Lys; pLoc-mEuk; iRSpot-PseDNC; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

NumericalAlgebraicGeometry

Software Authors:   Leykin, Anton
Cited in: 24 Publications (2011–2023)
Related Software: Bertini; Macaulay2; PHCpack; NAG4M2; HOM4PS; alphaCertified; …
Main Fields: Commutative algebra (13-XX); Algebraic geometry (14-XX); Numerical analysis (65-XX)

PICO

Software Authors:   Eckstein, Jonathan; Phillips, Cynthia A.; Hart, William E.
Cited in: 25 Publications (2001–2019)
Related Software: SYMPHONY; ALPS; MIPLIB; MINTO; ABACUS; CHiPPS; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

SALBPGen

Software Authors:   A Otto, C Otto, A Scholl
Cited in: 26 Publications (2012–2022)
Related Software: 2-ANTBAL; VRPSolver; BaPCod; SCIP; CPLEX; TUALB; …
Main Fields: Combinatorics (05-XX); Operations research, mathematical programming (90-XX)

GPstuff

Software Authors:   BECS Bayes group, Aalto University; Jarno Vanhatalo, Jaakko Riihimäki, Jouni Hartikainen, Pasi Jylänki, Ville Tolvanen, and Aki Vehtari
Cited in: 22 Publications (2012–2022)
Related Software: GPML; GPy; Python; Matlab; GPflow; TensorFlow; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

2L-piRNA

Software Authors:   Liu, B.; Yang, F.; Chou, K.-C.
Cited in: 25 Publications (2017–2019)
Related Software: iRNA-PseColl; iRSpot-EL; pLoc-mEuk; Pse-in-One; pLoc-mAnimal; iDNA6mA-PseKNC; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

Stanford Tagger

Software Authors:   Kristina Toutanova
Cited in: 18 Publications (2009–2022)
Related Software: WordNet; word2vec; TnT; TreeTagger; BLEU; Penn Treebank; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

MOLPRO

Software Authors:   H.-J. Werner, P. J. Knowles; AJ Stone, R Tarroni, T Thorsteinsson
Cited in: 20 Publications (2001–2022)
Related Software: GAUSSIAN; Maple; SciPy; Matlab; Scilab; CRYSCOR; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Quantum theory (81-XX)

PERMIX

Software Authors:   Talebi, Hossein; Silani, Mohammad; Bordas, Stéphane P.A.; Kerfriden, Pierre; Rabczuk, Timon
Cited in: 24 Publications (2014–2022)
Related Software: XFEM; CutFEM; FEniCS; Matlab; ABAQUS; hypre; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

SLRA

Software Authors:   Usevich, Konstantin; Markovsky, Ivan
Cited in: 23 Publications (2012–2021)
Related Software: GPGCD; Daisy; MultRoot; TSDL; IDENT; GSL; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Statistics (62-XX); Numerical analysis (65-XX)

SparseM

Software Authors:   Koenker, R., Ng, P.
Cited in: 16 Publications (2004–2020)
Related Software: R; Matrix; SPARSKIT; network; sna; statnet; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

HILBERT

Software Authors:   Aurada M, Ebner M, Ferraz-Leite S, Mayr M, Goldenits P, Karkulik M, et al.
Cited in: 23 Publications (2012–2021)
Related Software: Matlab; BEM++; p1afem; mfem; BETL; MPC; …
Main Fields: Partial differential equations (35-XX); Integral equations (45-XX); Numerical analysis (65-XX)

ITSM2000

Software Authors:   Brockwell, Peter J.; Davis, Richard A.
Cited in: 20 Publications (2016–2022)
Related Software: itsmr; astsa; GitHub; Python; Matlab; sapa; …
Main Fields: Dynamical systems and ergodic theory (37-XX); Statistics (62-XX); Operations research, mathematical programming (90-XX)

pLoc-mGneg

Software Authors:   Cheng, X.; Xiao, X.; Chou, K.-C.
Cited in: 23 Publications (2018–2019)
Related Software: pLoc-mEuk; pLoc-mAnimal; pLoc-mPlant; iRSpot-EL; iPromoter-2L; iRNA-PseColl; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

pLoc-mVirus

Software Authors:   Cheng, X.; Xiao, X.
Cited in: 23 Publications (2017–2019)
Related Software: pLoc-mAnimal; pLoc-mPlant; pLoc-mEuk; iRNA-PseColl; Pse-in-One; pLoc-mGneg; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

SDPEN

Software Authors:   G. Liuzzi, S. Lucidi, M. Sciandrone, K. Truemper
Cited in: 23 Publications (2010–2022)
Related Software: DFL; NOMAD; DFBOX_IMPR; SDBOX; DFLBOX; OrthoMADS; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX); Computer science (68-XX)

EDA

Software Authors:   Martinez, Wendy L.; Martinez, Angel R.; Solka, Jeffrey L.
Cited in: 20 Publications (2005–2021)
Related Software: Matlab; smacof; k-means++; PRMLT; SVM; SHOGUN; …
Main Fields: General and overarching topics; collections (00-XX); Number theory (11-XX); Statistics (62-XX)

hgm R

Software Authors:   Nakayama, Hiromasa; Nishiyama, Kenta; Noro, Masayuki; Ohara, Katsuyoshi; Sei, Tomonari; Takayama, Nobuki; Takemura, Akimichi
Cited in: 21 Publications (2011–2022)
Related Software: Risa/Asir; R; HolonomicFunctions; DLMF; Kan; Macaulay2; …
Main Fields: Associative rings and algebras (16-XX); Several complex variables and analytic spaces (32-XX); Special functions (33-XX)