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Found 59 Software Packages (Results 1–59)

top88.m

Software Authors:   Andreassen, Erik; Clausen, Anders; Schevenels, Mattias; Lazarov, Boyan S.; Sigmund, Ole
Referenced in: 89 Publications (2011–2022)
Related Software: top.m; Matlab; ESOFRAME; PolyTop; PETSc; topopt_multi; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

CHomP

Software Authors:   http://chomp.rutgers.edu/People.html
Referenced in: 51 Publications (2006–2021)
Related Software: GAP; CAPD; Perseus; RedHom; Kenzo; Homology; …
Main Fields: Algebraic geometry (14-XX); Dynamical systems and ergodic theory (37-XX); Algebraic topology (55-XX)

Regina

Software Authors:   B.A. Burton, R. Budney, W. Pettersson, et al.
Referenced in: 46 Publications (2004–2022)
Related Software: SnapPy; SnapPea; GitHub; SageMath; Normaliz; simpcomp; …
Main Fields: Combinatorics (05-XX); Algebraic geometry (14-XX); Convex and discrete geometry (52-XX)

Gudhi

Software Authors:   INRIA; Clement Maria; Jean-Daniel Boissonnat; Marc Glisse; Mariette Yvinec
Referenced in: 40 Publications (2014–2022)
Related Software: PHAT; Dionysus; javaPlex; Ripser; TDA; Perseus; …
Main Fields: Algebraic topology (55-XX); Statistics (62-XX); Numerical analysis (65-XX)

Pregel

Software Authors:   Malewicz, G., Austern, M.H., Bik, A.J., Dehnert, J.C., Horn, I., Leiser, N., Czajkowski, G.
Referenced in: 37 Publications (2010–2022)
Related Software: GraphLab; MapReduce; Hadoop; Giraph; PowerGraph; GraphX; …
Main Fields: Combinatorics (05-XX); Numerical analysis (65-XX); Computer science (68-XX)

ARACNE

Software Authors:   A. A. Margolin, I. Nemenman, K. Basso, C. Wiggins, G. Stolovitzky, R. D. Favera, A. Califano
Referenced in: 34 Publications (2009–2022)
Related Software: minet; KEGG; glasso; SynTReN; GeneNetWeaver; R; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

UMAP

Software Authors:   Leland McInnes, John Healy, James Melville
Referenced in: 32 Publications (2020–2022)
Related Software: t-SNE; Scikit; word2vec; Python; LargeVis; UCI-ml; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

APOGEE

Software Authors:   Ruth Misener, Jeffrey P. Thompson, Christodoulos A. Floudas
Referenced in: 36 Publications (2012–2021)
Related Software: GloMIQO; SCIP; BARON; CPLEX; GAMS; ANTIGONE; …
Main Fields: Combinatorics (05-XX); Linear and multilinear algebra; matrix theory (15-XX); Numerical analysis (65-XX)

FELSOS

Software Authors:   Smolianski A
Referenced in: 25 Publications (2005–2021)
Related Software: SLIC; PROST; Gerris; Cimlib; FEATFLOW; Gmsh; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

insulate

Software Authors:   Seidel, Raimund; Wolpert, Nicola
Referenced in: 24 Publications (2005–2021)
Related Software: ISOLATE; Lgp; Maple; Axel; CGAL; HOM4PS; …
Main Fields: Commutative algebra (13-XX); Algebraic geometry (14-XX); Numerical analysis (65-XX)

topopt_multi

Software Authors:   Tavakoli, Rouhollah
Referenced in: 23 Publications (2014–2022)
Related Software: top.m; Matlab; top88.m; PetIGA; PETSc; PolyTop; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX); Computer science (68-XX)

Parsol

Software Authors:   Jakusšev, Alexander; Čiegis, Raimondas; Laukaitytė, Inga; Trofimov, Vyacheslav
Referenced in: 19 Publications (2005–2017)
Related Software: PETSc; BALaser; Diffpack; MITK; ParaView; FREEFLOW; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

GrAL

Software Authors:   Berti, G.
Referenced in: 19 Publications (2000–2013)
Related Software: FEniCS; Trilinos; Boost; DOLFIN; PETSc; deal.ii; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Mechanics of deformable solids (74-XX)

MPICH2

Software Authors:   Gropp, William
Referenced in: 7 Publications (2002–2016)
Related Software: OpenMPI; Matlab; NAS Parallel Benchmarks; MPI; ParMETIS; Mathematica; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Mechanics of particles and systems (70-XX)

MMD GAN

Software Authors:   Chun-Liang Li, Wei-Cheng Chang, Yu Cheng, Yiming Yang, Barnabás Póczos
Referenced in: 12 Publications (2019–2022)
Related Software: Wasserstein GAN; Adam; ImageNet; CIFAR; StyleGAN; InfoGAN; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Statistical mechanics, structure of matter (82-XX)

PyOP2

Software Authors:   Imperial College London; Rathgeber F, Markall GR, Mitchell L, Loriant N, Ham DA, Bertolli C, Kelly PH
Referenced in: 10 Publications (2016–2020)
Related Software: Firedrake; FEniCS; PETSc; petsc4py; COFFEE; TSFC; …
Main Fields: Partial differential equations (35-XX); Global analysis, analysis on manifolds (58-XX); Numerical analysis (65-XX)

Hemelb

Software Authors:   Mazzeo, M.D.; Coveney, P.V.
Referenced in: 12 Publications (2008–2021)
Related Software: MUPHY; Palabos; LUDWIG; OpenLB; CUDA; Spalart-Allmaras; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Fluid mechanics (76-XX)

ANODEs

Software Authors:   Emilien Dupont, Arnaud Doucet, Yee Whye Teh
Referenced in: 10 Publications (2020–2022)
Related Software: torchdiffeq; FFJORD; PyTorch; Glow; DifferentialEquations.jl; DiffEqFlux; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

knotkit

Software Authors:   C. Seed
Referenced in: 9 Publications (2014–2021)
Related Software: GitHub; SnapPy; Knot Atlas; khoca; MathOverflow; SageMath; …
Main Fields: Algebraic geometry (14-XX); Algebraic topology (55-XX); Manifolds and cell complexes (57-XX)

MGS

Software Authors:   Giavitto, J.-L.; Michel, O.
Referenced in: 9 Publications (2001–2016)
Related Software: HOCL; NESL; Maude; HexaChord; PORGY; BioSPI; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Computer science (68-XX)

jHoles

Software Authors:   Binchi, Jacopo; Merelli, Emanuela; Rucco, Matteo; Petri, Giovanni; Vaccarino, Francesco
Referenced in: 7 Publications (2014–2021)
Related Software: javaPlex; PHAT; Perseus; Gudhi; Ripser; GitHub; …
Main Fields: Algebraic topology (55-XX); Numerical analysis (65-XX); Quantum theory (81-XX)

fKenzo

Software Authors:   Heras, J.; Pascual, V.; Rubio, J.; Sergeraert, F.
Referenced in: 6 Publications (2011–2018)
Related Software: Kenzo; HAP; GAP; OpenMath; SCSCP; ACL2; …
Main Fields: Algebraic topology (55-XX); Computer science (68-XX)

DTHB3D_Reg

Software Authors:   Pawar, Aishwarya; Zhang, Yongjie Jessica; Anitescu, Cosmin; Jia, Yue; Rabczuk, Timon
Referenced in: 5 Publications (2018–2021)
Related Software: GitHub; BigNeuron; Matlab; BrainWeb; Mimics; TetGen
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

GRAND

Software Authors:   Zegard, T.; Paulino, GH
Referenced in: 5 Publications (2017–2022)
Related Software: PolyTop; Matlab; Stress_3D_Sensitivity; PolyMat; FEniCS; PETSc; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

COCO-GAN

Software Authors:   Chieh Hubert Lin, Chia-Che Chang, Yu-Sheng Chen, Da-Cheng Juan, Wei Wei, Hwann-Tzong Chen
Referenced in: 1 Publication (2021)
Related Software: LSUN; Python; Adam; IntroVAE; Matterport3D; Wasserstein GAN; …
Main Fields: Computer science (68-XX)

KDTREE

Software Authors:   Matthew B. Kennel
Referenced in: 3 Publications (2011–2014)
Related Software: PIC-MCC; hypre; SEPRAN
Main Fields: Numerical analysis (65-XX); Fluid mechanics (76-XX); Statistical mechanics, structure of matter (82-XX)

NIMEFI

Software Authors:   Ruyssinck, J., Huynh-Thu, V.A., Geurts, P., Dhaene, T., Demeester, P., Saeys, Y.
Referenced in: 2 Publications (2017–2020)
Related Software: Espresso; InterpretML; Alibi Explain; auto-sklearn; dalex; AI Explainability 360; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

npFEM

Software Authors:   Christos Kotsalos; Jonas Latt; Bastien Chopard
Referenced in: 2 Publications (2019–2021)
Related Software: Palabos; Hemocell; Grasshopper; Rhinoceros; ShapeOp; Spalart-Allmaras; …
Main Fields: Computer science (68-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

SHGO

Software Authors:   Endres, Stefan C.; Sandrock, Carl; Focke, Walter W.
Referenced in: 3 Publications (2018–2022)
Related Software: Python; SciPy; D3M; PINNsNTK; MgNet; DFVLR-SQP; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Fluid mechanics (76-XX)

SpaceGroupIrep

Software Authors:   Gui-Bin Liu, Miao Chu, Zeying Zhang, Zhi-Ming Yu, Yugui Yao
Referenced in: 1 Publication (2010)
Related Software: ISOTROPY; ABINIT; Quantum Espresso; Mathematica; PythTB; Z2pack; …
Main Fields: Group theory and generalizations (20-XX); Geometry (51-XX); Quantum theory (81-XX)

ANIMO

Software Authors:   Schivo S, Scholma J, van der Vet PE et al
Referenced in: 2 Publications (2014–2018)
Related Software: STRINGdb; PRS; NET-SYNTHESIS; SMPDB; PathCellNet; GNAT; …
Main Fields: Biology and other natural sciences (92-XX)

cBrother

Software Authors:   Fang Fang, Jing Ding, Vladimir N. Minin, Marc A. Suchard, Karin S. Dorman
Referenced in: 1 Publication (2010)
Related Software: BayesDA; PAML; fastDNAml
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

CTL

Software Authors:   Lewis R
Referenced in: 2 Publications (2019–2021)
Related Software: Ripser; GitHub; jPlex; Dionysus; PHAT; javaPlex; …
Main Fields: Algebraic topology (55-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

loggle

Software Authors:   Yang, Jilei; Peng, Jie
Referenced in: 2 Publications (2020–2021)
Related Software: glasso; KELLER; igraph; R
Main Fields: Statistics (62-XX); Operations research, mathematical programming (90-XX)

PhyloBayes MPI

Software Authors:   Lartillot N, Rodrigue N, Stubbs D et a
Referenced in: 2 Publications (2014–2017)
Related Software: SplitsTree; MrBayes; Tracer; MulRF; iGTP; TOPAL; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)

Polytop

Software Authors:   Brake, Danielle A.; Hauenstein, Jonathan D.; Regan, Margaret H.
Referenced in: 2 Publications (2018)
Related Software: Bertini_real; javaPlex; Bertini; ATAME; Axl; Francy; …
Main Fields: General and overarching topics; collections (00-XX); Algebraic geometry (14-XX); Numerical analysis (65-XX)

Rainbowfish

Software Authors:   Almodaresi, Fatemeh; Pandey, Prashant; Patro, Rob
Referenced in: 2 Publications (2017–2022)
Related Software: BWA; SplitMEM; VARI; GATB; SDSL; GitHub; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

Topoprocessor

Software Authors:   P. Dłotko, B. Kapidani, R. Specogna
Referenced in: 2 Publications (2018–2022)
Related Software: GitHub; GeoPDEs
Main Fields: Numerical analysis (65-XX); Optics, electromagnetic theory (78-XX)

TreeBoost.MH

Software Authors:   Esuli, Andrea; Fagni, Tiziano; Sebastiani, Fabrizio
Referenced in: 0 Publications
Related Software: Mahout; MLlib; SHOGUN; spaCy; OpenNLP; SentiWordNet; …
Main Fields:

ABS-NET

Software Authors:   Palmskog, Karl; Dam, Mads; Lundblad, Andreas; Jafari, Ali
Referenced in: 1 Publication (2013)
Related Software: KryoNet; ABS; Chord; Erlang; Maude
Main Fields: Computer science (68-XX)

ATB

Software Authors:   Alpeshkumar K. Malde, Le Zuo, Matthew Breeze, Martin Stroet, David Poger, Pramod C. Nair, Chris Oostenbrink, Alan E. Mark
Referenced in: 1 Publication (2018)
Related Software: ZINC; charge_assign; COIN-OR
Main Fields: Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

BETAWARE

Software Authors:   Castrense Savojardo, Piero Fariselli, Rita Casadio
Referenced in: 1 Publication (2015)
Related Software: OP-ELM
Main Fields: Statistics (62-XX); Computer science (68-XX)

cityseer

Software Authors:   Gareth D. Simons
Referenced in: 0 Publications
Related Software: ArcGIS; Graph-tool; Scikit; Numba; NumPy; NetworkX; …
Main Fields:

CompuTop

Software Authors:   N.M. Dunfield
Referenced in: 1 Publication (2017)
Related Software: Minksum; VisPak; Trelis; GeoCalcLib; VaryLab; Detri; …
Main Fields: Combinatorics (05-XX); Geometry (51-XX); Convex and discrete geometry (52-XX)

COVAIN

Software Authors:   Sun X.; Weckwerth W.
Referenced in: 1 Publication (2014)
Related Software: Algorithm 432; KEGGtranslator; KEGG; Sbmltoolbox; SDE Toolbox
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

GEOMETRICA

Software Authors:   J.-D. Boissonnat et al.
Referenced in: 1 Publication (2017)
Related Software: Minksum; VisPak; Trelis; GeoCalcLib; VaryLab; Detri; …
Main Fields: Combinatorics (05-XX); Geometry (51-XX); Convex and discrete geometry (52-XX)

graal.lib

Software Authors:   M. S. Marais; Y. Ren
Referenced in: 1 Publication (2015)
Related Software: SINGULAR
Main Fields: Commutative algebra (13-XX); Algebraic geometry (14-XX)

LARLIB

Software Authors:   Francesco Furiani, Giulio Martella, Alberto Paoluzzi
Referenced in: 0 Publications
Related Software: Algorithm 447; CGAL; TensorFlow; Julia
Main Fields:

liteITD

Software Authors:   Victoria M., Querin O.M., Díaz C., Martí P.
Referenced in: 0 Publications
Related Software: MeshLab; k-Wave; PolyMesher; APDL; Matlab; IbIPP
Main Fields:

MAZE

Software Authors:   Dexter D. Antonio, Jiawei Guo, Sam J. Holton, Ambarish R. Kulkarni
Referenced in: 0 Publications
Related Software: GPAW; LAMMPS; ASE; NumPy; Python; Scikit
Main Fields:

NetMix2

Software Authors:   Chitra, Uthsav; Park, Tae Yoon; Raphael, Benjamin J.
Referenced in: 1 Publication (2022)
Related Software: ModuleDiscoverer; SigMod; DOMINO; NetSig; DIAMOnD; SANTA; …
Main Fields: Biology and other natural sciences (92-XX)

PREMER

Software Authors:   Villaverde, A.F.; Becker, K.; Banga, J.R.
Referenced in: 1 Publication (2017)
Related Software: GeneNetWeaver; hiPathDB; DREAMTools; Clingo
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

Rcpi

Software Authors:   D.-S. Cao, N. Xiao, Q.-S. Xu, A.F. Chen
Referenced in: 1 Publication (2021)
Related Software: MOLS; NanoBRIDGES; rcdk; rJava; R
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

SDTNBI

Software Authors:   Wu, Z.; Cheng, F.; Li, J.; Li, W.; Liu, G.; Tang, Y.
Referenced in: 1 Publication (2017)
Related Software: ClusterViz; DNRLMF-MDA; STRING; DrugE-Rank; DrugBank; BindingDB; …
Main Fields: Biology and other natural sciences (92-XX); Systems theory; control (93-XX)

SimplicialVIEW

Software Authors:   Coutinho, Murilo G.; Jonckheere, Edmond A.
Referenced in: 1 Publication (1997)
Related Software:
Main Fields: Numerical analysis (65-XX)

StarBEAST2

Software Authors:   Ogilvie, H.A., Bouckaert, R.R., Drummond, A.J.
Referenced in: 1 Publication (2019)
Related Software: S-Cluster++; SplitsTree; MrBayes; MCScanX; CYNTENATOR; i-ADHoRe; …
Main Fields: General and overarching topics; collections (00-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

VisExpA

Software Authors:   Dimitrios Tsiotas; Avraam Charakopoulos
Referenced in: 0 Publications
Related Software: Matlab
Main Fields:

VXDL

Software Authors:   Koslovski, Guilherme Piegas; Primet, Pascale Vicat-Blanc; Char~ao, Andrea Schwertner
Referenced in: 1 Publication (2009)
Related Software: NAS Parallel Benchmarks; MPI/MPICH
Main Fields: Computer science (68-XX)

XMOF2D

Software Authors:   Kikinzon E.
Referenced in: 1 Publication (2018)
Related Software: ShaPo; Jali; GitHub; CutFEM; MMMFEM; Thrust
Main Fields: Numerical analysis (65-XX); Fluid mechanics (76-XX)