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Found 28 Software Packages (Results 1–28)

spBayes

Software Authors:   Andrew O. Finley, Sudipto Banerjee, Bradley P. Carlin
Cited in: 372 Publications (2004–2022)
Related Software: R; GMRFLib; BayesDA; FRK; WinBUGS; CODA; …
Main Fields:

LIPSOL

Software Authors:   Zhang, Yin; Greg Sweriduk
Cited in: 83 Publications (1997–2022)
Related Software: PCx; Matlab; Mosek; HOPDM; LOQO; McIPM; …
Main Fields:

RAxML

Software Authors:   Stamatakis, Alexandros; Ludwig, Thomas; Meier, Harald
Cited in: 30 Publications (2004–2022)
Related Software: MrBayes; BEAST; PAUP*; fastDNAml; R; PHYLIP; …
Main Fields: (68U99-XX); (68W10-XX); (92D15-XX)

HMMER

Software Authors:   Robert D. Finn, Jody Clements, Sean R. Eddy
Cited in: 12 Publications (2006–2019)
Related Software: ClustalW; UniProt; MUSCLE; MAFFT; R; MrBayes; …
Main Fields: Biology and other natural sciences (92-XX); Probability theory and stochastic processes (60-XX); Computer science (68-XX)

BARD

Software Authors:   Micah Altman, Michael P. McDonald
Cited in: 6 Publications (2011–2022)
Related Software: GerryChain; MIPLIB; Fairmandering; Gurobi; GitHub; SCIP-Jack; …
Main Fields: Statistics (62-XX); Operations research, mathematical programming (90-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

COBRApy

Software Authors:   Ali Ebrahim, Joshua A Lerman, Bernhard O Palsson, Daniel R Hyduke
Cited in: 2 Publications (2015–2019)
Related Software: METRADE; DFBAlab; MoNeRe; COBRA Toolbox; fastGapFill; meneco; …
Main Fields: Computer science (68-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

CosmoHammer

Software Authors:   Joël Akeret, Sebastian Seehars, Adam Amara, Alexandre Refregier, André Csillaghy
Cited in: 2 Publications (2017–2021)
Related Software: HOPE; COSMICS; CosmoSpec; iCosmo; CMBEASY; Python; …
Main Fields:

MultiPhyl

Software Authors:   Keane TM, Naughton TJ, McInerney JO
Cited in: 2 Publications (2010–2015)
Related Software: PAML; apTreeshape; R; ACME; ClustalW; Algorithm 97; …
Main Fields:

StateTrace

Software Authors:   Prince, M.; Hawkins, G.; Love, J.; Heathcote, A.
Cited in: 3 Publications (2016–2019)
Related Software: QSIMVN; QTest; rPorta; PORTA; isotone; R
Main Fields:

SuperFine

Software Authors:   Swenson, M., Suri, R., Linder, C., Warnow, T.
Cited in: 3 Publications (2013–2019)
Related Software: iGTP; MrBayes; NINJA; Quartets MaxCut; Rec-I-DCM3; DACTAL; …
Main Fields:

BIVAS

Software Authors:   Cai, Mingxuan; Dai, Mingwei; Ming, Jingsi; Peng, Heng; Liu, Jin; Yang, Can
Cited in: 2 Publications (2020–2022)
Related Software: PRMLT; EMVS; IMDB; qqman; GCTA; ANNOVAR; …
Main Fields:

clustRviz

Software Authors:   Weylandt, Michael; Nagorski, John; Allen, Genevera I.
Cited in: 2 Publications (2020–2021)
Related Software: clusterpath; ConvexLAR; t-SNE; k-means++; DEseq
Main Fields:

DNSlab

Software Authors:   Vuorinen, V.; Keskinen, K.
Cited in: 2 Publications (2016–2022)
Related Software: MCTDH; iFEM; Matlab; Octave; Oasis; FDMRP; …
Main Fields: (76F65-XX); (76-04-XX); (76M22-XX)

Par-EXPDE

Software Authors:   Linke, Alexander; Pflaum, Christoph; Bergen, Ben
Cited in: 2 Publications (2003)
Related Software: EXPDE; gridlib
Main Fields: (68W30-XX); (65Y10-XX); (68M99-XX)

SEPLIB

Software Authors:   Karrenbach, Martin; Knopf, Petra; Jacob, Matthias
Cited in: 2 Publications (1999)
Related Software: SEPlib3d; SEPlib
Main Fields: (68W10-XX); (68U99-XX)

aipred

Software Authors:   M. Benjamin Sabath, Qian Di, Danielle Braun, Francesca Dominici, Christine Choirat
Cited in: 0 Publications
Related Software: yaml; data.table; lme4; h2o; lubridate; dplyr; …
Main Fields:

CUDAMPF++

Software Authors:   Hanyu Jiang, Narayan Ganesan, Yu-Dong Yao
Cited in: 0 Publications
Related Software: HMMER; CUDA
Main Fields:

FReET

Software Authors:   Drahomír Novák; Miroslav Vořechovský; Břetislav Teplý
Cited in: 0 Publications
Related Software: PCLab; ESFM; NiHu; ABAQUS; Matlab; Abaqus2Matlab
Main Fields:

GLMSELECT

Software Authors:   R. Cohen
Cited in: 1 Publication (2016)
Related Software: msABC; abc; ElemStatLearn; ABCtoolbox; lars; pls
Main Fields:

MatchFormer

Software Authors:   Qing Wang, Jiaming Zhang, Kailun Yang, Kunyu Peng, Rainer Stiefelhagen
Cited in: 0 Publications
Related Software: MegaDepth; D2-Net; SuperPoint; GANDissect; GMS; HPatches; …
Main Fields:

mbsolve

Software Authors:   Michael Riesch, Christian Jirauschek
Cited in: 1 Publication (2022)
Related Software: CMPGRD; Ogen
Main Fields:

Quikr

Software Authors:   David Koslicki, Simon Foucart, Gail Rosen
Cited in: 1 Publication (2017)
Related Software: PhaseLift; SparsePR; CoSaMP
Main Fields:

RANKS

Software Authors:   Giorgio Valentini, Giuliano Armano, Marco Frasca, Jianyi Lin, Marco Mesiti, Matteo Re
Cited in: 1 Publication (2021)
Related Software: EGAD; diffuStats; AptRank; GeneMANIA; DisGeNET; STRING
Main Fields:

RunStats

Software Authors:   Jenks G
Cited in: 0 Publications
Related Software: DDSketch; ggplot2; Python; tdigest; patchwork; benchden; …
Main Fields:

SigHunt

Software Authors:   Jaron, K. S.; Moravec, J. C.; Martínková, N.
Cited in: 1 Publication (2019)
Related Software: IslandViewer; Mauve; Pfam; BLAST; PSI-BLAST
Main Fields:

survHD

Software Authors:   Bernau C, Waldron L, Riester M
Cited in: 0 Publications
Related Software: ncvreg; SIS; R; APPLE; survival; glmnet
Main Fields:

Weave

Software Authors:   K. Wette, S. Walsh, R. Prix, M. A. Papa
Cited in: 0 Publications
Related Software: Travis CI; HTCondor; SWIG; LALSuite; GSL; Octave; …
Main Fields:

XG-PseU

Software Authors:   Liu, K.; Chen, W.; Lin, H.
Cited in: 1 Publication (2021)
Related Software: iBLP; Deep4mC; iDNA-MS; PSAC; FoldRec-C2C; iTerm-PseKNC; …
Main Fields: