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Found 133 Software Packages (Results 1–100)

ARock

Software Authors:   Peng, Zhimin; Xu, Yangyang; Yan, Ming; Yin, Wotao
Cited in: 33 Publications (2016–2022)
Related Software: HOGWILD; iPiano; Saga; Finito; JuMP; Julia; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX); Computer science (68-XX)

Rfam

Software Authors:   Burge SW, Daub J, Eberhardt R, Tate J, Barquist L, Nawrocki EP, Eddy SR, Gardner PP, Bateman A
Cited in: 24 Publications (2006–2019)
Related Software: Infernal; R; Rnamotif; ViennaRNA; BLAT; KEGG; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Computer science (68-XX)

D-ADMM

Software Authors:   Mota, João F. C.; Xavier, João M. F.; Aguiar, Pedro M. Q.; Püschel, Markus
Cited in: 26 Publications (2013–2022)
Related Software: Saga; RACQP; lcmm; clusterpath; msgl; glmnet; …
Main Fields: Operator theory (47-XX); Statistics (62-XX); Computer science (68-XX)

MuPAD-Combinat

Software Authors:   Descouens, Francois
Cited in: 24 Publications (2004–2019)
Related Software: MuPAD; OEIS; SageMath; Mathematica; Maple; Maxima; …
Main Fields: Combinatorics (05-XX); Associative rings and algebras (16-XX); Nonassociative rings and algebras (17-XX)

WebLogo

Software Authors:   G.E. Crooks, G. Hon, J.-M. Chandonia, S.E. Brenner
Cited in: 13 Publications (2004–2021)
Related Software: TRANSFAC; BioProspector; R; RegulonDB; LIBSVM; JASPAR; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

iPromoter-2L

Software Authors:   Liu, B.; Yang, F.; Huang, D. S.
Cited in: 22 Publications (2018–2019)
Related Software: iRSpot-EL; iRNA-PseColl; pLoc-mAnimal; pLoc-mEuk; iDNA6mA-PseKNC; 2L-piRNA; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

clue

Software Authors:   Kurt Hornik
Cited in: 9 Publications (2009–2022)
Related Software: R; mclust; cluster (R); tm; movMF; cclust; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

AFRYCA

Software Authors:   Álvaro Labella; Francisco J. Estrella; Luis Martínez
Cited in: 18 Publications (2015–2021)
Related Software: FLINTSTONES; EMD; Wasserstein GAN; AlphaGo; SCIP
Main Fields: Mathematical logic and foundations (03-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

Java Grande

Software Authors:   –
Cited in: 12 Publications (2001–2015)
Related Software: SPEC Benchmarks; NINJA; Checkfence; SingleTrack; Atomizer; BOINC; …
Main Fields: Mathematical logic and foundations (03-XX); Computer science (68-XX)

CAP3

Software Authors:   Xiaoqiu Huang; Anup Madan
Cited in: 11 Publications (2001–2020)
Related Software: BLAST; PSI-BLAST; ClustalW; ARACHNE; BLAT; bioperl; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

MAFRA

Software Authors:   Maedche, Alexander; Motik, Boris; Silva, Nuno; Volz, Raphael
Cited in: 14 Publications (2002–2015)
Related Software: FOAM; PROMPT; yOWL; WordNet; Ontograte; PRMLT; …
Main Fields: Computer science (68-XX); Quantum theory (81-XX); Relativity and gravitational theory (83-XX)

iRNA-Methyl

Software Authors:   Chen, W.; Feng, P.; Ding, H.; Lin, H.; Chou, K. -C.
Cited in: 14 Publications (2016–2019)
Related Software: iPTM-mLys; iSuc-PseOpt; Pse-in-One; 2L-piRNA; iDNA6mA-PseKNC; iRNA-PseU; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

MAMMOTH

Software Authors:   Ortiz, A.R.; Strauss, C.E.M.; Olmea, O.
Cited in: 8 Publications (2008–2017)
Related Software: TM-align; BLAST; PSI-BLAST; DIAL; Qhull; ConSeq; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

T-REX

Software Authors:   Boc, A., Diallo, A.B., Makarenkov, V.
Cited in: 9 Publications (2006–2022)
Related Software: RIATA-HGT; SplitsTree; IcyTree; Dendroscope; ggplot2; Mesquite; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

MLESAC

Software Authors:   Tordoff, B.J.; Murray, D.
Cited in: 6 Publications (2014–2022)
Related Software: SIFT; KiloNeRF; CamNet; SinGAN; LoFTR; Patch2Pix; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Information and communication theory, circuits (94-XX)

PADRE

Software Authors:   K. T. Huber, B. Oxelman, M. Lott, V. Moulton
Cited in: 8 Publications (2007–2022)
Related Software: PhyloNetwork; OrthoMCL; Proteinortho; Genetree
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

agricolae

Software Authors:   Felipe de Mendiburu
Cited in: 5 Publications (2016–2021)
Related Software: R; ggplot2; kableExtra; colorspace; knitr; SAS; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

JPred

Software Authors:   Cuff JA, Clamp ME, Siddiqui AS, Finlay M, Barton GJ
Cited in: 2 Publications (2004)
Related Software: BLAST; PSI-BLAST; ProtVec; ACCpro; GitHub; SSpro; …
Main Fields: Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

SC3

Software Authors:   Vladimir Yu Kiselev, Kristina Kirschner, Michael T. Schaub, Tallulah Andrews, Andrew Yiu, Tamir Chandra, Kedar N. Natarajan, Wolf Reik, Mauricio Barahona, Anthony R Green, Martin Hemberg
Cited in: 8 Publications (2017–2021)
Related Software: CIDR; ZIFA; SNN-Cliq; DESeq2; MAST; DEseq; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

VarScan

Software Authors:   Koboldt DC, Zhang Q, Larson DE, Shen D, McLellan MD, Lin L, Miller CA, Mardis ER, Ding L, Wilson RK
Cited in: 7 Publications (2012–2019)
Related Software: Samtools; Trimmomatic; GATK; SNVMix; edgeR; mrsFAST; …
Main Fields: General and overarching topics; collections (00-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

ARGOS

Software Authors:   Colson, Gerard
Cited in: 7 Publications (2000–2010)
Related Software: VIP Analysis; Web-HIPRE; VIKOR; BANKADVISER; Decision Lab 2000; ORESTE; …
Main Fields: Computer science (68-XX); Operations research, mathematical programming (90-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

RNAshapes

Software Authors:   Steffen P., Voß B., Rehmsmeier M., Reeder J., Giegerich R
Cited in: 6 Publications (2008–2015)
Related Software: Mfold; Rfam; Pfold; CONTRAfold; DINAMelt; Sfold; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Statistical mechanics, structure of matter (82-XX)

CIDEr

Software Authors:   Ramakrishna Vedantam, C. Lawrence Zitnick, Devi Parikh
Cited in: 4 Publications (2020–2022)
Related Software: BLEU; Rouge; EfficientDet; Flickr30K; YOLO; ImageNet; …
Main Fields: Computer science (68-XX)

ExtraPush

Software Authors:   Zeng, Jinshan; Yin, Wotao
Cited in: 6 Publications (2017–2022)
Related Software: DiSCO; DEXTRA; CVX
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

STAMP

Software Authors:   –
Cited in: 2 Publications (2014–2020)
Related Software: BioOptimizer; GAME; TRANSFAC; R; MODA; Kavosh; …
Main Fields: General and overarching topics; collections (00-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

USAC

Software Authors:   Raguram, R.; Chum, O.; Pollefeys, M.; Matas, J.; Frahm, JM
Cited in: 6 Publications (2016–2021)
Related Software: SURF; MonoSLAM; SIFT; SOSNet; L2-Net; Theia; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

EPoS

Software Authors:   Thasso Griebel; Malte Brinkmeyer; Sebastian Böcker
Cited in: 3 Publications (2013–2021)
Related Software: PAUP*; RAxML; Rec-I-DCM3; PhySIC; Algorithm 447; SuMoTED; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

Evigan

Software Authors:   Liu Q1, Mackey AJ, Roos DS, Pereira FC
Cited in: 2 Publications (2011–2015)
Related Software: Matlab; SURF; Theano; LIBLINEAR; LIBSVM; ARACHNE; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Computer science (68-XX)

LITESET

Software Authors:   Hanaoka, Goichiro; Zheng, Yuliang; Imai, Hideki
Cited in: 5 Publications (1998–2017)
Related Software: McOE; CLEFIA
Main Fields: Computer science (68-XX); Information and communication theory, circuits (94-XX)

MARNA

Software Authors:   Sven Siebert; Rolf Backofen
Cited in: 3 Publications (2008–2015)
Related Software: Rfam; STRAL; ClustalW; MAFFT; T-coffee; RSEARCH; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

Phrap

Software Authors:   P. Green
Cited in: 5 Publications (2001–2008)
Related Software: CAP3; Condor-G; Globus Toolkit; ARACHNE; RePS; RepeatMasker
Main Fields: Probability theory and stochastic processes (60-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

PSync

Software Authors:   Drăgoi, Cezara; Henzinger, Thomas A.; Zufferey, Damien
Cited in: 5 Publications (2016–2021)
Related Software: Verdi; SPIN; ByMC; z3; Distal; Horus; …
Main Fields: Mathematical logic and foundations (03-XX); Computer science (68-XX)

GeneWays

Software Authors:   Rzhetsky A, Iossifov I, Koike T, Krauthammer M, Kra P et al
Cited in: 2 Publications (2006–2017)
Related Software: Mfold; GeneCards; iHOP; Sfold; PARAssign; Numbat; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

M-Coffee

Software Authors:   Wallace IM, O’Sullivan O, Higgins DG et al
Cited in: 3 Publications (2014–2017)
Related Software: Kalign; MUSCLE; MAFFT; OXBench; UniProt; SABmark; …
Main Fields: General and overarching topics; collections (00-XX); Probability theory and stochastic processes (60-XX); Biology and other natural sciences (92-XX)

rVISTA

Software Authors:   Gabriela G. Loots, Ivan Ovcharenko
Cited in: 2 Publications (2011–2016)
Related Software: KEGG; T-coffee; ClustalW; UniPROBE; InteroPORC; JASPAR; …
Main Fields: General and overarching topics; collections (00-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

CCTpack

Software Authors:   Royce Anders
Cited in: 3 Publications (2014–2020)
Related Software: BayesDA; JAGS; rjags; psych; TreeBUGS; Polycor; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

CIRFE

Software Authors:   Sahu, Anit Kumar; Jakovetić, Dusan; Kar, Soummya
Cited in: 3 Publications (2018–2020)
Related Software: SPIRAL
Main Fields: Statistics (62-XX); Computer science (68-XX); Systems theory; control (93-XX)

dipSPAdes

Software Authors:   Yana Safonova, Anton Bankevich, Pavel A. Pevzner
Cited in: 1 Publication (2019)
Related Software: GAGE; Velvet; HaploMerger; Hapsembler; Meraculous-2D; CAMSA; …
Main Fields: Biology and other natural sciences (92-XX)

HPAM

Software Authors:   Cotik, V.; Romero Zaliz, R.; Zwir, I.
Cited in: 3 Publications (2005–2011)
Related Software: RegulonDB; EnsemblePail; GPCR-CA; BacPP; Quat-2L; GPCR-GIA; …
Main Fields: Computer science (68-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

IPknot

Software Authors:   Sato K, Kato Y, Hamada M, Akutsu T, Asai K
Cited in: 3 Publications (2012–2017)
Related Software: jViz.Rna; Mfold; GitHub; Minimus; EMIRGE; ViennaRNA; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Computer science (68-XX)

Meta-IDBA

Software Authors:   Peng, Y., Leung, H.C., Yiu, S.M., Chin, F.Y.
Cited in: 3 Publications (2015–2018)
Related Software: ABySS; BWA; ART; GASSST; CUSHAW; Bowtie 2; …
Main Fields: Probability theory and stochastic processes (60-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

NAPSAC

Software Authors:   Myatt, D.; Torr, P.; Nasuto, S.; Bishop, J.; Craddock, R.
Cited in: 3 Publications (2010–2017)
Related Software: SIFT; USAC; MLESAC; Vlfeat; VanHuffel
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

OpenGV

Software Authors:   Kneip, L.; Furgale, P.
Cited in: 3 Publications (2021–2022)
Related Software: KiloNeRF; CamNet; SinGAN; LoFTR; Patch2Pix; MVSNet; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

PatSearch

Software Authors:   Grillo G, Licciulli F, Liuni S et al
Cited in: 2 Publications (2007–2015)
Related Software: Minimus; EMIRGE; ViennaRNA; TagCleaner; OligoWalk; OptiRNAi; …
Main Fields: General and overarching topics; collections (00-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

PBSIM

Software Authors:   Y. Ono, K. Asai, M. Hamada
Cited in: 3 Publications (2017–2020)
Related Software: Canu; Maligner; OMBlast; ABySS; QUAST; Velvet; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

PCAP

Software Authors:   Huang, X., Wang, J., Aluru, S., Yang, S.P., Hillier, L.
Cited in: 3 Publications (2007–2017)
Related Software: ClustalW; PHYLIP; JBROWSE; InterProScan; MAKER; EasyGene; …
Main Fields: General and overarching topics; collections (00-XX); Probability theory and stochastic processes (60-XX); Operations research, mathematical programming (90-XX)

ProCKSI

Software Authors:   Daniel Barthel, Jonathan D Hirst, Jacek Błażewicz, Edmund K Burke, Natalio Krasnogor
Cited in: 2 Publications (2012–2013)
Related Software: CDNA; DNACompress; RNACompress; clustervalidation; NeoBio; ARACNE; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

PROMALS3D

Software Authors:   Jimin Pei, Nick V. Grishin
Cited in: 2 Publications (2016–2017)
Related Software: MUSCLE; MAFFT; Opal; LEON; RASCAL; GUIDANCE2; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

ReFHap

Software Authors:   J. Duitama, T. Huebsch, G. McEwen, E. Suk, M. Hoehe
Cited in: 3 Publications (2014–2016)
Related Software: HapCUT; SpeedHap; iRSpot-PseDNC; Eclat; iCDI-PseFpt; Signal-CF; …
Main Fields: Combinatorics (05-XX); Biology and other natural sciences (92-XX)

relations

Software Authors:   David Meyer, Kurt Hornik, Christian Buchta
Cited in: 1 Publication (2018)
Related Software: R; sets; vegan; gclus; TSP; ade4; …
Main Fields: Statistics (62-XX); Computer science (68-XX)

RNAalifold

Software Authors:   Bernhart SH, Hofacker IL, Will S, Gruber AR, Stadler PF
Cited in: 3 Publications (2015–2016)
Related Software: Rfam; CompaRNA; MODENA; Quicksort; CentroidAlifold; MARNA; …
Main Fields: General and overarching topics; collections (00-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

SentEval

Software Authors:   Alexis Conneau; Douwe Kiela
Cited in: 0 Publications
Related Software: GloVe; XLNet; BERT; RoBERTa; FaceNet; BERTScore; …
Main Fields:

TGICL

Software Authors:   Pertea, G.; Huang, X.; Liang, F.; Antonescu, V.; Sultana, R.; Karamycheva, S.; Lee, Y.; White, J.; Cheung, F.; Parvizi, B.
Cited in: 2 Publications (2005–2012)
Related Software: qvality; BLAST; PSI-BLAST; PHRAP; GMAP; ASTALAVISTA; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)

ARAGORN

Software Authors:   Dean Laslett, Bjorn Canback
Cited in: 2 Publications (2008–2016)
Related Software: tRNAscan-SE; PlantTFDB; eggNOG; ELM; dbCAN; antiSMASH; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

ArrayMining

Software Authors:   Glaab E, Garibaldi JM, Krasnogor N
Cited in: 0 Publications
Related Software: R; vrml2pov; GGobi; lattice; Cortona3D; fastICA; …
Main Fields:

BlockSim

Software Authors:   Alharby M., van Moorsel A.
Cited in: 1 Publication (2021)
Related Software: CLoTH
Main Fields: Operations research, mathematical programming (90-XX)

CEASE

Software Authors:   Amini, Amir; Asif, Amir; Mohammadi, Arash
Cited in: 2 Publications (2018–2021)
Related Software: Mosek; YALMIP
Main Fields: Operations research, mathematical programming (90-XX); Systems theory; control (93-XX)

CONCORD

Software Authors:   Wei, Y.; Thompson, J.; Floudas, C.A.
Cited in: 2 Publications (2012)
Related Software: BLAST; PSI-BLAST; Mfold; CASP9
Main Fields: Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

ConQuR-Bio

Software Authors:   Brancotte, B.; Rance, B.; Denise, A.; Cohen-Boulakia, S.
Cited in: 1 Publication (2020)
Related Software:
Main Fields: Combinatorics (05-XX); Computer science (68-XX)

Constructive Proof FLP

Software Authors:   Bisping, Benjamin; Brodmann, Paul-David; Jungnickel, Tim; Rickmann, Christina; Seidler, Henning; Stüber, Anke; Wilhelm-Weidner, Arno; Peters, Kirstin; Nestmann, Uwe
Cited in: 2 Publications (2016–2018)
Related Software: Archive Formal Proofs; Chapar; Verdi; CVC4; z3; Locales; …
Main Fields: Computer science (68-XX)

DNADU

Software Authors:   Yin, Changchuan
Cited in: 2 Publications (2017–2021)
Related Software: PPS; GitHub; RepeatMasker; Python
Main Fields: Biology and other natural sciences (92-XX)

foxPSL

Software Authors:   Magliacane, Sara; Stutz, Philip; Groth, Paul; Bernstein, Abraham
Cited in: 1 Publication (2017)
Related Software: ClaimEval; HyPER; BLOG; Edward; mplp2; SPOOK; …
Main Fields: Statistics (62-XX); Computer science (68-XX)

MaSuRCA

Software Authors:   Zimin, A.V., Marçais, G., Puiu, D., Roberts, M., Salzberg, S.L., Yorke, J.A.
Cited in: 2 Publications (2017–2021)
Related Software: KMC; Velvet; ZSTD; DARRC; SCALCE; GitHub
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

MergeAlign

Software Authors:   Collingridge, P.W., Kelly, S.
Cited in: 2 Publications (2017–2018)
Related Software: LocARNAscan; BLAT; MEME; DIALIGN; Footprinter; Opal; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

MOPAC

Software Authors:   Ganesh, R.; Siegele, Deborah A.; Ioerger, Thomas R.
Cited in: 2 Publications (2002–2017)
Related Software: SIESTA; PWscf; libssh; RandSpg; Open Babel; VASP; …
Main Fields: Computer science (68-XX); Statistical mechanics, structure of matter (82-XX); Biology and other natural sciences (92-XX)

OnBalance

Software Authors:   The Octane Group Ltd
Cited in: 1 Publication (2016)
Related Software: HIPRE 3+; BENSOLVE; Guimoo; DecideIT; Expert Choice; M-MACBETH; …
Main Fields: General and overarching topics; collections (00-XX); Operations research, mathematical programming (90-XX)

PeptX

Software Authors:   Bernhard Knapp, Verena Giczi, Reiner Ribarics, Wolfgang Schreiner
Cited in: 0 Publications
Related Software: SMS-EMOA; SPEA2; WebLogo
Main Fields:

PONDR-FIT

Software Authors:   Bin Xue, Roland L. Dunbrack, Robert W. Williams, Keith Dunker, Vladimir N. Uversky
Cited in: 2 Publications (2011–2016)
Related Software: PyMOL; MPRAP; GOLD; BLAST; PSI-BLAST; svmPRAT; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

PRALINE

Software Authors:   V. A. Simossis; J. Heringa
Cited in: 1 Publication (2017)
Related Software: PHYLIP; Tracer; MulRF; iGTP; TOPAL; ExaBayes; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

PreDisorder

Software Authors:   Xin Deng, Jesse Eickholt, Jianlin Cheng
Cited in: 1 Publication (2016)
Related Software: PlantTFDB; eggNOG; ELM; dbCAN; antiSMASH; dissectHMMER; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

PuFFIN

Software Authors:   Polishko, A., E. M. Bunnik, K. G. Le Roch, S. Lonardi
Cited in: 2 Publications (2015–2017)
Related Software: GitHub; Galaxy; MONKEY; DGW; ThIEF; Bowtie 2; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

Pycao

Software Authors:   Laurent Evain
Cited in: 2 Publications (2016)
Related Software: PovRay; Blender; SALOME; SCIP; CindyJS; PySCIPOpt; …
Main Fields: General and overarching topics; collections (00-XX); Numerical analysis (65-XX); Computer science (68-XX)

R2R

Software Authors:   Weinberg Z, Breaker RR
Cited in: 1 Publication (2015)
Related Software: jViz.Rna; PseudoViewer3; Infernal; VARNA; Rfam; Minimus; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

RadCon

Software Authors:   Joseph L. Thorley, Roderic D. M. Page
Cited in: 2 Publications (2004–2005)
Related Software: PHYLIP; PAUP*; TreeWiz; MrBayes; CloSpan; CloseGraph; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

RNAG

Software Authors:   Wei D, Alpert LV, Lawrence CE
Cited in: 2 Publications (2015–2016)
Related Software: Minimus; EMIRGE; ViennaRNA; TagCleaner; OligoWalk; OptiRNAi; …
Main Fields: General and overarching topics; collections (00-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

TreeOfTrees

Software Authors:   Darlu, Pierre; Guénoche, Alain
Cited in: 2 Publications (2011–2013)
Related Software: TOPD/FMTS; Seq-Gen; PHYLIP; PhyloNetwork; TreeJuxtaposer; PAUP*
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

WAR

Software Authors:   Torarinsson E, Lindgreen S
Cited in: 1 Publication (2015)
Related Software: Minimus; EMIRGE; ViennaRNA; TagCleaner; OligoWalk; OptiRNAi; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

Web-strabnet

Software Authors:   Fisher, A.C.; Lake, S.P.; Cunningham, I.P.; Chandna, A.
Cited in: 2 Publications (2010–2020)
Related Software: Matlab
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

YEASTRACT

Software Authors:   Teixeira MC et al
Cited in: 2 Publications (2018–2020)
Related Software: KEGG; GlobalMIT; BGRMI; ARACNE; MESS; G1DBN; …
Main Fields: Biology and other natural sciences (92-XX)

adaSC3

Software Authors:   Fuetterer, Cornelia; Augustin, Thomas; Fuchs, Christiane
Cited in: 1 Publication (2020)
Related Software: lle; destiny; SC3; emdbook; Scikit; vegan; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

advclust

Software Authors:   Achmad Fauzi Bagus F, Setia Pramana
Cited in: 1 Publication (2020)
Related Software: UCI-ml; mixture; distances; dclust; usmap; MixAll; …
Main Fields: Statistics (62-XX)

Aequitas

Software Authors:   Pedro Saleiro, Benedict Kuester, Loren Hinkson, Jesse London, Abby Stevens, Ari Anisfeld, Kit T. Rodolfa, Rayid Ghani
Cited in: 1 Publication (2021)
Related Software: modelStudio; NumPy; plotly.py; Fairlearn; PDPbox; iNNvestigate; …
Main Fields: Computer science (68-XX)

AHP Excel template

Software Authors:   BPMSG; Klaus D. Goepel
Cited in: 1 Publication (2022)
Related Software:
Main Fields: Mechanics of deformable solids (74-XX); Operations research, mathematical programming (90-XX)

ATtRACT

Software Authors:   Giudice G, Sánchez-Cabo F, Torroja C, Lara-Pezzi E
Cited in: 1 Publication (2018)
Related Software: gcrma; RedeR; STRINGdb; ANIMO; PRS; NET-SYNTHESIS; …
Main Fields: Biology and other natural sciences (92-XX)

BRUSELAS

Software Authors:   Banegas-Luna, A.J., Cerón-Carrasco, J.P., Puertas-Martín, S., Pérez-Sánchez, H
Cited in: 1 Publication (2017)
Related Software:
Main Fields: Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

CARNA

Software Authors:   Sorescu DA, Mohl M, Mann M et al
Cited in: 1 Publication (2017)
Related Software: PARAssign; Numbat; WhatsHap; INDDGO; Gravisto; MetaCrop; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

CATS

Software Authors:   Han Yu, Andrew S. Yoo, Iva Greenwald
Cited in: 1 Publication (2010)
Related Software: CisModule
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)

CluSim

Software Authors:   Alexander J. Gates; Yong-Yeol Ahn
Cited in: 0 Publications
Related Software: DendroPy; Scikit; Python
Main Fields:

CODA

Software Authors:   C.M. Deane, T.L. Blundell
Cited in: 1 Publication (2014)
Related Software: SIRENE; UniProt; WebGestalt; KDDONTO; Protege; GeoSVM; …
Main Fields: General and overarching topics; collections (00-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

ConsDock

Software Authors:   Paul N.; Rognan D.
Cited in: 1 Publication (2004)
Related Software: AutoDock
Main Fields: Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

ConsensusClusterPlus

Software Authors:   Matthew D Wilkerson, D Neil Hayes
Cited in: 1 Publication (2016)
Related Software: glmnet; NMF
Main Fields: Statistics (62-XX)

consensusSeekeR

Software Authors:   Astrid Deschenes, Fabien Claude Lamaze, Pascal Belleau, Arnaud Droit
Cited in: 1 Publication (2015)
Related Software: PICS; nucleoSim; PuFFIN; nucleR; VennDiagram
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

crowdGPPL

Software Authors:   Simpson, Edwin; Gurevych, Iryna
Cited in: 1 Publication (2020)
Related Software: BERT; GitHub; k-means++; word2vec
Main Fields: Statistics (62-XX); Computer science (68-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

DASACT

Software Authors:   Domenach, Florent; Tayari, Ali
Cited in: 1 Publication (2016)
Related Software: PAUP*; PHYLIP
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

DeepText2GO

Software Authors:   Ronghui You; Xiaodi Huang; Shanfeng Zhu
Cited in: 1 Publication (2022)
Related Software: COFACTOR; DeepGOPlus; DeepGO; QAUST; ProTranslator; GOLabeler; …
Main Fields: Biology and other natural sciences (92-XX)

DUET

Software Authors:   Douglas E.V. Pires, David B. Ascher, Tom L. Blundell
Cited in: 1 Publication (2016)
Related Software: PlantTFDB; eggNOG; ELM; dbCAN; antiSMASH; dissectHMMER; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

etcd

Software Authors:   coreos.com
Cited in: 1 Publication (2016)
Related Software: GitHub; ZooKeeper
Main Fields: Computer science (68-XX)

FASTSP

Software Authors:   Siavash Mirarab, Tandy Warnow
Cited in: 1 Publication (2013)
Related Software: iGTP; MrBayes; Gegenees; POY; MLTreeMap; SEPP; …
Main Fields: Biology and other natural sciences (92-XX)

FISHtrees

Software Authors:   Gertz, E.M., Chowdhury, S.A., Lee, W., Wangsa, D., Heselmeyer-Haddad, K., Ried, T., Schwartz, R., Schäffer, A.A.
Cited in: 1 Publication (2019)
Related Software: ExaBayes; ExaML; MulRF; iGTP; GASTS; MLGO; …
Main Fields: General and overarching topics; collections (00-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

InterEvDock

Software Authors:   Yu, J.; Vavrusa, M.; Andreani, J.; Rey, J.; Tufféry, P.; Guerois, R.
Cited in: 1 Publication (2019)
Related Software: ExPASy; PRODIGY; I-TASSER; PROCHECK; Gromacs
Main Fields: Biology and other natural sciences (92-XX)