yaml2sbml swMATH ID: 38702 Software Authors: Vanhoefer, Jakob; Matos, Marta R. A.; Pathirana, Dilan; Schälte, Yannik; Hasenauer, Jan Description: yaml2sbml is a small package in Python to convert an ODE model specified in a YAML file into SBML for ODE simulation and into PEtab for parameter fitting. yaml2sbml offers: a translator of ODE models specified in YAML into SBML/PEtab via a Python and a command-line interface; a format validator for the input YAML; and a model editor, which provides a simplified interface to generate, import and export YAML models. Homepage: https://yaml2sbml.readthedocs.io/en/latest/ Source Code: https://github.com/yaml2sbml-dev/yaml2sbml Dependencies: Python Keywords: Journal of Open Source Software; Python; yaml2sbml; convert an ODE model; YAML file; SBML; PEtab Related Software: AMICI; PEtab; Data2Dynamics; COPASI; ScrumPy; Antimony; MOCCASIN; SimpleSBML; libSBML; Python Cited in: 0 Documents Standard Articles 1 Publication describing the Software Year yaml2sbml: Human-readable and -writable specification of ODE models and their conversion to SBML Link Jakob Vanhoefer, Marta R. A. Matos, Dilan Pathirana, Yannik Schälte, Jan Hasenauer 2021