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Found 252 Software Packages (Results 1–100)

EnKF

Software Authors:   Evensen, Geir; P. Sakov
Referenced in: 435 Publications (2003–2022)
Related Software: GSLIB; PRMLT; Matlab; L-BFGS; BayesDA; MRST; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

ggplot2

Software Authors:   Hadley Wickham
Referenced in: 203 Publications (2006–2022)
Related Software: R; dplyr; Rcpp; shiny; MASS (R); knitr; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

Rcpp

Software Authors:   Dirk Eddelbuettel; Romain Francois; JJ Allaire; John Chambers; Douglas Bates; Kevin Ushey
Referenced in: 128 Publications (2013–2022)
Related Software: R; RcppArmadillo; ggplot2; CRAN; CODA; Armadillo; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

RCV1

Software Authors:   David D. Lewis; Yiming Yang; Tony G. Rose; Fan Li
Referenced in: 97 Publications (2005–2022)
Related Software: LIBSVM; UCI-ml; BoosTexter; L-BFGS; SGD-QN; LIBLINEAR; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Statistics (62-XX); Numerical analysis (65-XX)

LDPC

Software Authors:   Radford M. Neal; MacKay, D. J. C.
Referenced in: 79 Publications (1998–2022)
Related Software: Matlab; Magma; QC-LDPC; McEliece; Code Tables; GUAVA; …
Main Fields: Combinatorics (05-XX); Geometry (51-XX); Computer science (68-XX)

PostgreSQL

Software Authors:   –
Referenced in: 51 Publications (2000–2022)
Related Software: Oracle; MySQL; Python; MS SQL Server; DB2; R; …
Main Fields: Mathematical logic and foundations (03-XX); Statistics (62-XX); Computer science (68-XX)

PcGive

Software Authors:   Doornik JA, Hendry DF
Referenced in: 50 Publications (1998–2020)
Related Software: PcGets; Ox; Stata; R; EViews; SHAZAM; …
Main Fields: Difference and functional equations (39-XX); Statistics (62-XX); Numerical analysis (65-XX)

FRGC

Software Authors:   NIST
Referenced in: 36 Publications (2006–2015)
Related Software: FERET; AR face; CMU PIE; Multi-PIE; KPCA plus LDA; Yale Face; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

Daikon

Software Authors:   Ernst, Michael D.; Perkins, Jeff H.; Guo, Philip J.; McCamant, Stephen; Pacheco, Carlos; Tschantz, Matthew S.; Xiao, Chen
Referenced in: 34 Publications (2005–2022)
Related Software: JML; Eiffel; z3; Houdini; Z; JCrasher; …
Main Fields: Mathematical logic and foundations (03-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

Mixmod

Software Authors:   Biernacki, Christophe; Celeux, Gilles; Govaert, Gérard; Langrognet, Florent
Referenced in: 35 Publications (2006–2018)
Related Software: mclust; R; PGMM; UCI-ml; Rmixmod; PRMLT; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)

Chimera

Software Authors:   Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, Meng EC, Ferrin TE
Referenced in: 28 Publications (2006–2021)
Related Software: BLAST; PSI-BLAST; PyMOL; AutoDock; VMD; Gromacs; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Fluid mechanics (76-XX)

DEAP

Software Authors:   Fortin, Félix-Antoine; De Rainville, François-Michel; Gardner, Marc-André; Parizeau, Marc; Gagné, Christian
Referenced in: 20 Publications (2015–2022)
Related Software: Python; Scikit; SciPy; PyTorch; NumPy; Matplotlib; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

JUnit

Software Authors:   Cheon, Yoonsik; Leavens, Gary T.
Referenced in: 15 Publications (2002–2020)
Related Software: JML; Eiffel; ESC/Java; Korat; KeY; Spec#; …
Main Fields: Probability theory and stochastic processes (60-XX); Numerical analysis (65-XX); Computer science (68-XX)

desing

Software Authors:   Josef Schicho; Gábor Bodnár
Referenced in: 28 Publications (2000–2021)
Related Software: PGeomlib; SINGULAR; Maple; reszeta.lib; Qhull; resolve.lib; …
Main Fields: Number theory (11-XX); Commutative algebra (13-XX); Algebraic geometry (14-XX)

MayaVi

Software Authors:   Prabhu Ramachandran
Referenced in: 22 Publications (2003–2022)
Related Software: Mayavi; Matplotlib; Python; SciPy; VTK; NumPy; …
Main Fields: Dynamical systems and ergodic theory (37-XX); Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX)

Statsmodels

Software Authors:   Josef Perktold, Skipper Seabold, Jonathan Taylor, statsmodels-developers
Referenced in: 14 Publications (2016–2022)
Related Software: Python; Scikit; SciPy; NumPy; Matplotlib; R; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Computer science (68-XX)

MARK

Software Authors:   White GC, Burnham KP
Referenced in: 22 Publications (2002–2022)
Related Software: Program MARK; R; CODA; JAGS; RMark; M-SURGE; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX); Systems theory; control (93-XX)

MLlib

Software Authors:   Meng, Xiangrui; Bradley, Joseph; Yavuz, Burak; Sparks, Evan; Venkataraman, Shivaram; Liu, Davies; Freeman, Jeremy; Tsai, Db; Amde, Manish; Owen, Sean; Xin, Doris; Xin, Reynold; Franklin, Michael J.; Zadeh, Reza; Zaharia, Matei; Talwalkar, Ameet
Referenced in: 21 Publications (2016–2021)
Related Software: Apache Spark; Scikit; Spark; LIBSVM; MapReduce; Hadoop; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Computer science (68-XX)

SOM_PAK

Software Authors:   Kohonen, T., Hynninen, J., Kangas, J., Laaksonen, J.
Referenced in: 17 Publications (1995–2016)
Related Software: SOM; UCI-ml; LVQ_PAK; SOMLib; EMD; VisualSEEk; …
Main Fields: Dynamical systems and ergodic theory (37-XX); Statistics (62-XX); Computer science (68-XX)

BCI2000

Software Authors:   Schalk G, McFarland D J, Hinterberger T, Birbaumer N, Wolpaw J R
Referenced in: 10 Publications (2016–2021)
Related Software: PhysioToolkit; EEGLAB; OpenViBE; Brainstorm; BCILAB; rtMEG; …
Main Fields: Ordinary differential equations (34-XX); Statistics (62-XX); Computer science (68-XX)

Delve Datasets

Software Authors:   RM Neal
Referenced in: 13 Publications (1999–2020)
Related Software: LIBSVM; UCI-ml; ADADELTA; Adam; RMSprop; PyTorch; …
Main Fields: Partial differential equations (35-XX); Statistics (62-XX); Numerical analysis (65-XX)

SPMF

Software Authors:   Fournier-Viger, Philippe; Gomariz, Antonio; Gueniche, Ted; Soltani, Azadeh; Wu, Cheng-Wei; Tseng, Vincent S.
Referenced in: 14 Publications (2013–2022)
Related Software: PrefixSpan; SPADE; Scikit; LCM; Minebench; Python; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

GenSSI

Software Authors:   Chis O, Banga J, Balsa-Canto E
Referenced in: 14 Publications (2013–2022)
Related Software: DAISY; SIAN; AMIGO; COMBOS; ObservabilityTest; GitHub; …
Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX); Statistics (62-XX)

BioPortal

Software Authors:   Noy NF, Shah NH, Whetzel PL et al
Referenced in: 8 Publications (2016–2020)
Related Software: DBpedia; Chainsaw; Konclude; FaCT++; Pellet; Galaxy; …
Main Fields: General and overarching topics; collections (00-XX); Mathematical logic and foundations (03-XX); Statistics (62-XX)

GO-TermFinder

Software Authors:   Boyle, E. I., Weng, S., Gollub, J., Jin, H., Botstein, D., Cherry, J. M., Sherlock, G.
Referenced in: 5 Publications (2013–2020)
Related Software: FatiGO; STRING; Cytoscape; KEGG; GOstat; iGA; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

HDDM

Software Authors:   Thomas V. Wiecki, Imri Sofer, Michael J. Frank
Referenced in: 9 Publications (2017–2020)
Related Software: Fast-dm; R; DMAT; Psychophysics Toolbox; rtdists; BayesDA; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

jPlex

Software Authors:   Sexton, Harlan; Vejdemo-Johansson, Mikael
Referenced in: 11 Publications (2011–2021)
Related Software: Dionysus; Perseus; Gudhi; Ripser; GitHub; PHAT; …
Main Fields: Algebraic topology (55-XX); Statistics (62-XX); Numerical analysis (65-XX)

AMIGO

Software Authors:   Eva Balsa-Canto; Julio R. Banga
Referenced in: 7 Publications (2015–2021)
Related Software: Data2Dynamics; PESTO; COPASI; R; pyPESTO; PEtab; …
Main Fields: Ordinary differential equations (34-XX); Numerical analysis (65-XX); Operations research, mathematical programming (90-XX)

MNE

Software Authors:   Gramfort, A., Luessi, M., Larson, E., Engemann, D. A., Strohmeier, D., Brodbeck, C.,Parkkonen, L., et al.
Referenced in: 7 Publications (2015–2021)
Related Software: Python; Scikit; EEGLAB; NeuroDSP; Brainstorm; FieldTrip; …
Main Fields: Partial differential equations (35-XX); Statistics (62-XX); Numerical analysis (65-XX)

QUARK

Software Authors:   Yarkhan, A., Kurzak, J., Dongarra, J.
Referenced in: 9 Publications (2012–2017)
Related Software: LAPACK; PLASMA; Cilk; StarPU; libflame; Algorithm 679; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

S+SpatialStats

Software Authors:   Kaluzny, S.P., Vega, S.C., Cardoso, T.P., Shelly, A.A.
Referenced in: 10 Publications (1997–2014)
Related Software: R; R-Geo; S-PLUS; CRAN; gdistance; Splancs; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Computer science (68-XX)

AUTO-MUTE

Software Authors:   Majid Masso, Iosif I. Vaisman
Referenced in: 9 Publications (2010–2016)
Related Software: GPCR-2L; Quat-2L; Cell-PLoc; Cd-hit; GPCR-GIA; AFP-Pred; …
Main Fields: Measure and integration (28-XX); Statistics (62-XX); Computer science (68-XX)

FisPro

Software Authors:   Guillaume, S.; Charnomodic, B.
Referenced in: 4 Publications (2013–2018)
Related Software: FURIA; UCI-ml; C4.5; clusfind; BMDP; Silhouettes; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

MDR

Software Authors:   Hahn L. W.; Ritchie M. D.; Moore J. H.
Referenced in: 5 Publications (2005–2019)
Related Software: ReliefF; SNPStats; logicFS; plspm; PLINK; cpvSNP; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Operations research, mathematical programming (90-XX)

GPTIPS

Software Authors:   Searson DP, Leahy DE, Willis MJ
Referenced in: 6 Publications (2014–2022)
Related Software: Matlab; GSLIB; fda (R); UniProt; WebGestalt; KDDONTO; …
Main Fields: Dynamical systems and ergodic theory (37-XX); Computer science (68-XX); Mechanics of deformable solids (74-XX)

MODELTEST

Software Authors:   Posada D.; Crandall K
Referenced in: 8 Publications (2002–2018)
Related Software: PAML; MrBayes; MUSCLE; jModelTest; MAFFT; BIONJ; …
Main Fields: General and overarching topics; collections (00-XX); Topological groups, Lie groups (22-XX); Probability theory and stochastic processes (60-XX)

rpy2

Software Authors:   Alexander Belopolsky, Brad Chapman, Peter Cock, Dirk Eddelbuettel, Thomas Kluyver, Walter Moreira, Laurent Oget, John Owens, Nicolas Rapin, Grzegorz Slodkowicz, Nathaniel Smith, Gregory Warnes
Referenced in: 1 Publication (2016)
Related Software: R; Python; NumPy; Lmertest; Matplotlib; lme4; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

PyTables

Software Authors:   Alted F, Vilata I, et al.
Referenced in: 3 Publications (2012–2019)
Related Software: NumPy; SciPy; Python; HDF5; Matplotlib; Scikit; …
Main Fields: Partial differential equations (35-XX); Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX)

vcdExtra

Software Authors:   Michael Friendly
Referenced in: 6 Publications (2006–2020)
Related Software: R; ggplot2; gridBase; munsell; dichromat; RColorBrewer; …
Main Fields: Statistics (62-XX); Computer science (68-XX)

changepoint.np

Software Authors:   Kaylea Haynes
Referenced in: 3 Publications (2017–2020)
Related Software: changepoint; R; FDRSeg; ecp; wbs; strucchange; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX)

CORElearn

Software Authors:   Marko Robnik-Sikonja, Petr Savicky
Referenced in: 4 Publications (2013–2022)
Related Software: R; caret; mlr; RWeka; CRAN; nnet; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)

cosmoabc

Software Authors:   E. E. O. Ishida, S. D. P. Vitenti, M. Penna-Lima, J. Cisewski, R. S. de Souza, A. M. M. Trindade, E. Cameron, V. C. Busti, for the COIN collaboration
Referenced in: 4 Publications (2017–2021)
Related Software: abc; emcee; Python; NumCosmo; astroABC; R; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

MutationFinder

Software Authors:   Caporaso JG, Baumgartner WA, Randolph DA, Cohen KB, Hunter L
Referenced in: 0 Publications
Related Software: ProMiner; BRENDA; Bow; MetaCyc; Pfam; BLAST; …
Main Fields:

PADS

Software Authors:   Kathleen Fisher; Robert Gruber
Referenced in: 5 Publications (2010–2020)
Related Software: YAKKER; Excel; hypoparsr; greenery; GitHub; OCaml; …
Main Fields: Computer science (68-XX)

RIVET

Software Authors:   Michael Lesnick, Matthew Wright
Referenced in: 4 Publications (2020–2022)
Related Software: PHAT; Ripser; Eirene; Magma; Macaulay2; CoCoA; …
Main Fields: Commutative algebra (13-XX); Algebraic topology (55-XX); Statistics (62-XX)

RMark

Software Authors:   Jeff Laake; Eldar Rakhimberdiev; Ben Augustine; Daniel Turek
Referenced in: 5 Publications (2012–2018)
Related Software: Program MARK; R; MARK; marked; mra; CARE; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

VFML

Software Authors:   Hulten, G., Domingos, P.
Referenced in: 3 Publications (2011–2017)
Related Software: UCI-ml; MOA; C4.5; KEEL
Main Fields: Statistics (62-XX); Computer science (68-XX)

CodeBERT

Software Authors:   Zhangyin Feng, Daya Guo, Duyu Tang, Nan Duan, Xiaocheng Feng, Ming Gong, Linjun Shou, Bing Qin, Ting Liu, Daxin Jiang, Ming Zhou
Referenced in: 1 Publication (2022)
Related Software: BERT; RoBERTa; Transformers; GLUE; Devign; CodeSearchNet; …
Main Fields: Computer science (68-XX)

GOSim

Software Authors:   Holger Fröhlich
Referenced in: 4 Publications (2011–2017)
Related Software: TRANSFAC; SplitsTree; MrBayes; Tracer; MulRF; iGTP; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)

MITOPRED

Software Authors:   Guda, C.; Guda, P.; Fahy, E.; Subramaniam, S
Referenced in: 1 Publication (2009)
Related Software: ESLpred; Signal-CF; Euk-PLoc; PSLpred; SVM-Prot; HIVcleave; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

MULTILSB

Software Authors:   Akartunali, K.; A.J. Miller
Referenced in: 4 Publications (2009–2013)
Related Software: bc-prod; FEASPUMP; MIPLIB; CuSPLIB; NEOS; MIPLIB2003; …
Main Fields: Operations research, mathematical programming (90-XX)

Phrap

Software Authors:   P. Green
Referenced in: 5 Publications (2001–2008)
Related Software: CAP3; Condor-G; Globus Toolkit; RePS; RepeatMasker; ARACHNE
Main Fields: Probability theory and stochastic processes (60-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

Seglearn

Software Authors:   David M. Burns, Cari M. Whyne
Referenced in: 1 Publication (2020)
Related Software: Python; tslearn; pyts; sktime; GitHub; cesium; …
Main Fields: Computer science (68-XX)

Agents.jl

Software Authors:   Ali R. Vahdati
Referenced in: 1 Publication (2021)
Related Software: Julia; NetLogo; Mesa; HDF5; dantro; paramspace; …
Main Fields: Computer science (68-XX)

BudgetedSVM

Software Authors:   Djuric, Nemanja; Lan, Liang; Vucetic, Slobodan; Wang, Zhuang
Referenced in: 3 Publications (2013–2018)
Related Software: LIBSVM; LIBLINEAR; Matlab; SVMlight; Pegasos; R; …
Main Fields: Statistics (62-XX); Computer science (68-XX)

CRlibm

Software Authors:   Florent de Dinechin; Christoph Lauter; et al.
Referenced in: 4 Publications (2011–2020)
Related Software: kv; Flocq; Alt-Ergo; Why3; Coq; McVol; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

cvDSA

Software Authors:   Susan Gruber;Wang, Yue; Bembom, Oliver; van der Laan, Mark J.
Referenced in: 3 Publications (2007–2010)
Related Software: R; survival; Survey; SAS; geepack; tmleLite; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX)

dcemriS4

Software Authors:   Brandon Whitcher, Volker Schmid, Andrew Thornton
Referenced in: 0 Publications
Related Software: R; oro.nifti; AnalyzeFMRI; CRAN Task Views; oro.dicom; fmri; …
Main Fields:

DMTL

Software Authors:   Mohammed Zaki, Vineet Chaoji, Mohammad Hasan, Nagender Parimi, Saeed Salem
Referenced in: 3 Publications (2005–2008)
Related Software: SPADE; CloseGraph; gSpan; BIDE; CLOSET; PrefixSpan; …
Main Fields: Statistics (62-XX); Computer science (68-XX)

GalSim

Software Authors:   Barnaby Rowe, Mike Jarvis, Rachel Mandelbaum, Gary M. Bernstein, James Bosch, Melanie Simet, Joshua E. Meyers, Tomasz Kacprzak, Reiko Nakajima, Joe Zuntz, Hironao Miyatake, Joerg P. Dietrich, Robert Armstrong, Peter Melchior, Mandeep S. S. Gill
Referenced in: 1 Publication (2019)
Related Software: Python; Astropy; FSPS; Matplotlib; NumPy; SciPy; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Astronomy and astrophysics (85-XX)

GGL

Software Authors:   Mann, M., Ekker, H., Flamm, C.
Referenced in: 3 Publications (2016–2018)
Related Software: VMQL; RuleMerger; gSpan; ATL; Henshin; pgf; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

GSGP

Software Authors:   Castelli, M., Silva, S., Vanneschi, L.
Referenced in: 4 Publications (2016–2017)
Related Software: GPLAB; ECJ; Concorde; alr3
Main Fields: Statistics (62-XX); Computer science (68-XX); Geophysics (86-XX)

LibTIFF

Software Authors:   Sam Leffler, Frank Warmerdam, Andrey Kiselev, Bob Friesenhahn, Joris Van Damme, Lee Howard
Referenced in: 1 Publication (2016)
Related Software: TauFactor; FFTW; DandeLiion; PoreSpy; PyBaMM; AMReX; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX)

Mtreemix

Software Authors:   Niko Beerenwinkel; Jörg Rahnenführer; Rolf Kaiser; Daniel Hoffmann; Joachim Selbig; Thomas Lengauer
Referenced in: 4 Publications (2006–2019)
Related Software: R; S-Cluster++; SplitsTree; MrBayes; MCScanX; CYNTENATOR; …
Main Fields: General and overarching topics; collections (00-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

N4itk

Software Authors:   Nicholas J. Tustison, Brian B. Avants, Philip A. Cook, Yuanjie Zheng, Alexander Egan, Paul A. Yushkevich, James C. Gee
Referenced in: 4 Publications (2016–2020)
Related Software: U-Net; pix2pix; CycleGAN; PyTorch; Caffe; BrainWeb; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

SGX

Software Authors:   Intel Software
Referenced in: 4 Publications (2017–2021)
Related Software: XooTools; PRESENT; Azure; Helios; F*; Fable; …
Main Fields: Computer science (68-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX); Information and communication theory, circuits (94-XX)

simcausal

Software Authors:   Oleg Sofrygin; Mark van der Laan; Romain Neugebauer
Referenced in: 3 Publications (2018–2020)
Related Software: R; ltmle; arm; tmle; glmnet; SuperLearner; …
Main Fields: Statistics (62-XX); Computer science (68-XX)

TinkerCell

Software Authors:   Deepak Chandran, Frank T. Bergmann, Herbert M. Sauro
Referenced in: 2 Publications (2014–2015)
Related Software: TABASCO; lpSolve; SUNDIALS; SciPy; ProMoT; SynBioSS; …
Main Fields: Ordinary differential equations (34-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

YANA

Software Authors:   Roland Schwarz, Patrick Musch, Axel von Kamp, Bernd Engels, Heiner Schirmer, Stefan Schuster, Thomas Dandekar
Referenced in: 4 Publications (2007–2012)
Related Software: Metatool; FluxAnalyzer; efmtool; FFCA
Main Fields: Combinatorics (05-XX); Biology and other natural sciences (92-XX)

BamTools

Software Authors:   Barnett D. W., Garrison E. K., Quinlan A. R., Stromberg M. P., Marth G. T.
Referenced in: 1 Publication (2019)
Related Software: LEVIATHAN; Samtools; LRez; BioClojure; BioRuby
Main Fields: Biology and other natural sciences (92-XX)

code2seq

Software Authors:   Uri Alon, Shaked Brody, Omer Levy, Eran Yahav
Referenced in: 0 Publications
Related Software: Python; CodeBERT; VulDeePecker; RoBERTa; fairseq; AllenNLP; …
Main Fields:

Cornac

Software Authors:   Salah, Aghiles; Truong, Quoc-Tuan; Lauw, Hady W.
Referenced in: 1 Publication (2020)
Related Software: Python; OpenRec; Spotlight; Surprise; LibRec; MyMediaLite; …
Main Fields: Computer science (68-XX)

cPath

Software Authors:   Ethan G Cerami, Gary D Bader, Benjamin E Gross, Chris Sander
Referenced in: 1 Publication (2013)
Related Software: TRANSFAC; KEGG; CellSys; SBRML; BioModels; CellML; …
Main Fields: Dynamical systems and ergodic theory (37-XX); Biology and other natural sciences (92-XX)

CXXR

Software Authors:   Runnalls, Andrew R.
Referenced in: 2 Publications (2011–2013)
Related Software: R; Rserve; RGCCTranslationUnit; inline; RcppArmadillo; RcppGSL; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

3DEX

Software Authors:   Leistedt, B., Rassat, A., Refregier, A., Starck, J.-L.
Referenced in: 3 Publications (2016–2020)
Related Software: nbodykit; Healpix; dverk; ASCL; sapa
Main Fields: Functions of a complex variable (30-XX); Operator theory (47-XX); Optics, electromagnetic theory (78-XX)

drake

Software Authors:   William Michael Landau; et.al.
Referenced in: 0 Publications
Related Software: R; clustermq; remake; rslurm; future.batchtools; batchtools; …
Main Fields:

HTqPCR

Software Authors:   Dvinge H, Bertone P
Referenced in: 1 Publication (2018)
Related Software: R; qpcR; NormqPCR; ReadqPCR; pcr; ggplot2; …
Main Fields: Biology and other natural sciences (92-XX)

IGTools

Software Authors:   Bonnici, V. ;V. Manca
Referenced in: 3 Publications (2017–2021)
Related Software:
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

JNCC2

Software Authors:   Giorgio Corani; Marco Zaffalon
Referenced in: 2 Publications (2010–2012)
Related Software: UCI-ml
Main Fields: Statistics (62-XX); Computer science (68-XX)

NEMO

Software Authors:   Teuben, P. J.
Referenced in: 3 Publications (2002–2013)
Related Software: NBODY4; NBODY6; RatImage; HOT
Main Fields: Numerical analysis (65-XX); Astronomy and astrophysics (85-XX)

NERF

Software Authors:   Graham,A. D.; Mallinson,G. D., AERONAUTICAL RESEARCH LABS MELBOURNE (AUSTRALIA)
Referenced in: 3 Publications (1984–2008)
Related Software: clusfind
Main Fields: Computer science (68-XX); Mechanics of deformable solids (74-XX); Operations research, mathematical programming (90-XX)

OceanVAR

Software Authors:   D’Amore, L., Arcucci, R., Carracciuolo, L., Murli, A.
Referenced in: 3 Publications (2012–2017)
Related Software: UTV; mctoolbox; Regularization tools; L-BFGS
Main Fields: Operator theory (47-XX); Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX)

RProtoBuf

Software Authors:   Romain Francois, Dirk Eddelbuettel, Murray Stokely and Jeroen Ooms
Referenced in: 0 Publications
Related Software: R; Rserve; Rcpp; Blitz++; RGCCTranslationUnit; inline; …
Main Fields:

S+ FDA

Software Authors:   Clarkson, Douglas B.; Fraley, Chris; Gu, Charles C.; Ramsay, James O.
Referenced in: 3 Publications (2002–2005)
Related Software: S-PLUS; fda (R); R; Matlab
Main Fields: Statistics (62-XX)

SplitMEM

Software Authors:   S. Marcus, H. Lee, M. C. Schatz
Referenced in: 3 Publications (2017–2022)
Related Software: tbwt; BWA; Rainbowfish; deBGA; vg; HISAT
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

succinct

Software Authors:   Ottaviano, G.
Referenced in: 3 Publications (2013–2017)
Related Software: libcds; SDSL; GitHub; sux; bitvector; dbwt; …
Main Fields: Computer science (68-XX)

UCSC genome browser

Software Authors:   Zweig AS, Karolchik D, Kuhn RM et al
Referenced in: 3 Publications (2002–2017)
Related Software: MrBayes; BLASTZ; OXBench; PatternHunter; BLAT; T-coffee; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

abn

Software Authors:   Gilles Kratzer, Fraser Ian Lewis, Reinhard Furrer, Marta Pittavino
Referenced in: 1 Publication (2022)
Related Software: Rgraphviz; rjags; gRbase; catnet; bnlearn; R; …
Main Fields: Statistics (62-XX); Computer science (68-XX)

Bambino

Software Authors:   . M.N. Edmonson, J. Zhang, C. Yan, R.P. Finney, D.M. Meerzaman, K.H. Buetow
Referenced in: 1 Publication (2014)
Related Software: UniProt; WebGestalt; KDDONTO; Protege; GeoSVM; GAMES; …
Main Fields: General and overarching topics; collections (00-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

bgaPEST

Software Authors:   Michael N. Fienen, Marco D’Oria, John E. Doherty, Randall J. Hunt
Referenced in: 2 Publications (2018–2020)
Related Software: MODFLOW-2000; MODFLOW; AS 47; EnKF
Main Fields: Statistics (62-XX); Geophysics (86-XX)

coroICA

Software Authors:   Pfister, Niklas; Weichwald, Sebastian; Bühlmann, Peter; Schölkopf, Bernhard
Referenced in: 2 Publications (2019–2022)
Related Software: Noise2Self; Noise2Void; CAPUSHE; Python; Scikit; EEGLAB; …
Main Fields: Statistics (62-XX)

dalex

Software Authors:   Hubert Baniecki, Wojciech Kretowicz, Piotr Piatyszek, Jakub Wisniewski, Przemyslaw Biecek
Referenced in: 0 Publications
Related Software: InterpretML; AI Explainability 360; Python; Espresso; NIMEFI; Alibi Explain; …
Main Fields:

Dataverse

Software Authors:   IQSS; Gary King; Mercè Crosas; Leonid Andreev, Danny Brooke, Gustavo Durand, Phil Durbin, Matthew Dunlap, Stephen Kraffmiller
Referenced in: 2 Publications (2016–2019)
Related Software:
Main Fields: Statistics (62-XX); Computer science (68-XX); Information and communication theory, circuits (94-XX)

DMAP

Software Authors:   Stockwell, P. A., A. Chatterjee, E. J. Rodger. I. M. Morison
Referenced in: 2 Publications (2016)
Related Software: MethylSig; HMM-Fisher; COHCAP; SAAP-RRBS; MOABS; HMM-DM; …
Main Fields: Probability theory and stochastic processes (60-XX); Biology and other natural sciences (92-XX)

drms

Software Authors:   Kolja Glogowski; Monica G. Bobra; Nitin Choudhary; Arthur B. Amezcua; Stuart J. Mumford
Referenced in: 0 Publications
Related Software: SunPy; Python; Astropy; CuPy; aiapy
Main Fields:

Genoviz

Software Authors:   Helt GA, Nicol JW, Erwin E, Blossom E, Blanchard SG, Chervitz SA et al
Referenced in: 1 Publication (2016)
Related Software: Galaxy; ROAST; featureCounts; Rsubread; recount; PROPER; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

GPUSort

Software Authors:   Naga K. Govindaraju, Nikunj Raghuvanshi, Michael Henson, Dinesh Manocha
Referenced in: 2 Publications (2008–2010)
Related Software: Find; Quicksort; GPU-ABiSort; GPUTeraSort; CUDA; Cg
Main Fields: Computer science (68-XX); Information and communication theory, circuits (94-XX)

IDRLnet

Software Authors:   Wei Peng, Jun Zhang, Weien Zhou, Xiaoyu Zhao, Wen Yao, Xiaoqian Chen
Referenced in: 1 Publication (2022)
Related Software: DeepXDE; PyDEns; SimNet; SciANN; NeuroDiffEq; TensorFlow; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

Jstacs

Software Authors:   Grau, Jan; Keilwagen, Jens; Gohr, André; Haldemann, Berit; Posch, Stefan; Grosse, Ivo
Referenced in: 1 Publication (2019)
Related Software: UniProt; JASPAR; UCI-ml; Java-ML; SHOGUN
Main Fields: Computer science (68-XX); Operations research, mathematical programming (90-XX)

LIBMF

Software Authors:   Chin, Wei-Sheng; Yuan, Bo-Wen; Yang, Meng-Yuan; Zhuang, Yong; Juan, Yu-Chin; Lin, Chih-Jen
Referenced in: 2 Publications (2016–2020)
Related Software: node2vec; LowRankModels; GloVe; Adam; AdaGrad; fastFM; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Statistics (62-XX); Numerical analysis (65-XX)