×

Found 843 Software Packages (Results 1–100)

Matlab

Software Authors:   MathWorks Inc
Referenced in: 12,958 Publications (1982–2024)
Related Software: Simulink; LMI toolbox; Maple; MATLAB ODE suite; ode23; ode45; …
Main Fields: Ordinary differential equations (34-XX); Partial differential equations (35-XX); Numerical analysis (65-XX)

CGAL

Software Authors:   CGAL Editorial Board
Referenced in: 370 Publications (2000–2022)
Related Software: LEDA; 2D triangulations; 2D Arrangement; Triangle; Boost; Qhull; …
Main Fields: Convex and discrete geometry (52-XX); Numerical analysis (65-XX); Computer science (68-XX)

ParaView

Software Authors:   Kitware
Referenced in: 223 Publications (2008–2022)
Related Software: Gmsh; PETSc; FEniCS; Python; Matlab; VTK; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

t-SNE

Software Authors:   Laurens van der Maaten, Geoffrey Hinton
Referenced in: 178 Publications (2008–2022)
Related Software: word2vec; ImageNet; AlexNet; UMAP; GitHub; DeepWalk; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

Scilab

Software Authors:   Scilab Enterprises; Ricardo Fabbri
Referenced in: 169 Publications (1999–2022)
Related Software: Matlab; Octave; R; Mathematica; Maple; Scicos; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

MatrixMarket

Software Authors:   Boisvert, R., Pozo, R., Remington, K., Barrett, R., Dongarra, J
Referenced in: 165 Publications (1999–2022)
Related Software: SparseMatrix; Matlab; Harwell-Boeing sparse matrix collection; JDQZ; JDQR; LAPACK; …
Main Fields: Combinatorics (05-XX); Linear and multilinear algebra; matrix theory (15-XX); Numerical analysis (65-XX)

lattice

Software Authors:   Deepayan Sarkar
Referenced in: 57 Publications (2000–2021)
Related Software: R; ggplot2; CRAN; lme4; MASS (R); nlme; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)

VMD

Software Authors:   Andrew Dalke, William Humphrey, Klaus Schulten
Referenced in: 75 Publications (1999–2023)
Related Software: NAMD; Gromacs; CHARMM; PyMOL; RasMol; APBS; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

Healpix

Software Authors:   K. M. Górski; E. Hivon; A. J. Banday; B. D. Wandelt; F. K. Hansen; M. Reinecke; M. Bartelmann
Referenced in: 74 Publications (2007–2022)
Related Software: healpy; Python; CAMB; Matplotlib; DLMF; NumPy; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

Tensorlab

Software Authors:   L. Sorber, M. Van Barel, L. De Lathauwer
Referenced in: 81 Publications (2013–2022)
Related Software: TensorToolbox; Matlab; TT Toolbox; RandNLA; Complex Optimization Toolbox; Algorithm 862; …
Main Fields: Algebraic geometry (14-XX); Linear and multilinear algebra; matrix theory (15-XX); Numerical analysis (65-XX)

IPython

Software Authors:   F. Pérez, B.E. Granger
Referenced in: 50 Publications (2008–2022)
Related Software: Python; Matplotlib; SciPy; NumPy; Jupyter; Scikit; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Fluid mechanics (76-XX)

PLINK

Software Authors:   Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MAR, Bender D et al
Referenced in: 58 Publications (1994–2022)
Related Software: R; GCTA; Eigenstrat; STRUCTURE; Haploview; pi-MASS; …
Main Fields: Mathematical logic and foundations (03-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

Gephi

Software Authors:   M. Bastian, S. Heymann, M. Jacomy
Referenced in: 57 Publications (2012–2022)
Related Software: NetworkX; ForceAtlas2; igraph; Cytoscape; Pajek; R; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

statnet

Software Authors:   Mark S. Handcock; David R. Hunter; Carter T. Butts; Steven M. Goodreau; Pavel N. Krivitsky; Martina Morris
Referenced in: 39 Publications (2008–2022)
Related Software: R; ergm; network; sna; igraph; Pajek; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Numerical analysis (65-XX)

EEGLAB

Software Authors:   A Delorme; S Makeig
Referenced in: 27 Publications (2005–2022)
Related Software: Matlab; FieldTrip; Scikit; R; Brainstorm; FastICA; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

GENSMAC

Software Authors:   Tom'e, M. F.; Filho, A. C.; Cuminato, J. A.; Mangiavacchi, N.; McKee, S.
Referenced in: 61 Publications (1994–2020)
Related Software: GENSMAC3D; FREEFLOW; Flow-3D; SOLA-VOF; SOLA; SLIC; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

VisIt

Software Authors:   H. Childs, E. Brugger, B. Whitlock, J. Meredith, S. Ahern, D. Pugmire, K. Biagas, M. Miller, C. Harrison, G. H. Weber, H. Krishnan, T. Fogal, A. Sanderson, C. Garth, E. W. Bethel, D. Camp, O. Rübel, M. Durant, J. M. Favre, P. Navratil
Referenced in: 53 Publications (2011–2022)
Related Software: ParaView; PETSc; Python; Gmsh; FEniCS; hypre; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

GiD

Software Authors:   R Ribó, MA de Riera Pasenau, E Escolano; CIMNE
Referenced in: 55 Publications (2000–2022)
Related Software: COMET; deal.ii; ParaView; PETSc; FreeFem++; FEniCS; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

ROOT

Software Authors:   René Brun; Fons Rademakers
Referenced in: 31 Publications (2001–2022)
Related Software: PYTHIA8; Python; GEANT4; DELPHES; ROOT; HepMC; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Quantum theory (81-XX)

huge

Software Authors:   Zhao, Tuo; Liu, Han; Roeder, Kathryn; Lafferty, John; Wasserman, Larry
Referenced in: 45 Publications (2012–2023)
Related Software: glasso; R; igraph; BDgraph; Rcpp; MIM; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

BioGRID

Software Authors:   C. Stark, B. Breitkreutz, T. Reguly, L. Boucher, A. Breitkreutz, M. Tyers
Referenced in: 32 Publications (2008–2019)
Related Software: KEGG; IntAct; Cytoscape; Pfam; MCODE; R; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

GGobi

Software Authors:   Debby Swayne; Di Cook; Duncan Temple Lang; Andreas Buja
Referenced in: 34 Publications (2003–2022)
Related Software: R; XGobi; rggobi; ggplot2; RGtk2; iplots; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

S+WAVELETS

Software Authors:   Andrew G. Bruce; Hong-ye Gao
Referenced in: 36 Publications (1997–2022)
Related Software: glmnet; PDCO; sparsenet; WaveLab; reccv; Julia; …
Main Fields: Harmonic analysis on Euclidean spaces (42-XX); Statistics (62-XX); Numerical analysis (65-XX)

STATISTICA

Software Authors:   StatSoft, Inc.
Referenced in: 35 Publications (1994–2020)
Related Software: R; SPSS; Cell-PLoc; SAS; Matlab; SYSTAT; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

UMAP

Software Authors:   Leland McInnes, John Healy, James Melville
Referenced in: 32 Publications (2020–2022)
Related Software: t-SNE; Scikit; word2vec; Python; LargeVis; UCI-ml; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

Chimera

Software Authors:   Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, Meng EC, Ferrin TE
Referenced in: 29 Publications (2006–2023)
Related Software: BLAST; PSI-BLAST; VMD; PyMOL; AutoDock; Gromacs; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Fluid mechanics (76-XX)

XGobi

Software Authors:   Swayne DF, Cook D, Buja A
Referenced in: 27 Publications (1995–2020)
Related Software: R; GGobi; MANET; ggplot2; Mondrian; iplots; …
Main Fields: Convex and discrete geometry (52-XX); Statistics (62-XX); Numerical analysis (65-XX)

OVITO

Software Authors:   Alexander Stukowski
Referenced in: 32 Publications (2012–2022)
Related Software: Scikit; LAMMPS; VMD; Python; CHARMM; Adam; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Mechanics of deformable solids (74-XX)

Surveillance

Software Authors:   Michael Höhle, Sebastian Meyer, Michaela Paul, Andrea Riebler, S. Steiner, M. Virtanen, Valentin Wimmer, T. Correa, M. Hofmann, C. Lang
Referenced in: 25 Publications (2005–2022)
Related Software: R; SurvStat@RKI; maptools; GMRFLib; EpiEstim; epinet; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

OSIRIS

Software Authors:   Fonseca, R.A.; Silva, L.O.; Tsung, F.S.; Decyk, V.K.; Lu, W.; Ren, C.; Mori, W.B.; Deng, S.; Lee, S.; Katsouleas, T.; Adam, J.C.
Referenced in: 33 Publications (2002–2022)
Related Software: QUICKPIC; VORPAL; PSC; UPIC-EMMA; OOPIC; MPI; …
Main Fields: Numerical analysis (65-XX); Fluid mechanics (76-XX); Optics, electromagnetic theory (78-XX)

Mayavi

Software Authors:   P. Ramachandran; G. Varoquaux
Referenced in: 23 Publications (2007–2022)
Related Software: MayaVi; Python; Matplotlib; SciPy; NumPy; VTK; …
Main Fields: Dynamical systems and ergodic theory (37-XX); Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX)

LBIE

Software Authors:   Y. Zhang, C. Bajaj; Computational Visualization Center (CVC)
Referenced in: 28 Publications (2005–2023)
Related Software: CUBIT; Mesquite; QTM; Chimera; FEAPpv; VMD; …
Main Fields: Combinatorics (05-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

MayaVi

Software Authors:   Prabhu Ramachandran
Referenced in: 22 Publications (2003–2022)
Related Software: Mayavi; Matplotlib; Python; SciPy; VTK; NumPy; …
Main Fields: Dynamical systems and ergodic theory (37-XX); Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX)

GVF

Software Authors:   Marshall, M.S.; Herman, I.; Melançon, G.
Referenced in: 20 Publications (2001–2022)
Related Software: IsoMatch; AMPL; Prefuse; TopoLayout; PRMLT; FAIS; …
Main Fields: Combinatorics (05-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

AFNI

Software Authors:   Robert W. Cox
Referenced in: 16 Publications (2008–2022)
Related Software: FSL; R; FMRISTAT; FLIRT; RNiftyReg; AnalyzeFMRI; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

LS-SVMlab

Software Authors:   J.A.K. Suykens, T. Van Gestel, J. De Brabanter, B. De Moor, J. Vandewalle
Referenced in: 25 Publications (2006–2020)
Related Software: Matlab; UCI-ml; LIBSVM; RSVM; SVM Toolbox; longmemo; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Mechanics of deformable solids (74-XX)

Seaborn

Software Authors:   M. Waskom, O. Botvinnik, D. Okane, P. Hobson, David, Y. Halchenko, S. Lukauskas, J. B. Cole, J. Warmenhoven, J. de Ruiter, S. Hoyer, J. Vanderplas, S. Villalba, G. Kunter, E. Quintero, M. Martin, A. Miles, K. Meyer, T. Augspurger, T. Yarkoni, P. Bachant, M. Williams, C. Evans, C. Fitzgerald, Brian, D. Wehner, G. Hitz, E. Ziegler, A. Qalieh, and A. Lee.
Referenced in: 8 Publications (2018–2022)
Related Software: Python; Matplotlib; NumPy; SciPy; pandas; Scikit; …
Main Fields: Algebraic geometry (14-XX); Statistics (62-XX); Computer science (68-XX)

WGCNA

Software Authors:   Peter Langfelder; Steve Horvath; Chaochao Cai, Jun Dong, Jeremy Miller, Lin Song, Andy Yip, Bin Zhang
Referenced in: 20 Publications (2013–2021)
Related Software: R; glasso; KEGG; igraph; dynamicTreeCut; ggplot2; …
Main Fields: Combinatorics (05-XX); Linear and multilinear algebra; matrix theory (15-XX); Partial differential equations (35-XX)

Plotly

Software Authors:   Alex Johnson, Jack Parmer, Chris Parmer, Matthew Sundquis
Referenced in: 10 Publications (1982–2022)
Related Software: Python; NumPy; Matplotlib; pandas; R; SciPy; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

FSDA

Software Authors:   Riani M, Perrotta D, Torti F
Referenced in: 22 Publications (2013–2022)
Related Software: robustbase; TCLUST; R; mvBACON; rrcov; mclust; …
Main Fields: Statistics (62-XX)

vcd

Software Authors:   David Meyer; Achim Zeileis; Kurt Hornik; Michael Friendly
Referenced in: 15 Publications (2009–2020)
Related Software: R; ggplot2; lattice; colorspace; boot; latticeExtra; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

GeoFEM

Software Authors:   Fujishiro, Issei; Chen, Li; Takeshima, Yuriko; Nakamura, Hiroko; Suzuki, Yasuko
Referenced in: 22 Publications (2001–2022)
Related Software: PETSc; Eigtool; OpenDX; ADVENTURE Autogl; VTK; METIS; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Fluid mechanics (76-XX)

Haploview

Software Authors:   J. C. Barrett; B. Fry; J. Maller; M. J. Daly
Referenced in: 19 Publications (2007–2022)
Related Software: PLINK; R; LocusZoom; qqman; CRAN; LdCompare; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Operations research, mathematical programming (90-XX)

MT3DMS

Software Authors:   Zheng, C., Wang, P.P.
Referenced in: 23 Publications (2005–2022)
Related Software: MODFLOW; MODFLOW-2000; HYTEC; HYDRUS; HYDROGEOCHEM; GSLIB; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

SOM_PAK

Software Authors:   Kohonen, T., Hynninen, J., Kangas, J., Laaksonen, J.
Referenced in: 17 Publications (1995–2016)
Related Software: SOM; UCI-ml; LVQ_PAK; SOMLib; EMD; VisualSEEk; …
Main Fields: Dynamical systems and ergodic theory (37-XX); Statistics (62-XX); Computer science (68-XX)

qgraph

Software Authors:   Sacha Epskamp, Giulio Costantini, Angelique O. J. Cramer, Lourens J. Waldorp, Verena D. Schmittmann, Denny Borsboom
Referenced in: 17 Publications (2014–2022)
Related Software: R; mgm; igraph; glasso; psych; bnlearn; …
Main Fields: General and overarching topics; collections (00-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

VIM

Software Authors:   Matthias Templ, Andreas Alfons, Alexander Kowarik, Bernd Prantner
Referenced in: 13 Publications (2015–2021)
Related Software: R; MICE; Amelia; impute; Stata; SPSS; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

GrGen

Software Authors:   Geiß, Rubino; Batz, Gernot Veit; Grund, Daniel; Hack, Sebastian; Szalkowski, Adam
Referenced in: 15 Publications (2006–2020)
Related Software: GROOVE; AGG; PROGRES; Graph transformation benchmarks; Fujaba; GP 2; …
Main Fields: General and overarching topics; collections (00-XX); Mathematical logic and foundations (03-XX); Computer science (68-XX)

NodeTrix

Software Authors:   Nathalie Henry, Jean-Daniel Fekete, Michael J. McGuffin
Referenced in: 16 Publications (2010–2021)
Related Software: ChordLink; ThemeRiver; Algorithm 447; PIWI; MoleView; GitHub; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

PELLPACK

Software Authors:   Houstis, E.N.; Rice, J.R.; Weerawarana, S.; Catlin, A.C.; Papachiou, P.; Wang, K.-Y.; Gaitatzes, M.
Referenced in: 18 Publications (1998–2008)
Related Software: ELLPACK; PYTHIA; LAPACK; SciNapse; Mathematica; METIS; …
Main Fields: General and overarching topics; collections (00-XX); Partial differential equations (35-XX); Calculus of variations and optimal control; optimization (49-XX)

AMReX

Software Authors:   Ann Almgren
Referenced in: 15 Publications (2019–2022)
Related Software: p4est; Chombo; Gerris; ENZO; ForestClaw; RAMSES; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

GAP

Software Authors:   Wu, H.; Tien, Y.; Chen, C.
Referenced in: 18 Publications (2002–2019)
Related Software: seriation; PermutMatrix; R; UCI-ml; ggplot2; Silhouettes; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

GENSMAC3D

Software Authors:   Tome, Murilo F; et. al.
Referenced in: 19 Publications (2001–2017)
Related Software: GENSMAC; FREEFLOW; SOLA-VOF; SOLA; SLIC; RADAU; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

ggmap

Software Authors:   David Kahle; Hadley Wickham
Referenced in: 14 Publications (2014–2022)
Related Software: ggplot2; R; randomForest; leaflet; RColorBrewer; e1071; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Numerical analysis (65-XX)

ASKALON

Software Authors:   Thomas Fahringer; Alexandru Jugravu; Sabri Pllana; Radu Prodan; Clovis Seragiotto Jr; Hong-Linh Truong
Referenced in: 6 Publications (2002–2012)
Related Software: Java CoG Kit; SCALEA; GridFlow; Globus Toolkit; Condor-G; Taverna; …
Main Fields: Computer science (68-XX)

moveHMM

Software Authors:   Theo Michelot, Roland Langrock, Toby Patterson, Eric Rexstad
Referenced in: 14 Publications (2016–2022)
Related Software: R; momentuHMM; circular; ctmm; crawl; CircStats; …
Main Fields: General and overarching topics; collections (00-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

ShapeNet

Software Authors:   Angel X. Chang, Thomas Funkhouser, Leonidas Guibas, Pat Hanrahan, Qixing Huang, Zimo Li, Silvio Savarese, Manolis Savva, Shuran Song, Hao Su, Jianxiong Xiao, Li Yi, Fisher Yu
Referenced in: 12 Publications (2018–2021)
Related Software: 3D-R2N2; PointNet; Adam; Pixel2Mesh; OpenDR; SoftRas; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Mechanics of deformable solids (74-XX)

Amira

Software Authors:   VSG - Visualization Sciences Group
Referenced in: 15 Publications (2005–2021)
Related Software: ZIBAmira; DUNE; UG; ISTL; Kaskade7; VTK; …
Main Fields: Combinatorics (05-XX); Partial differential equations (35-XX); Numerical analysis (65-XX)

ArcGIS Desktop

Software Authors:   –
Referenced in: 8 Publications (2008–2019)
Related Software: R; ggplot2; rgdal; geoR; spBayes; GRASS GIS; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Geophysics (86-XX)

FAdo

Software Authors:   André Almeida; Marco Almeida; José Alves; Nelma Moreira; Rogério Reis
Referenced in: 15 Publications (2010–2021)
Related Software: GUItar; Python; Vaucanson; OpenFst; Regular Sets; PDCoq; …
Main Fields: Mathematical logic and foundations (03-XX); Computer science (68-XX); Information and communication theory, circuits (94-XX)

SMART

Software Authors:   Letunic, I., Copley, R.R., Schmidt, S., Ciccarelli, F.D., Doerks, T., Schultz, J., Ponting, C.P., Bork, P.
Referenced in: 7 Publications (2006–2019)
Related Software: Pfam; UniProt; PSI-BLAST; ClustalW; PROSITE; BLAST; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Computer science (68-XX)

GAZEBO

Software Authors:   Koenig, N.; Howard, H.
Referenced in: 11 Publications (2006–2022)
Related Software: MuJoCo; GitHub; ROS; OpenAI Gym; AirSim; Matlab; …
Main Fields: Computer science (68-XX); Mechanics of particles and systems (70-XX); Biology and other natural sciences (92-XX)

Mondrian

Software Authors:   Martin Theus
Referenced in: 11 Publications (2005–2019)
Related Software: R; MANET; GGobi; XGobi; iplots; ViSta; …
Main Fields: History and biography (01-XX); Statistics (62-XX); Numerical analysis (65-XX)

Open CASCADE

Software Authors:   –
Referenced in: 15 Publications (2007–2021)
Related Software: Intel TBB; Trilinos; Gmsh; WorkStream; muparser; p4est; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

Seesoft

Software Authors:   Eick, S.; Jr., J. Steffen
Referenced in: 8 Publications (1995–2011)
Related Software: Codecrawler; Hipikat; Jove; CVSscan; Vizz3D; ThemeRiver; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

SoDA

Software Authors:   Chambers, John M.
Referenced in: 14 Publications (2004–2018)
Related Software: R; lattice; ggplot2; RGraphics; rrcov; colorspace; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)

Tulip

Software Authors:   David, Auber
Referenced in: 12 Publications (2002–2019)
Related Software: Graphviz; Pajek; Cytoscape; Gephi; visone; GROOVE; …
Main Fields: Combinatorics (05-XX); Geometry (51-XX); Convex and discrete geometry (52-XX)

BioJava

Software Authors:   Andreas Prlic; Andrew Yates; Spencer E. Bliven; Peter W. Rose; Julius Jacobsen; Peter V. Troshin; Mark Chapman; Jianjiong Gao; Chuan Hock Koh; Sylvain Foisy; Richard Holland; Gediminas Rimsa; Michael L. Heuer; H. Brandstatter-Muller; Philip E. Bourne; Scooter Willis
Referenced in: 5 Publications (2009–2017)
Related Software: Biopython; bioperl; MMTK; ProDy; Python; Taverna; …
Main Fields: General and overarching topics; collections (00-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

D3.js

Software Authors:   Bostock, M
Referenced in: 5 Publications (2017–2022)
Related Software: Python; R; JavaScript; shiny; ggplot2; DALEX; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Algebraic topology (55-XX)

STPRTool

Software Authors:   Vojtech Franc
Referenced in: 10 Publications (2006–2015)
Related Software: Matlab; UCI-ml; COIL-100; ElemStatLearn; C4.5; RegEM; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Geophysics (86-XX)

ZIFA

Software Authors:   Pierson, E.; Yau, C.
Referenced in: 13 Publications (2018–2021)
Related Software: CIDR; t-SNE; MAST; SNN-Cliq; zinbwave; DESeq2; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

Ebimage

Software Authors:   Pau, Grégoire; Fuchs, Florian; Sklyar, Oleg; Boutros, Michael; Huber, Wolfgang
Referenced in: 6 Publications (2015–2021)
Related Software: R; AnalyzeFMRI; oro.nifti; oro.dicom; imager; RNiftyReg; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

Muxviz

Software Authors:   M. De Domenico, M. A. Porter, A. Arenas
Referenced in: 9 Publications (2017–2022)
Related Software: GenLouvain; sna; igraph; R; multiplex; RSiena; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

oro.nifti

Software Authors:   Brandon Whitcher, Volker Schmid, Andrew Thornton, Karsten Tabelow, Jon Clayden, John Muschelli
Referenced in: 1 Publication (2019)
Related Software: R; oro.dicom; adimpro; fmri; AnalyzeFMRI; fslr; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX); Information and communication theory, circuits (94-XX)

PAVER

Software Authors:   Bussieck, Michael R.; Dirkse, Steven P.; Vigerske, Stefan
Referenced in: 11 Publications (2003–2022)
Related Software: GAMS; MINLPLib; ANTIGONE; DICOPT; SCIP; Benchmarks for Optimization Software; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

RSEM

Software Authors:   Li B, Dewey CN
Referenced in: 12 Publications (2015–2021)
Related Software: edgeR; Bioconductor; TopHat; R; DEseq; Salmon; …
Main Fields: General and overarching topics; collections (00-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

SOCR

Software Authors:   Ivo D. Dinov
Referenced in: 3 Publications (2014–2019)
Related Software: MotionCharts; R; StatCrunch; WebStat; Statlab; JSci; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

yFiles

Software Authors:   Wiese, Roland; Eiglsperger, Markus; Kaufmann, Michael
Referenced in: 8 Publications (2001–2018)
Related Software: OGDF; Graphviz; Ply; apfloat; expa; anNET; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX)

ZIBAmira

Software Authors:   Stalling, D., Westerhoff, M., Hege, H.C.; Steffen Prohaska; Daniel Baum
Referenced in: 11 Publications (2001–2021)
Related Software: Amira; DUNE; UG; ISTL; VTK; Boost; …
Main Fields: General and overarching topics; collections (00-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

APL2

Software Authors:   IBM
Referenced in: 10 Publications (1988–2012)
Related Software: Knapsack; R; ggplot2; reshape; gdata; lattice; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

Brainstorm

Software Authors:   Tadel, François; Baillet, Sylvain; Mosher, John C.; Pantazis, Dimitrios; Leahy, Richard M.
Referenced in: 8 Publications (2015–2021)
Related Software: FieldTrip; EEGLAB; OpenMEEG; Matlab; Scikit; Python; …
Main Fields: Partial differential equations (35-XX); Statistics (62-XX); Numerical analysis (65-XX)

Dipy

Software Authors:   Garyfallidis E, Brett M, Amirbekian B, Rokem A, van der Walt S, Descoteaux M, Nimmo-Smith I
Referenced in: 9 Publications (2018–2022)
Related Software: FSL; ANTs; NVIDIA PhysX; pandas; Bullet; NetworkX; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Statistics (62-XX); Computer science (68-XX)

JUNG

Software Authors:   O’Madadhain, J., Fisher, D., White, S., Boey, Y.
Referenced in: 6 Publications (2008–2020)
Related Software: Gephi; Mathematica; SNAP; NetworkX; JGraphT; igraph; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Quantum theory (81-XX)

ooDACE

Software Authors:   Couckuyt, Ivo; Dhaene, Tom; Demeester, Piet
Referenced in: 11 Publications (2014–2021)
Related Software: EGO; SUMO; DACE; DiceKriging; GPML; SMS-EMOA; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Statistics (62-XX); Fluid mechanics (76-XX)

OpenDX

Software Authors:   David Thompson, Jeff Braun, Ray Ford
Referenced in: 11 Publications (2002–2016)
Related Software: FEniCS; PETSc; VTK; GitHub; TiledArray; CHARM++; …
Main Fields: Numerical analysis (65-XX); Fluid mechanics (76-XX); Classical thermodynamics, heat transfer (80-XX)

QNet

Software Authors:   S.Grunewald, K.Forslund, A.Dress, V. Moulton
Referenced in: 11 Publications (2008–2020)
Related Software: SplitsTree; iTOL; Noisy; T-coffee; DIALIGN; EMBOSS; …
Main Fields: Combinatorics (05-XX); Convex and discrete geometry (52-XX); Statistics (62-XX)

Beanplot

Software Authors:   Peter Kampstra
Referenced in: 7 Publications (2012–2022)
Related Software: R; ggplot2; qqboxplot; lattice; RColorBrewer; vioplot; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

Bio-SPICE

Software Authors:   Garvey TD, Lincoln P, Pedersen CJ et al
Referenced in: 8 Publications (2005–2014)
Related Software: COPASI; BioModels; Taverna; GEPASI; KEGG; Celldesigner; …
Main Fields: History and biography (01-XX); Numerical analysis (65-XX); Computer science (68-XX)

CiteSpace

Software Authors:   Chaomei Chen
Referenced in: 5 Publications (2014–2021)
Related Software: VOSviewer; CitNetExplorer; DeepWalk; node2vec; word2vec; GenLouvain; …
Main Fields: History and biography (01-XX); Mathematical logic and foundations (03-XX); Combinatorics (05-XX)

ERPWAVELAB

Software Authors:   M. Mørup, L. K. Hansen, S. M. Arnfred
Referenced in: 7 Publications (2010–2022)
Related Software: EEGLAB; Matlab; Algorithm 862; MEA-Tools; ECGlab; HEPLAB; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX)

GUItar

Software Authors:   André Almeida; Marco Almeida; José Alves; Nelma Moreira; Rogério Reis
Referenced in: 9 Publications (2010–2018)
Related Software: FAdo; Python; Vaucanson; OpenFst; Regular Sets; PDCoq; …
Main Fields: Computer science (68-XX); Information and communication theory, circuits (94-XX)

KeTCindy

Software Authors:   Setsuo Takato
Referenced in: 9 Publications (2016–2020)
Related Software: Cinderella; KETpic; LaTeX; Maxima; R; Risa/Asir; …
Main Fields: General and overarching topics; collections (00-XX); Numerical analysis (65-XX); Computer science (68-XX)

starBase

Software Authors:   Li JH, Liu S, Zhou H et al
Referenced in: 9 Publications (2012–2019)
Related Software: LncDisease; lncRNAdb; miRBase; BioGRID; ARACNE; BLAT; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Ordinary differential equations (34-XX)

VCD

Software Authors:   Friendly M; SAS
Referenced in: 5 Publications (2004–2020)
Related Software: R; ViSta; LISP-STAT; SAS; vcd; AER; …
Main Fields: Statistics (62-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

WorkStream

Software Authors:   Turcksin, Bruno; Kronbichler, Martin; Bangerth, Wolfgang
Referenced in: 10 Publications (2016–2021)
Related Software: Trilinos; deal.ii; Intel TBB; p4est; PETSc; muparser; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Mechanics of deformable solids (74-XX)

ARENA

Software Authors:   Rockwell Automation, Inc
Referenced in: 9 Publications (2002–2018)
Related Software: Matlab; SPSS; DFBOX_IMPR; DFLBOX; DFLGEN; OptQuest; …
Main Fields: General and overarching topics; collections (00-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

3D Slicer

Software Authors:   Fedorov A, Beichel R, Kalpathy-Cramer J, Finet J, Fillion-Robin JC, Pujol S, Bauer C, Jennings D, Fennessy F, Sonka M, Buatti J, Aylward S, Miller JV, Pieper S, Kikinis R
Referenced in: 5 Publications (2016–2020)
Related Software: ITK; SWIG; Python; MeshLab; Exposure Render; OWL; …
Main Fields: Partial differential equations (35-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

GOTM

Software Authors:   Bing Zhang, Denise Schmoyer, Stefan Kirov; Jay Snoddy
Referenced in: 6 Publications (2005–2014)
Related Software: FatiGO; KEGG; GOstat; DAVID; Onto-Tools; GOToolBox; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

IPSep-CoLa

Software Authors:   Dwyer, T., Koren, Y., Marriott, K.
Referenced in: 7 Publications (2007–2016)
Related Software: Dunnart; PyGtk; XGobi; Orca; Adaptagrams; rcola; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

JSXGraph

Software Authors:   Gerhäuser, Michael; Wassermann, Alfred
Referenced in: 4 Publications (2011–2014)
Related Software: GeoGebra; Lugares; SageMath; Python; Matplotlib; CindyJS; …
Main Fields: Commutative algebra (13-XX); Geometry (51-XX); Computer science (68-XX)