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Found 1,206 Software Packages (Results 1–100)

AUTO

Software Authors:   Doedel, Eusebius, Alan Champneys, Fabio Dercole, Thomas Fairgrieve, Yuri Kuznetsov, Bart Oldeman, Randy Paffenroth, Bjorn Sandstede, Xianjun Wang, and Chenghai Zhang
Cited in: 959 Publications (1981–2023)
Related Software: AUTO-07P; HomCont; AUTO-86; MATCONT; XPPAUT; Matlab; …
Main Fields: Ordinary differential equations (34-XX); Partial differential equations (35-XX); Dynamical systems and ergodic theory (37-XX)

SparseMatrix

Software Authors:   Davis, Timothy A; Hu, Yifan
Cited in: 743 Publications (1997–2023)
Related Software: LAPACK; mctoolbox; Matlab; METIS; ILUT; HSL; …
Main Fields: Combinatorics (05-XX); Linear and multilinear algebra; matrix theory (15-XX); Numerical analysis (65-XX)

OpenFOAM

Software Authors:   OpenCFD Ltd (ESI Group)
Cited in: 573 Publications (2007–2023)
Related Software: FLUENT; Matlab; GitHub; PETSc; ANSYS-CFX; Spalart-Allmaras; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

FLUENT

Software Authors:   BlueBEAR; University of Birmingham
Cited in: 445 Publications (1998–2023)
Related Software: ANSYS; OpenFOAM; GAMBIT; Matlab; STAR-CCM+; ANSYS-CFX; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

EnKF

Software Authors:   Evensen, Geir; P. Sakov
Cited in: 440 Publications (2003–2022)
Related Software: GSLIB; PRMLT; L-BFGS; Matlab; BayesDA; MRST; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

DYNAMO

Software Authors:   Jay Wright Forrester, Phyllis Fox, Alexander L. Pugh III, Grace Duren
Cited in: 248 Publications (1968–2022)
Related Software: Vensim; STELLA; AnyLogic; NetLogo; Cognizer; SEXTANT; …
Main Fields: Computer science (68-XX); Operations research, mathematical programming (90-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

CHEMKIN

Software Authors:   Sandia National Laboratories; Coltrin, M. E., Kee, R. J., Rupley, F. M., Meeks, E.
Cited in: 262 Publications (1982–2022)
Related Software: TRANSPORT; VODE; PREMIX; GRI-Mech 3.0; Cantera; SENKIN; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Fluid mechanics (76-XX)

NetworkX

Software Authors:   Aric Hagberg, Dan Schult, Pieter Swart
Cited in: 160 Publications (2008–2023)
Related Software: Python; SciPy; NumPy; GitHub; Matplotlib; igraph; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

Dynamics

Software Authors:   Nusse, Helena E.; Yorke, James A.
Cited in: 185 Publications (1994–2022)
Related Software: AUTO; HomCont; Mathematica; DSTool; DMC; TISEAN; …
Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX); Mechanics of particles and systems (70-XX)

PhysioToolkit

Software Authors:   Goldberger AL, Amaral LAN, Glass L, Hausdorff JM, Ivanov PCh, Mark RG, Mietus JE, Moody GB, Peng C-K, Stanley HE
Cited in: 146 Publications (2001–2023)
Related Software: fda (R); BCI2000; R; Matlab; UCI-ml; K2; …
Main Fields: Dynamical systems and ergodic theory (37-XX); Statistics (62-XX); Computer science (68-XX)

Nek5000

Software Authors:   Peplinski, A.; Schlatter, P.; Fischer, P.F.; Henningson, D.S.
Cited in: 160 Publications (2010–2023)
Related Software: Nektar++; SIMSON; Gmsh; FreeFem++; OpenFOAM; PyFR; …
Main Fields: Partial differential equations (35-XX); Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX)

Robust Control Toolbox

Software Authors:   MathWorks; Balas G, Chiang R, Packard A, Safonov M
Cited in: 154 Publications (1989–2023)
Related Software: Matlab; Control System Toolbox; Mu Analysis and Synthesis Toolbox; LMI toolbox; YALMIP; Optimization Toolbox; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Ordinary differential equations (34-XX); Numerical analysis (65-XX)

Robotics

Software Authors:   Peter Corke
Cited in: 134 Publications (2000–2023)
Related Software: YALMIP; Mosek; SeDuMi; Matlab; SDPT3; GloptiPoly; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Mechanics of particles and systems (70-XX)

Gromacs

Software Authors:   Mark James Abraham; Teemu Murtola; Roland Schulz; Szilárd Páll; Jeremy C.Smith; Berk Hess; Erik Lindahl
Cited in: 102 Publications (2002–2023)
Related Software: NAMD; CHARMM; LINCS; AMBER; VMD; CUDA; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

NAS Parallel Benchmarks

Software Authors:   NASA
Cited in: 72 Publications (1992–2018)
Related Software: MPI/MPICH; MPI; CUDA; Intel MPI Benchmarks; CoArray; Jumpshot; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Fluid mechanics (76-XX)

CHARMM

Software Authors:   B. R. Brooks, R. E. Bruccoleri, B. D. Olafson, D. J. States, S. Swaminathan, M. Karplus
Cited in: 102 Publications (1992–2023)
Related Software: Gromacs; NAMD; APBS; AMBER; VMD; MIBPB; …
Main Fields: Numerical analysis (65-XX); Optics, electromagnetic theory (78-XX); Statistical mechanics, structure of matter (82-XX)

K2

Software Authors:   Marco Thiel, Mamen Romano, André Bergner
Cited in: 117 Publications (2004–2022)
Related Software: TISEAN; igraph; Matlab; PhysioToolkit; longmemo; QSIMVN; …
Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX); Statistics (62-XX)

PHAVer

Software Authors:   Frehse, Goran
Cited in: 115 Publications (2005–2022)
Related Software: HyTech; SpaceEx; Uppaal; RSOLVER; HSolver; d/dt; …
Main Fields: Mathematical logic and foundations (03-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

ANSYS-CFX

Software Authors:   www.ansys.com
Cited in: 108 Publications (1998–2022)
Related Software: ANSYS; OpenFOAM; FEATFLOW; FLUENT; STAR-CD; PETSc; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

PDE-Net

Software Authors:   Zichao Long, Yiping Lu, Xianzhong Ma, Bin Dong
Cited in: 109 Publications (2019–2023)
Related Software: DGM; Adam; TensorFlow; PyTorch; AlexNet; ImageNet; …
Main Fields: Partial differential equations (35-XX); Statistics (62-XX); Numerical analysis (65-XX)

DSTool

Software Authors:   J Guckenheimer, BA Meloon, MR Myers, FJ Wicklin, Michael Patra
Cited in: 104 Publications (1992–2022)
Related Software: AUTO; AUTO-86; HomCont; PITCON; MATCONT; LOCBIF; …
Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX)

APBS

Software Authors:   Nathan Baker; J. Andrew McCammon; Michael Holst
Cited in: 93 Publications (2001–2022)
Related Software: MIBPB; tabipb; CHARMM; TABI; PDB2PQR; PBEQ-Solver; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Optics, electromagnetic theory (78-XX)

VMD

Software Authors:   Andrew Dalke, William Humphrey, Klaus Schulten
Cited in: 76 Publications (1999–2023)
Related Software: NAMD; Gromacs; CHARMM; PyMOL; RasMol; APBS; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

PRED_PREY

Software Authors:   Garvie, Marcus R.; Burkardt, John; Morgan, Jeff
Cited in: 87 Publications (2007–2022)
Related Software: Matlab; wavetrain; DistMesh; CutFEM; MATCONT; PRMLT; …
Main Fields: Ordinary differential equations (34-XX); Partial differential equations (35-XX); Dynamical systems and ergodic theory (37-XX)

NAMD

Software Authors:   James Phillips
Cited in: 66 Publications (1999–2022)
Related Software: Gromacs; CHARMM; VMD; AMBER; CUDA; DESMOND; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

SpaceEx

Software Authors:   Goran Frehse, Colas Le Guernic, Alexandre Donzé, Scott Cotton, Rajarshi Ray,Olivier Lebeltel, Rodolfo Ripado, Antoine Girard,Thao Dang, Oded Maler
Cited in: 79 Publications (2011–2022)
Related Software: HyTech; PHAVer; Flow*; KeYmaera; RSOLVER; Ellipsoidal Toolbox; …
Main Fields: Ordinary differential equations (34-XX); Numerical analysis (65-XX); Computer science (68-XX)

LAMMPS

Software Authors:   Plimpton, Steve
Cited in: 66 Publications (1995–2023)
Related Software: Python; Gromacs; NAMD; Peridigm; CUDA; CHARMM; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

ZEUS

Software Authors:   Stone, J. M.; Norman, M. L
Cited in: 73 Publications (1992–2021)
Related Software: HLLE; Athena; NIRVANA; FLASH; VAC; PARAMESH; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

SLMC

Software Authors:   Hugo Vieira; Luís Caires
Cited in: 72 Publications (2003–2022)
Related Software: PIPER; PRISM; KLAIM; Maude; Uppaal; BlenX; …
Main Fields: General and overarching topics; collections (00-XX); Mathematical logic and foundations (03-XX); Computer science (68-XX)

Fluid flow phenomena

Software Authors:   Orlandi, Paolo
Cited in: 73 Publications (1999–2023)
Related Software: FFTW; CaNS; 2DECOMP; incompact3d; GitHub; Spalart-Allmaras; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

AMRCLAW

Software Authors:   M. J. Berger, R. J. LeVeque
Cited in: 70 Publications (1997–2022)
Related Software: CLAWPACK; PARAMESH; GEOCLAW; AMROC; Peano; HE-E1GODF; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

COPASI

Software Authors:   S. Hoops, S. Sahle, R. Gauges, C. Lee, J. Pahle, N. Simus, M. Singhal, L. Xu, P. Mendes, U. Kummer
Cited in: 59 Publications (2008–2022)
Related Software: BioModels; R; BioNetGen; KEGG; Python; SUNDIALS; …
Main Fields: Ordinary differential equations (34-XX); Statistics (62-XX); Computer science (68-XX)

BioNetGen

Software Authors:   Michael L. Blinov; James R. Faeder; Byron Goldstein; William S. Hlavacek
Cited in: 58 Publications (2008–2022)
Related Software: Bio-PEPA; NFsim; COPASI; PySB; BIOCHAM; LBS; …
Main Fields: Ordinary differential equations (34-XX); Probability theory and stochastic processes (60-XX); Computer science (68-XX)

SU2

Software Authors:   T. D. Economon, F. Palacios, S. R. Copeland, T. W. Lukaczyk, J. J. Alonso
Cited in: 59 Publications (2014–2023)
Related Software: OpenFOAM; CoDiPack; FLUENT; GitHub; Gmsh; Spalart-Allmaras; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

EEGLAB

Software Authors:   A Delorme; S Makeig
Cited in: 27 Publications (2005–2022)
Related Software: Matlab; FieldTrip; Scikit; R; Brainstorm; Python; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

Code_Aster

Software Authors:   Électricité de France S.A. (EDF; Electricity of France)
Cited in: 56 Publications (1995–2023)
Related Software: ABAQUS; Gmsh; Matlab; COMSOL; FEniCS; deal.ii; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

CLEAN

Software Authors:   Plasmeijer, M.J.
Cited in: 55 Publications (1987–2016)
Related Software: Haskell; Miranda; Sparkle; Coq; ML; Isabelle/HOL; …
Main Fields: General and overarching topics; collections (00-XX); Mathematical logic and foundations (03-XX); Computer science (68-XX)

PRONTO3D

Software Authors:   Attaway, S.W.; Hendrickson, B.A.; Plimpton, S.J.; Gardner, D.R.; Vaughan, C.T.; Brown, K.H.; Heinstein, M.W.
Cited in: 55 Publications (1992–2022)
Related Software: DYNA3D; LS-DYNA; ABAQUS; FEAPpv; IMPETUS Afea; TREESPH; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Mechanics of particles and systems (70-XX)

ABINIT

Software Authors:   Xavier Gonze; et al.
Cited in: 49 Publications (2004–2022)
Related Software: Quantum Espresso; CASTEP; CheFSI; OCTOPUS; WIEN2k; NWChem; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

FronTier

Software Authors:   J. Du, B. Fix, J. Glimm, X. Jia, X. Li, Y. Li, L. Wu
Cited in: 54 Publications (2005–2022)
Related Software: FIVER; Gerris; OpenFOAM; CMPGRD; Ogen; Matlab; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

Adams

Software Authors:   MSC Software
Cited in: 52 Publications (2005–2022)
Related Software: Matlab; ANSYS; NASTRAN; SIMPACK; ABAQUS; Meschach; …
Main Fields: Computer science (68-XX); Mechanics of particles and systems (70-XX); Mechanics of deformable solids (74-XX)

Boltzmann

Software Authors:   Filbet, Francis; Russo, Giovanni
Cited in: 48 Publications (2003–2022)
Related Software: HE-E1GODF; CUDA; FINUFFT; SMILE; MPI; Kokkos; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

CAVEAT

Software Authors:   Addessio, F. L.; Carroll, D. E.; Dukowicz, J. K.; Harlow, F. H.; Johnson, J. N.; Kashiwa, B. A.; Maltrud, M. E.; Ruppel, H. M.
Cited in: 48 Publications (1987–2022)
Related Software: ReALE; DYNA3D; HE-E1GODF; DYNA2D; SLIC; LS-DYNA; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

Multisim

Software Authors:   National Instruments Corporation
Cited in: 47 Publications (2004–2022)
Related Software: Matlab; Fractional Order Chaotic Systems; CNN; DFOC; sysdfod
Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX); Mechanics of deformable solids (74-XX)

NWChem

Software Authors:   Kendall, Ricky A.; Aprà, Edoardo; Bernholdt, David E.; Bylaska, Eric J.; Dupuis, Michel; Fann, George I.; Harrison, Robert J.; Ju, Jialin; Nichols, Jeffrey A.; Nieplocha, Jarek; Straatsma, T.P.; Windus, Theresa L.; Wong, Adrian T.
Cited in: 42 Publications (2000–2023)
Related Software: GAUSSIAN; ABINIT; LAPACK; Quantum Espresso; GAMESS; ScaLAPACK; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Quantum theory (81-XX)

SOLA

Software Authors:   Hirt, C. W.; Nichols, B. D.; Romero, N. C.
Cited in: 47 Publications (1980–2023)
Related Software: SLIC; GENSMAC; SOLA-VOF; BCGSTAB; FDL3DI; GENSMAC3D; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

HSolver

Software Authors:   Stefan Ratschan; Zhikun She; Tomáš Dzetkulič
Cited in: 43 Publications (2005–2021)
Related Software: RSOLVER; Benchmarks; HyTech; PHAVer; SpaceEx; Sostools; …
Main Fields: Ordinary differential equations (34-XX); Numerical analysis (65-XX); Computer science (68-XX)

OVERFLOW

Software Authors:   Pieter G. Buning; NASA
Cited in: 45 Publications (1997–2022)
Related Software: Spalart-Allmaras; CMPGRD; CFL3D; Ogen; PEGASUS 5; OVERFLOW 2; …
Main Fields: General and overarching topics; collections (00-XX); Partial differential equations (35-XX); Numerical analysis (65-XX)

TrueTime

Software Authors:   Anton Cervin, Dan Henriksson, Bo Lincoln, Johan Eker, Karl-Erik Årzén
Cited in: 39 Publications (2005–2021)
Related Software: Matlab; Simulink; Torsche; Uppaal; AUTOSAR; SeDuMi; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Probability theory and stochastic processes (60-XX); Computer science (68-XX)

QuTiP

Software Authors:   J. R. Johansson, P. D. Nation, F. Nori
Cited in: 27 Publications (2015–2023)
Related Software: Python; NumPy; SciPy; WavePacket; GitHub; QEngine; …
Main Fields: Probability theory and stochastic processes (60-XX); Numerical analysis (65-XX); Computer science (68-XX)

DMC

Software Authors:   Medio, Alfredo; Lines, Marji
Cited in: 39 Publications (2001–2021)
Related Software: Dynamics; OpenCL; MPI; CUDA; PDCO; TropFishR; …
Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX); Difference and functional equations (39-XX)

MpCCI

Software Authors:   Fraunhofer Institut SCAI; W. Joppich, M. Kürschner
Cited in: 38 Publications (2002–2022)
Related Software: preCICE; OpenFOAM; DTK; COMSOL; ANSYS; Trilinos; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Mechanics of deformable solids (74-XX)

COPS

Software Authors:   Dolan ED, Moré JJ
Cited in: 37 Publications (2001–2022)
Related Software: AMPL; SNOPT; CUTEr; Ipopt; LANCELOT; SifDec; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX); Computer science (68-XX)

d/dt

Software Authors:   Asarin, Eugene; Dang, Thao; Maler, Oded
Cited in: 38 Publications (2002–2021)
Related Software: HyTech; PHAVer; SpaceEx; RSOLVER; Uppaal; HSolver; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

Flow*

Software Authors:   Xin Chen, Erika Ábrahám, Sriram Sankaranarayanan
Cited in: 36 Publications (2015–2022)
Related Software: SpaceEx; dReach; KeYmaera; HyTech; Breach; PHAVer; …
Main Fields: Mathematical logic and foundations (03-XX); Ordinary differential equations (34-XX); Numerical analysis (65-XX)

FIDAP

Software Authors:   Engelman, Michael S.
Cited in: 37 Publications (1982–2009)
Related Software: SPARSKIT; ITSOL; ILUS; ILUT; FLAC; ADINA; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

Palabos

Software Authors:   Lagrava, D.; Malaspinas, O.; Latt, J.; Chopard, B.; Latt, Jonas; et al.
Cited in: 32 Publications (2011–2022)
Related Software: OpenLB; waLBerla; Hemelb; LUDWIG; LB3D; MUPHY; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

PDB2PQR

Software Authors:   T. Dolinsky, J. Nielsen, A. McCammon, N. Baker
Cited in: 33 Publications (2006–2022)
Related Software: APBS; MIBPB; TABI; tabipb; CHARMM; PBEQ-Solver; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Optics, electromagnetic theory (78-XX)

Pluto

Software Authors:   Mignone, A.; Bodo, G.; Massaglia, S.; Matsakos, T.; Tesileanu, O.; Zanni, C.; Ferrari, A.
Cited in: 33 Publications (2007–2022)
Related Software: Athena; HLLE; RAMSES; NIRVANA; FLASH; ENZO; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

pySDC

Software Authors:   Ruprecht, Daniel; Speck, Robert
Cited in: 35 Publications (2015–2022)
Related Software: RODAS; PFASST; XBraid; PARAEXP; RIDC; Matplotlib; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

PILCO

Software Authors:   M. Deisenroth; C. Rasmussen
Cited in: 31 Publications (2014–2023)
Related Software: GPflow; GPyTorch; TensorFlow; Adam; OpenAI Gym; GitHub; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Statistics (62-XX); Computer science (68-XX)

NEST

Software Authors:   Gewaltig, MO; Diesmann, M.
Cited in: 19 Publications (2008–2021)
Related Software: NEURON; Pynn; Brian; Python; SpiNNaker; Scikit; …
Main Fields: Probability theory and stochastic processes (60-XX); Computer science (68-XX); Statistical mechanics, structure of matter (82-XX)

incompact3d

Software Authors:   Laizet, Sylvain; Li, Ning
Cited in: 31 Publications (2009–2022)
Related Software: 2DECOMP; Xcompact3d; FFTW; Spalart-Allmaras; Fluid flow phenomena; WInc3D; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

OpenLB

Software Authors:   Jonas Latt; Mathias J. Krause
Cited in: 29 Publications (2007–2022)
Related Software: Palabos; waLBerla; LB3D; Hemelb; p4est; Hemocell; …
Main Fields: Numerical analysis (65-XX); Fluid mechanics (76-XX); Classical thermodynamics, heat transfer (80-XX)

DL_POLY

Software Authors:   Smith, W.; Yong, C.W.; Rodger, P.M.
Cited in: 23 Publications (2000–2020)
Related Software: Gromacs; CHARMM; DL_POLY_3; AMBER; DL_MONTE; MDAnalysis; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Quantum theory (81-XX)

SINDy

Software Authors:   Loiseau, Jean-Christophe; Brunton, Steven L.
Cited in: 30 Publications (2017–2022)
Related Software: redbKIT; Nek5000; PDE-Net; VAMPnets; Adam; Loewner; …
Main Fields: Partial differential equations (35-XX); Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX)

SpiNNaker

Software Authors:   Furber, S., Galluppi, F., Temple, S., Plana, L. A.
Cited in: 16 Publications (2015–2021)
Related Software: NEURON; Pynn; NEST; Brian; AlexNet; ImageNet; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Computer science (68-XX)

STAR-CCM+

Software Authors:   CD-adapco; Pisaroni, M.; Sadi, R.; Lahaye, D.
Cited in: 28 Publications (2008–2022)
Related Software: OpenFOAM; FLUENT; COMSOL; PETSc; ANSYS; Trilinos; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

MATISSE

Software Authors:   Girard, Antoine; Pappas, George J.
Cited in: 30 Publications (2007–2022)
Related Software: HyTech; PHAVer; SpaceEx; Sostools; Matlab; d/dt; …
Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX); Computer science (68-XX)

MuJoCo

Software Authors:   E. Todorov, T. Erez, Y. Tassa
Cited in: 23 Publications (2016–2022)
Related Software: OpenAI Gym; TensorFlow; Adam; PyTorch; GitHub; Python; …
Main Fields: Computer science (68-XX); Mechanics of particles and systems (70-XX); Operations research, mathematical programming (90-XX)

DPIV

Software Authors:   Ma, X.; Karniadakis, G.E.; Park, H.; Gharib, M.
Cited in: 29 Publications (2003–2020)
Related Software: DPIV/T; Diffpack; DACE; Matlab; TFS; HomCont; …
Main Fields: Probability theory and stochastic processes (60-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

PINNsNTK

Software Authors:   Wang, Sifan; Yu, Xinling; Perdikaris, Paris
Cited in: 29 Publications (2021–2022)
Related Software: Adam; DiffSharp; TensorFlow; DeepXDE; DeepONet; XPINNs; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

TC-HAT

Software Authors:   Thota, P., Dankowicz, H.
Cited in: 29 Publications (2008–2022)
Related Software: SlideCont; COCO; AUTO; HomCont; MATCONT; DDE-BIFTOOL; …
Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX)

ART 3

Software Authors:   Gail A. Carpenter; Stephen Grossberg
Cited in: 16 Publications (1992–2012)
Related Software: Fuzzy ARTMAP; UCI-ml; LVQPAK; Matplotlib; SciPy; Matlab; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

KIVA-4

Software Authors:   Dr. Song-Charng Kong, Dr. Xiuling Wang, Dr. Darrell W. Pepper, Dr. Juan Heinrich
Cited in: 27 Publications (2006–2020)
Related Software: Kiva-2; CHEMKIN; OpenFOAM; FLUENT; METIS; Chem1D; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

CosmoTransitions

Software Authors:   C. L. Wainwright
Cited in: 25 Publications (2013–2022)
Related Software: AnyBubble; BubbleProfiler; HiggsSignals; HiggsBounds; SARAH; Vevacious; …
Main Fields: Probability theory and stochastic processes (60-XX); Quantum theory (81-XX); Statistical mechanics, structure of matter (82-XX)

CWENO

Software Authors:   Kleimann, Jens; Kopp, Andreas; Fichtner, Horst; Grauer, Rainer; Germaschewski,Kai
Cited in: 26 Publications (2004–2021)
Related Software: NIRVANA; FLASH; MAP; HE-E1GODF; CARMEN-MHD; GRADSPMHD; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

GNA

Software Authors:   Hidde de Jong, Johannes Geiselmann, Céline Hernandez, Michel Page
Cited in: 25 Publications (2006–2021)
Related Software: BIOCHAM; KEGG; Celldesigner; RoVerGeNe; DiVinE; Ginsim; …
Main Fields: Mathematical logic and foundations (03-XX); Ordinary differential equations (34-XX); Computer science (68-XX)

SIESTA

Software Authors:   Soler J.S., Artacho E., Gale J.D., Garcia A., Junquera J., Ordejon P., Sanchez-Portal D
Cited in: 23 Publications (2006–2023)
Related Software: ONETEP; OCTOPUS; ABINIT; CASTEP; Quantum Espresso; CONQUEST; …
Main Fields: Approximations and expansions (41-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

FELSOS

Software Authors:   Smolianski A
Cited in: 25 Publications (2005–2021)
Related Software: PROST; SLIC; Cimlib; FEATFLOW; Gmsh; Gerris; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

Fire Dynamics Simulator

Software Authors:   K. McGrattan, S. Hostikka, J. Floyd, H. Baum, R. Rehm
Cited in: 25 Publications (2005–2022)
Related Software: CFAST; FireFOAM; GitHub; HE-E1GODF; libWallModelledLES; DINOSOARS; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Fluid mechanics (76-XX)

PorePy

Software Authors:   E. Keilegavlen, A. Fumagalli, R. Berge, I. Stefansson, I. Berre
Cited in: 23 Publications (2018–2022)
Related Software: Gmsh; FEniCS; DuMuX; Matlab; UMFPACK; MRST; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

Turbulence Modeling

Software Authors:   Langley Research Center; Chris Rumsey; Brian Smith; George Huang
Cited in: 25 Publications (2012–2022)
Related Software: Spalart-Allmaras; Gmsh; FUN3D; OpenFOAM; ATLAS; GitHub; …
Main Fields: Partial differential equations (35-XX); Statistics (62-XX); Numerical analysis (65-XX)

iSNO-AAPair

Software Authors:   Xu Y, Shao XJ, Wu LY, Deng NY, Chou KC
Cited in: 24 Publications (2014–2019)
Related Software: iRSpot-PseDNC; iRNA-PseColl; Pse-in-One; iRSpot-EL; iSNO-PseAAC; pLoc-mAnimal; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

LOGOS

Software Authors:   Deryugin, Yu.N.; Zhuchkov, R.N.; Zelenskiy, D.K.; Kozelkov, A.S.; Sarazov, A.S.; Kudimov, N.F.; Lipnickiy, Yu.M.; Panasenko, A.V.; Safronov, A.V.
Cited in: 24 Publications (2014–2021)
Related Software: AUSM; LSODE; PETSc; SUNDIALS; RKC; SIMPLE; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

Open Dynamics Engine

Software Authors:   Russell Smith
Cited in: 16 Publications (2005–2022)
Related Software: Bullet; MuJoCo; GAZEBO; OptNet; CVXGEN; Dart; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Mechanics of deformable solids (74-XX)

OpenAD/F

Software Authors:   Utke, Jean; Naumann, Uwe; Fagan, Mike; Tallent, Nathan; Strout, Michelle Mills; Heimbach, Patrick; Hill, Chris; Wunsch, Carl
Cited in: 23 Publications (2007–2022)
Related Software: TAPENADE; ADIFOR; ADOL-C; revolve; ADIC; TAF; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Mechanics of deformable solids (74-XX)

OpenSim

Software Authors:   Delp, S.L., Anderson, F.C., Arnold, A.S., Loan, P., Habib, A., John, C.T., Guendelman, E., Thelen, D.G.
Cited in: 20 Publications (2009–2022)
Related Software: AnyBody; Python; Matlab; Simbody; MeshLab; OpenCap; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Mechanics of particles and systems (70-XX)

PERMIX

Software Authors:   Talebi, Hossein; Silani, Mohammad; Bordas, Stéphane P.A.; Kerfriden, Pierre; Rabczuk, Timon
Cited in: 24 Publications (2014–2022)
Related Software: XFEM; CutFEM; FEniCS; Matlab; ABAQUS; hypre; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

BacSim

Software Authors:   J. Kreft, G. Booth, J.W.T. Wimpenny
Cited in: 21 Publications (2000–2021)
Related Software: AgentCell; iDynoR; STOCHSIM; MatPack; FreeFem++; AceFEM; …
Main Fields: Partial differential equations (35-XX); Statistics (62-XX); Numerical analysis (65-XX)

Celldesigner

Software Authors:   Funahashi, A., Morohashi, M., Kitano, H., Tanimura, N.
Cited in: 17 Publications (2007–2019)
Related Software: KEGG; MetaCyc; BIOCHAM; Reactome; BioModels; COPASI; …
Main Fields: Ordinary differential equations (34-XX); Numerical analysis (65-XX); Computer science (68-XX)

D-Claw

Software Authors:   George, David L.; Iverson, Richard M.
Cited in: 22 Publications (2014–2023)
Related Software: GEOCLAW; PVM; CLAWPACK; chammp; HE-E1GODF; MPAS-Ocean; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

Dedalus

Software Authors:   Burns, K., Vasil, G., Oishi, J., Lecoanet, D., Brown, B., Quataert, E.
Cited in: 17 Publications (2018–2022)
Related Software: Chebfun; Julia; Matlab; ASCL; Python; Oceananigans.jl; …
Main Fields: Ordinary differential equations (34-XX); Partial differential equations (35-XX); Numerical analysis (65-XX)

FlowLab

Software Authors:   LaRoche, R.D.; Hutchings, B.J.; Muralikrishnan, R.
Cited in: 22 Publications (2008–2021)
Related Software: OpenFOAM; ParaView; GIMP; Gmsh; FLUENT; AVL; …
Main Fields: General and overarching topics; collections (00-XX); Partial differential equations (35-XX); Numerical analysis (65-XX)

VAMPnets

Software Authors:   Andreas Mardt, Luca Pasquali, Hao Wu, Frank Noé
Cited in: 22 Publications (2019–2022)
Related Software: PDE-Net; torchdiffeq; TensorFlow; SINDy; GAIO; PRMLT; …
Main Fields: Dynamical systems and ergodic theory (37-XX); Operator theory (47-XX); Numerical analysis (65-XX)

Entropy-SGD

Software Authors:   Pratik Chaudhari, Anna Choromanska, Stefano Soatto, Yann LeCun, Carlo Baldassi, Christian Borgs, Jennifer Chayes, Levent Sagun, Riccardo Zecchina
Cited in: 21 Publications (2018–2022)
Related Software: Adam; AlexNet; ImageNet; AdaGrad; GitHub; CIFAR; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

FIVER

Software Authors:   C.Farhat; J.-F.Gerbeau; A.Rallu
Cited in: 21 Publications (2012–2023)
Related Software: FronTier; ReALE; SLIC; TOP/DOMDEC; HLLE; Gerris; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

LIGGGHTS

Software Authors:   Kloss, C., Goniva, C.
Cited in: 20 Publications (2014–2022)
Related Software: OpenFOAM; CFDEMcoupling; Mathematica; LAMMPS; MFIX-DEM; STAR-CCM+; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

NAMD2

Software Authors:   Kale, Laxmikant; Skeel, Robert; Bhandarkar, Milind; Brunner, Robert; Gursoy, Attila; Krawetz, Neal; Phillips, James; Shinozaki, Aritomo; Varadarajan, Krishnan; Schulten, Klaus
Cited in: 17 Publications (1998–2016)
Related Software: CHARMM; Gromacs; VMD; NAMD; Globus Toolkit; AMBER; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Mechanics of deformable solids (74-XX)

StratiGraph

Software Authors:   Kågström, Bo; Johansson, Stefan; Johansson, Pedher
Cited in: 21 Publications (2000–2021)
Related Software: MCS Toolbox; STCSSP; JDQR; JDQZ; Eigtool; NLEVP; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Operator theory (47-XX); Numerical analysis (65-XX)