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Found 67 Software Packages (Results 1–67)

APBS

Software Authors:   Nathan Baker; J. Andrew McCammon; Michael Holst
Cited in: 91 Publications (2001–2022)
Related Software: MIBPB; CHARMM; TABI; PDB2PQR; PBEQ-Solver; SG; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Optics, electromagnetic theory (78-XX)

MIBPB

Software Authors:   Duan Chen; Zhan Chen; Changjun Chen; Weihua Geng; Guo-Wei Wei
Cited in: 57 Publications (2010–2022)
Related Software: APBS; TABI; PDB2PQR; CHARMM; PBEQ-Solver; TMSmesh; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

TABI

Software Authors:   Geng, Weihua; Krasny, Robert
Cited in: 32 Publications (2013–2021)
Related Software: APBS; MIBPB; PDB2PQR; TMSmesh; CHARMM; PBEQ-Solver; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

TMSmesh

Software Authors:   Chen M., Lu B.
Cited in: 21 Publications (2013–2020)
Related Software: APBS; MIBPB; TABI; TetGen; AFMPB; PHG; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

VORPAL

Software Authors:   Nieter, Chet; Cary, John R.
Cited in: 17 Publications (2004–2019)
Related Software: OSIRIS; QUICKPIC; OOPIC; H-VLPL; Pegasus; CRPropa; …
Main Fields: Numerical analysis (65-XX); Fluid mechanics (76-XX); Optics, electromagnetic theory (78-XX)

PBEQ-Solver

Software Authors:   S. Jo, M. Vargyas, J. Vasko-Szedlar, B. Roux, W. Im
Cited in: 14 Publications (2011–2022)
Related Software: APBS; MIBPB; CHARMM; PDB2PQR; TABI; DOLFIN; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

BETL

Software Authors:   R. Hiptmair, L. Kielhorn
Cited in: 13 Publications (2015–2021)
Related Software: Gmsh; ParaView; BEM++; HyENA; Python; AHMED; …
Main Fields: Partial differential equations (35-XX); Probability theory and stochastic processes (60-XX); Numerical analysis (65-XX)

SUGAR

Software Authors:   Clark, J. V., Bindel, D., Zhou, N., Bhave, S., Bai, Z., Demmel, J., Pister, K. S. J.
Cited in: 13 Publications (2002–2020)
Related Software: Omega3P; mctoolbox; ARPACK; benchmodred; JDQZ; JDQR; …
Main Fields: Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

ORB5

Software Authors:   Jolliet, S.; Bottino, A.; Angelino, P.; Hatzky, R.; Tran, T.; Mcmillan, B.; Sauter, O.; Appert, K.; Idomura, Y.; Villard, L.
Cited in: 12 Publications (2008–2019)
Related Software: GYSELA; gs2; MUMPS; XTOR; CHEASE; GENE; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

DelPhi

Software Authors:   Li, L.; Li, C.; Sarkar, S.; Zhang, J.; Witham, S.; Zhang, Z.; Wang, L.; Smith, N.; Petukh, M.; Alexov, E.
Cited in: 8 Publications (2013–2022)
Related Software: APBS; PDB2PQR; MIBPB; SG; DelPhiForce; NAMD; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

DelPhi Web Server

Software Authors:   Subhra Sarkar, Shawn Witham, Jie Zhang, Maxim Zhenirovskyy, Walter Rocchia, Emil Alexov
Cited in: 8 Publications (2013–2019)
Related Software: MIBPB; FEniCS; PDB2PQR; APBS; SDPBS; PBEQ-Solver; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

ProtoMol

Software Authors:   Matthey, Thierry; Cickovski, Trevor; Hampton, Scott; Ko, Alice; Ma, Qun; Nyerges, Matthew; Raeder, Troy; Slabach, Thomas; Izaguirre, Jesús A.
Cited in: 8 Publications (2003–2015)
Related Software: OOMPAA; GSHMC; NAMD2; Gromacs; MPI; BALL; …
Main Fields: Numerical analysis (65-XX); Fluid mechanics (76-XX); Quantum theory (81-XX)

transiesta

Software Authors:   Brandbyge, Mads; Mozos, J.L.; Ordejon, P.; Taylor, Jeremy Philip; Stokbro, Kurt
Cited in: 7 Publications (2008–2021)
Related Software: Kwant; NanoTCAD ViDES; SMEAGOL; nextnano; DDPy; NEMO5; …
Main Fields: Combinatorics (05-XX); Partial differential equations (35-XX); Numerical analysis (65-XX)

neBEM

Software Authors:   Mukhopadhyay, Supratik; Majumdar, Nayana
Cited in: 7 Publications (2009–2019)
Related Software: SERBA
Main Fields: Potential theory (31-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

PIC-MCC

Software Authors:   Chanrion, O.; Neubert, T.
Cited in: 7 Publications (2008–2014)
Related Software: Bolsig; KDTREE; Plasimo; OOPIC; VORPAL; LAPACK
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

SDPBS

Software Authors:   Jiang, Yi; Xie, Yang; Ying, Jinyong; Xie, Dexuan; Yu, Zeyun
Cited in: 7 Publications (2015–2019)
Related Software: MIBPB; DelPhi Web Server; AFMPB; FEniCS; PDB2PQR; APBS; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

COEFANG1

Software Authors:   Lima, P.M.
Cited in: 6 Publications (1991–2007)
Related Software: NJGRAF; NEWGRAPH; NJFORMULA; RACAH; NJSUMPAR; NJSUMMATION; …
Main Fields: Nonassociative rings and algebras (17-XX); Numerical analysis (65-XX); Computer science (68-XX)

FEMM

Software Authors:   David Meeker
Cited in: 5 Publications (2011–2021)
Related Software: FEniCS; SciPy; Finite Element Method Magnetics; Magpylib; Matplotlib; NumPy; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX); Optics, electromagnetic theory (78-XX)

PAFMPB

Software Authors:   Zhang, Bo; Peng, Bo; Huang, Jingfang; Pitsianis, Nikos P.; Sun, Xiaobai; Lu, Benzhuo
Cited in: 6 Publications (2015–2019)
Related Software: TMSmesh; AFMPB; APBS; VCMM; DASHMM; TABI; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

ToSCA

Software Authors:   Albinus, Günter; H. Gajewski
Cited in: 6 Publications (1993–2007)
Related Software: NASTRAN; ABAQUS; I-DEAS; PERMAS; ANSYS; OOPIC; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

CPIC

Software Authors:   G. L. Delzanno, E. Camporeale, J. D. Moulton, J. E. Borovsky, E. A. MacDonald, M. F. Thomsen
Cited in: 5 Publications (2013–2021)
Related Software: DEMOCRITUS; DRACO; PicUp3D; pdFOAM; MONACO; dsmcFoam; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

Moldy

Software Authors:   K. Refson
Cited in: 5 Publications (2000–2010)
Related Software: LPMD; DL_POLY_3
Main Fields: Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX); Quantum theory (81-XX)

ScaFaCoS

Software Authors:   M. Hofmann; G. Rünger
Cited in: 5 Publications (2013–2019)
Related Software: PNFFT; NFFT3; PFFT; P3M3DP; ESPResSo; MMM1D; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Optics, electromagnetic theory (78-XX)

SCELib

Software Authors:   N. Sanna, F.A. Gianturco
Cited in: 4 Publications (2000–2009)
Related Software: GAUSSIAN; VOLSCAT; SCELib3.0; pthreads
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Quantum theory (81-XX)

UPIC

Software Authors:   UCLA; Decyk V. K.
Cited in: 3 Publications (2013–2016)
Related Software: QUICKPIC; OSIRIS; Oracle; VORPAL; PIConGPU
Main Fields: Numerical analysis (65-XX); Fluid mechanics (76-XX); Optics, electromagnetic theory (78-XX)

Apbsmem

Software Authors:   Callenberg, K.M.; Choudhary, O.P.; de Forest, G.L.; Gohara, D.W.; Baker, N.A.; Grabe, M.
Cited in: 4 Publications (2013–2018)
Related Software: MIBPB; APBS; TABI; TMSmesh; CHARMM; FFTSVD; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Optics, electromagnetic theory (78-XX)

ELMFIRE

Software Authors:   J. A. Heikkinen; S. Henriksson; S. Janhunen; T. P. Kiviniemi; F. Ogando
Cited in: 4 Publications (2008–2018)
Related Software: GYSELA; FPPAC; NITSOL; hypre; GENE; MPI; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

ESES

Software Authors:   Zhao, Rundong; Wang, Menglun; Tong, Yiying; Wei, Guo-Wei
Cited in: 4 Publications (2018–2021)
Related Software: PDB2PQR; APBS; Apbsmem; TABI; TMSmesh; MIBPB; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

MMM2D

Software Authors:   A.Arnold, C.Holm
Cited in: 3 Publications (2013–2015)
Related Software: ESPResSo; Gromacs; NAMD; MMM1D; NFFT3; ScaFaCoS; …
Main Fields: Numerical analysis (65-XX); Fluid mechanics (76-XX); Optics, electromagnetic theory (78-XX)

MOLDEN

Software Authors:   G.Schaftenaar, J.H. Noordik
Cited in: 2 Publications (2006–2016)
Related Software:
Main Fields: Statistical mechanics, structure of matter (82-XX); Biology and other natural sciences (92-XX)

PTRACK

Software Authors:   Xu, J.; Ostroumov, P.N.; Nolen, J.
Cited in: 4 Publications (2008–2018)
Related Software:
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Optics, electromagnetic theory (78-XX)

AQUASOL

Software Authors:   P. Koehl, M. Delarue
Cited in: 3 Publications (2015–2017)
Related Software: SDPBS; Python; AFMPB; MIBPB; PDB2PQR; DOLFIN; …
Main Fields: Numerical analysis (65-XX); Optics, electromagnetic theory (78-XX); Quantum theory (81-XX)

Atomistix ToolKit

Software Authors:   QuantumWise
Cited in: 2 Publications (2016–2017)
Related Software: LAPACK; TREMOLO-X; Python; ATK-Classical; Pselinv; GitHub; …
Main Fields: Numerical analysis (65-XX); Quantum theory (81-XX)

DelPhiPKa

Software Authors:   Wang, L.; Zhang, M.; Alexov, E.
Cited in: 3 Publications (2019–2022)
Related Software: MIBPB; DelPhi; DelPhiForce; TMSmesh; APBS
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)

EMPIRE-PIC

Software Authors:   Bettencourt, Matthew T.; Brown, Dominic A. S.; Cartwright, Keith L.; Cyr, Eric C.; Glusa, Christian A.; Lin, Paul T.; Moore, Stan G.; Mcgregor, Duncan A. O.; Pawlowski, Roger P.; Phillips, Edward G.; Roberts, Nathan V.; Wright, Steven A.; Maheswaran, Satheesh; Jones, John P.; Jarvis, Stephen A.
Cited in: 3 Publications (2021–2022)
Related Software: Kokkos; RODAS; bootlib; SPIS; SYCL; Cabana; …
Main Fields: Partial differential equations (35-XX); Statistics (62-XX); Numerical analysis (65-XX)

MacMolPlt

Software Authors:   Brett Bode, Chris Johnson, Song Li, Steven Schulteis
Cited in: 2 Publications (2000–2021)
Related Software: GAMESS; ASE; WebMO; MOLDEN; CCLIB; NumPy; …
Main Fields: Computer science (68-XX); Statistical mechanics, structure of matter (82-XX)

PDB_Hydro

Software Authors:   Azuara C, Lindahl E, Koehl P, Orland H, Delarue M
Cited in: 2 Publications (2010–2011)
Related Software: MIBPB; ISIM
Main Fields: Partial differential equations (35-XX); Differential geometry (53-XX); Biology and other natural sciences (92-XX)

SPICES1

Software Authors:   V. Riccardo, G.G.M. Coppa, G. Lapenta
Cited in: 3 Publications (1998–2015)
Related Software: Vador
Main Fields: Numerical analysis (65-XX); Fluid mechanics (76-XX); Quantum theory (81-XX)

DelPhiForce

Software Authors:   Li L, Jia Z, Peng Y, Chakravorty A, Sun L, Alexov E.
Cited in: 2 Publications (2019–2021)
Related Software: DelPhi; DelPhiPKa; VMD; PDB2PQR; Chimera; NAMD
Main Fields: Biology and other natural sciences (92-XX)

hieLPS

Software Authors:   Ma, Zu-Hui; Chew, Weng Cho; Wu, Yu Mao; Jiang, Li Jun
Cited in: 2 Publications (2015–2020)
Related Software:
Main Fields: Partial differential equations (35-XX); Optics, electromagnetic theory (78-XX)

Macrodox

Software Authors:   Dr. Scott H. Northrup, Dr. Katheryn A. Thomasson, George P. Stevenson, Theo L. Laughner, Andy Boswell, Kiran Mukhyala, Dr. Stephen L. Lowe, Dr. Victor F. Waingeh, Neville Forlemu
Cited in: 2 Publications (2007–2010)
Related Software: VMD; SDA; UHBD; Browndye; OCaml; APBS; …
Main Fields: Biology and other natural sciences (92-XX)

MDSimAid

Software Authors:   Crocker, M.; Hampton, S.; Matthey, T.; Izaguirre, J.
Cited in: 1 Publication (2011)
Related Software: Gromacs; FFTW; NAMD; AMBER; Matlab
Main Fields: Numerical analysis (65-XX); Optics, electromagnetic theory (78-XX)

MDVRY

Software Authors:   M. Souaille, H. Loirat, D. Borgis, M.P. Gaigeot
Cited in: 2 Publications (2009–2013)
Related Software: MCMC2; GROMOS
Main Fields: Numerical analysis (65-XX); Fluid mechanics (76-XX); Optics, electromagnetic theory (78-XX)

MMM1D

Software Authors:   A.Arnold, C.Holm
Cited in: 2 Publications (2015–2017)
Related Software: Spectral Ewald; MMM2D; NFFT3; ScaFaCoS; PNFFT; PFFT
Main Fields: Numerical analysis (65-XX); Optics, electromagnetic theory (78-XX)

pdFOAM

Software Authors:   Capon, C. J.; Brown, M.; White, C.; Scanlon, T.; Boyce, R. R.
Cited in: 2 Publications (2017–2018)
Related Software: DRACO; PicUp3D; MONACO; DEMOCRITUS; CPIC; dsmcFoam; …
Main Fields: Numerical analysis (65-XX); Fluid mechanics (76-XX); Astronomy and astrophysics (85-XX)

stella

Software Authors:   Barnes, M.; Parra, F. I.; Landreman, M.
Cited in: 2 Publications (2019–2020)
Related Software: gs2; GitHub; PETSc; ORB5; GKW; AstroGK
Main Fields: Fluid mechanics (76-XX); Optics, electromagnetic theory (78-XX); Statistical mechanics, structure of matter (82-XX)

BEMLAP

Software Authors:   Kirkup, Stephen
Cited in: 1 Publication (2007)
Related Software:
Main Fields: Optics, electromagnetic theory (78-XX)

ChemShell

Software Authors:   S. Metz, J. Kästner, A. Sokol, T. Keal, P. Sherwood
Cited in: 1 Publication (2017)
Related Software: DL-FIND
Main Fields: Numerical analysis (65-XX); Mechanics of particles and systems (70-XX); Quantum theory (81-XX)

COILCHECK

Software Authors:   Alva V, Syamala Devi DP, Sowdhamini R.
Cited in: 1 Publication (2012)
Related Software: PharmGKB; StSNP; SNPeffect; DrugscorePPI; SNPs3D; FoldX; …
Main Fields: Biology and other natural sciences (92-XX)

DAFMPB

Software Authors:   Zhang, Bo; Debuhr, Jackson; Niedzielski, Drake; Mayolo, Silvio; Lu, Benzhuo; Sterling, Thomas
Cited in: 1 Publication (2019)
Related Software:
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

DAMQT

Software Authors:   Rafael López, Jaime Fernández Rico, Guillermo Ramírez, Ignacio Ema, David Zorrilla
Cited in: 1 Publication (2017)
Related Software: SMILES; XD2015; AIMAll; ADF; TURBOMOLE
Main Fields: Biology and other natural sciences (92-XX)

DelEnsembleElec

Software Authors:   Votapka, Lane W.; Czapla, Luke; Zhenirovskyy, Maxim; Amaro, Rommie E.
Cited in: 1 Publication (2013)
Related Software: VMD; DelPhi Web Server; PDB2PQR; CHARMM; AMBER
Main Fields: Biology and other natural sciences (92-XX)

DPCM

Software Authors:   Breden, Maxime; Chainais-Hillairet, Claire; Zurek, Antoine
Cited in: 1 Publication (2021)
Related Software: GitHub; galepu; INTLAB
Main Fields: Partial differential equations (35-XX); Operator theory (47-XX); Numerical analysis (65-XX)

DropBot

Software Authors:   Fobel, R., Fobel, C., Wheeler, A.R.
Cited in: 1 Publication (2013)
Related Software: JavaScript; CUDA
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

elsepa

Software Authors:   Francesc Salvat, Aleksander Jablonski, Cedric J. Powell
Cited in: 1 Publication (2019)
Related Software: RADWEQ
Main Fields: Numerical analysis (65-XX); Geophysics (86-XX)

FLUTE

Software Authors:   Sotnikov, V.I., Ivanov, V.V., Presura, R., Leboeuf, J.N., Onishchenko, O.G., Oliver, B.V., Jones, B., Mehlhorn, T.A., Deeney, C.
Cited in: 1 Publication (2008)
Related Software:
Main Fields: Fluid mechanics (76-XX)

LPMD

Software Authors:   Davis, Sergio; Loyola, Claudia; Gonz'alez, Felipe; Peralta, Joaqu{'i}n
Cited in: 1 Publication (2010)
Related Software: DL_POLY_3; Moldy
Main Fields: Quantum theory (81-XX); Statistical mechanics, structure of matter (82-XX)

MacroDensity

Software Authors:   Keith T. Butler, Christopher H. Hendon, Aron Walsh
Cited in: 0 Publications
Related Software: BAPT; ASE; pymatgen; AiiDA; FireWorks; surfaxe; …
Main Fields:

MCMC2

Software Authors:   Bonhommeau, David A.; Gaigeot, Marie-Pierre
Cited in: 1 Publication (2013)
Related Software: MDVRY
Main Fields: Numerical analysis (65-XX); Fluid mechanics (76-XX); Optics, electromagnetic theory (78-XX)

MDMC2

Software Authors:   Bonhommeau, David A.; Gaigeot, Marie-Pierre
Cited in: 1 Publication (2014)
Related Software:
Main Fields: Numerical analysis (65-XX); Statistical mechanics, structure of matter (82-XX)

MOSCITO

Software Authors:   Paschek, D.
Cited in: 1 Publication (2000)
Related Software:
Main Fields: Biology and other natural sciences (92-XX)

MPBEC

Software Authors:   S. Vergara-Perez; M. Marucho
Cited in: 1 Publication (2021)
Related Software: APBS
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Optics, electromagnetic theory (78-XX)

PICLas

Software Authors:   P. Ortwein, S. Copplestone, C.-D. Munz, T. Binder, A. Mirza, P. Nizenkov, M. Pfeiffer, W. Reschke, S. Fasoulas
Cited in: 1 Publication (2021)
Related Software: Spalart-Allmaras; HOPR; FLEXI; XFOIL; PyFR; HDF5; …
Main Fields: Fluid mechanics (76-XX)

PIFE-PIC

Software Authors:   Han, Daoru; He, Xiaoming; Lund, David; Zhang, Xu
Cited in: 1 Publication (2021)
Related Software: IFE-PIC
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Optics, electromagnetic theory (78-XX)

TensorMol

Software Authors:   Kun Yao; et al.
Cited in: 0 Publications
Related Software: LAMMPS; PhysNet; PyTorch; REANN
Main Fields:

DensToolKit

Software Authors:   Solano-Altamirano, J.M., Julio M. Hernández-Pérez
Cited in: 0 Publications
Related Software:
Main Fields:

VALTOPO

Software Authors:   R. Bianchi, A. Forni
Cited in: 0 Publications
Related Software:
Main Fields: