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Found 46 Software Packages (Results 1–46)

Surveillance

Cited in 25 Documents (2005–2022)
Software Authors: Michael Höhle, Sebastian Meyer, Michaela Paul, Andrea Riebler, S. Steiner, M. Virtanen, Valentin Wimmer, T. Correa, M. Hofmann, C. Lang
Related Software: R; SurvStat@RKI; maptools; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX); …

EpiEstim

Cited in 27 Documents (2014–2023)
Software Authors: Anne Cori
Related Software: R; GitHub; R0; …
Main Fields: Ordinary differential equations (34-XX); Statistics (62-XX); Numerical analysis (65-XX); …

Be-CoDiS

Cited in 23 Documents (2015–2023)
Software Authors: Ivorra, Benjamin; Ngom, Diène; Ramos, Ángel M.
Related Software: Matlab; GitHub; iOverbook; …
Main Fields: Ordinary differential equations (34-XX); Partial differential equations (35-XX); Calculus of variations and optimal control; optimization (49-XX); …

EpiModel

Cited in 8 Documents (2020–2022)
Software Authors: Samuel Jenness, Steven M. Goodreau, Martina Morris, Emily Beylerian, Skye Bender-deMoll, Kevis Weiss
Related Software: R; Python; SciPy; …
Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX); Probability theory and stochastic processes (60-XX); …

Autograph

Cited in 4 Documents (2010–2018)
Software Authors: Kim, H.A., Karp, B.
Related Software: Polygraph; Snort; Hamsa; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX); Information and communication theory, circuits (94-XX)

epinet

Cited in 10 Documents (2011–2022)
Software Authors: Chris Groendyke, David Welch, David Hunter
Related Software: R; ergm; Surveillance; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Numerical analysis (65-XX); …

epiABC

Cited in 11 Documents (2017–2021)
Software Authors: Kypraios, Theodore; Neal, Peter; Prangle, Dennis
Related Software: R; abc; BayesDA; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX); …

FluTE

Cited in 11 Documents (2013–2022)
Software Authors: Chao, D. L.; Halloran, M. E.; Obenchain, V. J.; Longini Jr, I. M.
Related Software: Covasim; emdbook; DEDiscover; …
Main Fields: Dynamical systems and ergodic theory (37-XX); Statistics (62-XX); Computer science (68-XX); …

COVID-ABS

Cited in 8 Documents (2020–2022)
Software Authors: Silva, Petrônio C. L.; Batista, Paulo V. C.; Lima, Hélder S.; Alves, Marcos A.; Guimarães, Frederico G.; Silva, Rodrigo C. P.
Related Software: Covasim; fpp2; usmap; …
Main Fields: Ordinary differential equations (34-XX); Probability theory and stochastic processes (60-XX); Statistical mechanics, structure of matter (82-XX); …

R0

Cited in 5 Documents (2019–2021)
Software Authors: Obadia T, Haneef R, Boelle PY
Related Software: EpiEstim; Surveillance; R; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

gleamviz

Cited in 7 Documents (2013–2023)
Software Authors: Van den Broeck, W., Gioannini, C., Goncalves, B., Quaggiotto, M., Colizza, V., Vespignani, A
Related Software: plfit; GEMFsim; SNAP; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX); …

FRED

Cited in 5 Documents (2015–2020)
Software Authors: Grefenstette, J.J., Brown, S.T., Rosenfeld, R., DePasse, J., Stone, N.T., Cooley, P.C., Wheaton, W.D., Fyshe, A., Galloway, D.D., Sriram, A., et al.
Related Software: R; GitHub; GEMFsim; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX); …

PALOMA

Cited in 4 Documents (2016–2020)
Software Authors: Cheng Feng, Jane Hillston
Related Software: SCEL; CARMA; Bio-PEPA; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Biology and other natural sciences (92-XX); …

RladyBug

Cited in 4 Documents (2007–2014)
Software Authors: Michael Hoehle, Ulrike Feldmann, Sebastian Meyer
Related Software: R; amei; CODA; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

amei

Cited in 0 Documents
Software Authors: Daniel Merl, Leah R. Johnson, Robert B. Gramacy, Marc S. Mangel
Related Software: R; R0; Surveillance; …
Main Fields:

GEMFsim

Cited in 3 Documents (2018–2021)
Software Authors: Faryad Darabi Sahneh, Aram Vajdi, Heman Shakeri, Futing Fan, Caterina Scoglio
Related Software: SNAP; EpiModel; FRED; …
Main Fields: Combinatorics (05-XX); Probability theory and stochastic processes (60-XX); Operations research, mathematical programming (90-XX); …

UNAIDS

Cited in 4 Documents (2009–2016)
Software Authors: Ghys PD, Brown T, Grassly NC, Garnett G, Stanecki KA, Stover J, Walker N.
Related Software: WinBUGS; bayesTFR; bayesLife; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX); …

COVID-CAPS

Cited in 0 Documents
Software Authors: Parnian Afshar, Shahin Heidarian, Farnoosh Naderkhani, Anastasia Oikonomou, Konstantinos N. Plataniotis, Arash Mohammadi
Related Software: CovXNet; COVID-Net; GitHub; …
Main Fields:

EpiILM

Cited in 0 Documents
Software Authors: Vineetha Warriyar. K. V.; Rob Deardon
Related Software: EpiILMCT; epinet; R; …
Main Fields:

EpiILMCT

Cited in 0 Documents
Software Authors: Waleed Almutiry, Rob Deardon, Vineetha Warriyar K. V.
Related Software: EpiILM; epinet; R; …
Main Fields:

EpiSIX

Cited in 3 Documents (2020–2022)
Software Authors: Huang, Senzhong; Peng, Zhihang; Jin, Zhen
Related Software: RobinX; SPOT; pgRouting; …
Main Fields: Operations research, mathematical programming (90-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX); Biology and other natural sciences (92-XX)

EpiStruct

Cited in 3 Documents (2019–2021)
Software Authors: Black, Andrew J.
Related Software: GitHub; epiABC; RcppArmadillo; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

libspatialSEIR

Cited in 3 Documents (2016–2021)
Software Authors: Brown , G. D.
Related Software: GitHub; R; deBInfer; …
Main Fields: Ordinary differential equations (34-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

PhyloGeoTool

Cited in 3 Documents (2002–2022)
Software Authors: Libin, P., et al.
Related Software: DEPP; INSTRAL; UShER; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

SSF.App.Worm

Cited in 1 Document (2008)
Software Authors: Liljenstam M.
Related Software: JADE; ipc; PEPA; …
Main Fields: Computer science (68-XX)

epydemic

Cited in 0 Documents
Software Authors: Simon Dobson
Related Software: EoN; SciPy; EpiModel; …
Main Fields:

ETAS

Cited in 0 Documents
Software Authors: Abdollah Jalilian, Jiancang Zhuang
Related Software: etasFLP; R; etas8p; …
Main Fields:

etas_solve

Cited in 1 Document (2018)
Software Authors: Kasahara, A., Yagi, Y., Enescu, B.
Related Software: PtProcess; spatstat; etas8p; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX)

Pathogen.jl

Cited in 0 Documents
Software Authors: Justin Angevaare, Zeny Feng, Rob Deardon
Related Software: Julia; FractionalDiffEq.jl; FdeSolver; …
Main Fields:

WBR-2019

Cited in 2 Documents (2019–2022)
Software Authors: Walker, James N.; Black, Andrew J.; Ross, Joshua V.
Related Software: BayesDA; MLMCandMultifidelityForABC; AABC; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX); …

arcospy

Cited in 0 Documents
Software Authors: Steven Rich, Andrew Ba Tran, Aaron Williams, Jason Holt, Jeffery Sauer, Taylor M. Oshan
Related Software: urltools; Python; R; …
Main Fields:

asymptor

Cited in 1 Document (2020)
Software Authors: Hugo Gruson
Related Software: EstimateS
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

comomodels

Cited in 1 Document (2022)
Software Authors: van der Vegt, Solveig A.; Dai, Liangti; Bouros, Ioana; Farm, Hui Jia; Creswell, Richard; Dimdore-Miles, Oscar; Cazimoglu, Idil; Bajaj, Sumali; Hopkins, Lyle; Seiferth, David; Cooper, Fergus; Lei, Chon Lok; Gavaghan, David; Lambert, Ben
Related Software: Plotly; R Markdown; ggplot2; …
Main Fields: Biology and other natural sciences (92-XX)

DataFlasks

Cited in 1 Document (2020)
Software Authors: Francisco Maia, Miguel Matos, Ricardo Vilaça, José Pereira, Rui Oliveira, Etienne Rivière
Related Software: PeerSim; Coq; TLA; …
Main Fields: Computer science (68-XX)

dynamic_survival_analysis

Cited in 1 Document (2023)
Software Authors: KhudaBukhsh, Wasiur R.; Bastian, Caleb Deen; Wascher, Matthew; Klaus, Colin; Sahai, Saumya Yashmohini; Weir, Mark H.; Kenah, Eben; Root, Elisabeth; Tien, Joseph H.; Rempała, Grzegorz A.
Related Software: Python; GitHub
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

Eir

Cited in 0 Documents
Software Authors: Mathew Jacob
Related Software: EpiModel; EoN; Python
Main Fields:

EpidemiOptim

Cited in 0 Documents
Software Authors: Colas, Cédric; Hejblum, Boris; Rouillon, Sebastien; Thiébaut, Rodolphe; Oudeyer, Pierre-Yves; Moulin-Frier, Clément; Prague, Mélanie
Related Software: OpenAI Gym; torchdiffeq; Agent57
Main Fields: Computer science (68-XX)

EpiFire

Cited in 1 Document (2020)
Software Authors: Hladish, T.; Melamud, E.; Barrera, L. A.; Galvani, A.; Meyers, L. A.
Related Software: FluTE; ANTIGONE; SNOPT; …
Main Fields: Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

epiPOMS

Cited in 1 Document (2020)
Software Authors: Touloupou, P.; Spencer, S. E. F.
Related Software: epiABC; R
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

INDEMICS

Cited in 1 Document (2014)
Software Authors: Bisset, Keith R.; Chen, Jiangzhuo; Deodhar, Suruchi; Feng, Xizhou; Ma, Yifei; Marathe, Madhav V.
Related Software: EpiSimdemics; FluTE
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

InterSpread Plus

Cited in 0 Documents
Software Authors: Stevenson MA, Sanson RL, Stern MW, O’Leary BD, Sujau M, Moles-Benfell N, Morris RS
Related Software: reshape; Python; igraph; …
Main Fields:

PandemicLP

Cited in 1 Document (2022)
Software Authors: CovidLP team
Related Software: CovidLP; shiny; R
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

PATH 4.0

Cited in 1 Document (2021)
Software Authors: Singh, Sonza; France, Anne Marie; Chen, Yao-Hsuan; Farnham, Paul G.; Oster, Alexandra M.; Gopalappa, Chaitra
Related Software: HIV-TRACE; NetLogo
Main Fields: Biology and other natural sciences (92-XX)

SIMID

Cited in 1 Document (2016)
Software Authors: Lilia L. Ramírez-Ramírez, Yulia R. Gel, Mary Thompson, Eileen de Villa, Matt McPherson
Related Software:
Main Fields: Combinatorics (05-XX); Statistics (62-XX)

stochasticGEM

Cited in 0 Documents
Software Authors: Eugene Zwane
Related Software: epicalc; RladyBug; Epi; …
Main Fields:

bayesianETAS

Cited in 0 Documents
Software Authors: Gordon J. Ross
Related Software:
Main Fields:

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