Surveillance Software Authors: Michael Höhle, Sebastian Meyer, Michaela Paul, Andrea Riebler, S. Steiner, M. Virtanen, Valentin Wimmer, T. Correa, M. Hofmann, C. Lang Cited in: 25 Publications (2005–2022) Related Software: R; SurvStat@RKI; maptools; GMRFLib; EpiEstim; epinet; … Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)
EpiEstim Software Authors: Anne Cori Cited in: 27 Publications (2014–2023) Related Software: R; GitHub; R0; Surveillance; epinet; tscount; … Main Fields: Ordinary differential equations (34-XX); Statistics (62-XX); Numerical analysis (65-XX)
Be-CoDiS Software Authors: Ivorra, Benjamin; Ngom, Diène; Ramos, Ángel M. Cited in: 22 Publications (2015–2022) Related Software: Matlab; iOverbook; TopoChemie-2020; GitHub; pomp Main Fields: Ordinary differential equations (34-XX); Partial differential equations (35-XX); Statistics (62-XX)
Autograph Software Authors: Kim, H.A., Karp, B. Cited in: 4 Publications (2010–2018) Related Software: Polygraph; Snort; Hamsa; BLINC; Panorama; KEA; … Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX); Information and communication theory, circuits (94-XX)
EpiModel Software Authors: Samuel Jenness, Steven M. Goodreau, Martina Morris, Emily Beylerian, Skye Bender-deMoll, Kevis Weiss Cited in: 7 Publications (2020–2022) Related Software: R; Python; SciPy; EoN; Surveillance; epinet; … Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX); Probability theory and stochastic processes (60-XX)
epinet Software Authors: Chris Groendyke, David Welch, David Hunter Cited in: 10 Publications (2011–2022) Related Software: R; ergm; Surveillance; EpiEstim; EpiModel; EpiILMCT; … Main Fields: Combinatorics (05-XX); Statistics (62-XX); Numerical analysis (65-XX)
epiABC Software Authors: Kypraios, Theodore; Neal, Peter; Prangle, Dennis Cited in: 11 Publications (2017–2021) Related Software: R; abc; BayesDA; GitHub; abctools; GPS-ABC; … Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)
FluTE Software Authors: Chao, D. L.; Halloran, M. E.; Obenchain, V. J.; Longini Jr, I. M. Cited in: 11 Publications (2013–2022) Related Software: Covasim; emdbook; DEDiscover; EpiFire; ANTIGONE; SNOPT; … Main Fields: Dynamical systems and ergodic theory (37-XX); Statistics (62-XX); Computer science (68-XX)
COVID-ABS Software Authors: Silva, Petrônio C. L.; Batista, Paulo V. C.; Lima, Hélder S.; Alves, Marcos A.; Guimarães, Frederico G.; Silva, Rodrigo C. P. Cited in: 8 Publications (2020–2022) Related Software: Covasim; fpp2; usmap; GNAR; rapidminer; ggplot2; … Main Fields: Ordinary differential equations (34-XX); Probability theory and stochastic processes (60-XX); Statistical mechanics, structure of matter (82-XX)
R0 Software Authors: Obadia T, Haneef R, Boelle PY Cited in: 5 Publications (2019–2021) Related Software: EpiEstim; Surveillance; R; EpiModel; tscount; epinet; … Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)
gleamviz Software Authors: Van den Broeck, W., Gioannini, C., Goncalves, B., Quaggiotto, M., Colizza, V., Vespignani, A Cited in: 7 Publications (2013–2023) Related Software: plfit; GEMFsim; SNAP; EpiModel; FRED; Epigrass; … Main Fields: Combinatorics (05-XX); Computer science (68-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)
FRED Software Authors: Grefenstette, J.J., Brown, S.T., Rosenfeld, R., DePasse, J., Stone, N.T., Cooley, P.C., Wheaton, W.D., Fyshe, A., Galloway, D.D., Sriram, A., et al. Cited in: 6 Publications (2015–2021) Related Software: R; GitHub; GEMFsim; SNAP; EpiModel; Epigrass; … Main Fields: Statistics (62-XX); Computer science (68-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)
PALOMA Software Authors: Cheng Feng, Jane Hillston Cited in: 4 Publications (2016–2020) Related Software: SCEL; CARMA; Bio-PEPA; Ntccrt; PEPA; PALOMA; … Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
RladyBug Software Authors: Michael Hoehle, Ulrike Feldmann, Sebastian Meyer Cited in: 4 Publications (2007–2014) Related Software: R; amei; CODA; Cobra; Stan; R0; … Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)
amei Software Authors: Daniel Merl, Leah R. Johnson, Robert B. Gramacy, Marc S. Mangel Cited in: 0 Publications Related Software: R; R0; Surveillance; tscount; EpiModel; RladyBug; … Main Fields: –
GEMFsim Software Authors: Faryad Darabi Sahneh, Aram Vajdi, Heman Shakeri, Futing Fan, Caterina Scoglio Cited in: 3 Publications (2018–2021) Related Software: SNAP; EpiModel; FRED; Epigrass; gleamviz; NDlib; … Main Fields: Probability theory and stochastic processes (60-XX); Statistical mechanics, structure of matter (82-XX); Operations research, mathematical programming (90-XX)
UNAIDS Software Authors: Ghys PD, Brown T, Grassly NC, Garnett G, Stanecki KA, Stover J, Walker N. Cited in: 4 Publications (2009–2016) Related Software: WinBUGS; bayesTFR; bayesLife; bayesPop; bayesDem; mcmc; … Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)
COVID-CAPS Software Authors: Parnian Afshar, Shahin Heidarian, Farnoosh Naderkhani, Anastasia Oikonomou, Konstantinos N. Plataniotis, Arash Mohammadi Cited in: 0 Publications Related Software: CovXNet; COVID-Net; GitHub; Xception; AlexNet; Grad-CAM; … Main Fields: –
EpiILM Software Authors: Vineetha Warriyar. K. V.; Rob Deardon Cited in: 0 Publications Related Software: EpiILMCT; epinet; R; hergm; ergm; igraph; … Main Fields: –
EpiILMCT Software Authors: Waleed Almutiry, Rob Deardon, Vineetha Warriyar K. V. Cited in: 0 Publications Related Software: EpiILM; epinet; R; hergm; ergm; igraph; … Main Fields: –
EpiSIX Software Authors: Huang, Senzhong; Peng, Zhihang; Jin, Zhen Cited in: 3 Publications (2020–2022) Related Software: RobinX; SPOT; pgRouting; UniCorT; json2run; CPLEX Main Fields: Operations research, mathematical programming (90-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX); Biology and other natural sciences (92-XX)
EpiStruct Software Authors: Black, Andrew J. Cited in: 3 Publications (2019–2021) Related Software: GitHub; epiABC; RcppArmadillo; Armadillo; R; Expokit; … Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)
libspatialSEIR Software Authors: Brown , G. D. Cited in: 3 Publications (2016–2021) Related Software: deBInfer; Rtwalk; t-walk; Stan; R0; NetLogo; … Main Fields: Ordinary differential equations (34-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)
PhyloGeoTool Software Authors: Libin, P., et al. Cited in: 3 Publications (2002–2022) Related Software: DEPP; INSTRAL; UShER; HmmUFOtu; MLTreeMap; SEPP; … Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
SSF.App.Worm Software Authors: Liljenstam M. Cited in: 1 Publication (2008) Related Software: JADE; ipc; PEPA; PRISM Main Fields: Computer science (68-XX)
epydemic Software Authors: Simon Dobson Cited in: 0 Publications Related Software: EoN; SciPy; EpiModel; Graph-tool; Python; SamplableSet; … Main Fields: –
ETAS Software Authors: Abdollah Jalilian, Jiancang Zhuang Cited in: 0 Publications Related Software: etasFLP; R; etas8p; SAPP; etas_solve; PtProcess; … Main Fields: –
etas_solve Software Authors: Kasahara, A., Yagi, Y., Enescu, B. Cited in: 1 Publication (2018) Related Software: PtProcess; spatstat; etas8p; SAPP; Rcpp; etasFLP; … Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX)
Pathogen.jl Software Authors: Justin Angevaare, Zeny Feng, Rob Deardon Cited in: 0 Publications Related Software: Julia; FractionalDiffEq.jl; FdeSolver; Matlab; Optim; Turing; … Main Fields: –
arcospy Software Authors: Steven Rich, Andrew Ba Tran, Aaron Williams, Jason Holt, Jeffery Sauer, Taylor M. Oshan Cited in: 0 Publications Related Software: urltools; Python; R; arcos Main Fields: –
asymptor Software Authors: Hugo Gruson Cited in: 1 Publication (2020) Related Software: EstimateS Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
comomodels Software Authors: van der Vegt, Solveig A.; Dai, Liangti; Bouros, Ioana; Farm, Hui Jia; Creswell, Richard; Dimdore-Miles, Oscar; Cazimoglu, Idil; Bajaj, Sumali; Hopkins, Lyle; Seiferth, David; Cooper, Fergus; Lei, Chon Lok; Gavaghan, David; Lambert, Ben Cited in: 1 Publication (2022) Related Software: Plotly; R Markdown; ggplot2; R Main Fields: Biology and other natural sciences (92-XX)
DataFlasks Software Authors: Francisco Maia, Miguel Matos, Ricardo Vilaça, José Pereira, Rui Oliveira, Etienne Rivière Cited in: 1 Publication (2020) Related Software: Coq; TLA; MODIST; D3S; DCatch; SPLAY; … Main Fields: Computer science (68-XX)
dynamic_survival_analysis Software Authors: KhudaBukhsh, Wasiur R.; Bastian, Caleb Deen; Wascher, Matthew; Klaus, Colin; Sahai, Saumya Yashmohini; Weir, Mark H.; Kenah, Eben; Root, Elisabeth; Tien, Joseph H.; Rempała, Grzegorz A. Cited in: 1 Publication (2023) Related Software: GitHub; Python Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
Eir Software Authors: Mathew Jacob Cited in: 0 Publications Related Software: EpiModel; EoN; Python Main Fields: –
EpidemiOptim Software Authors: Colas, Cédric; Hejblum, Boris; Rouillon, Sebastien; Thiébaut, Rodolphe; Oudeyer, Pierre-Yves; Moulin-Frier, Clément; Prague, Mélanie Cited in: 1 Publication (2021) Related Software: torchdiffeq; Agent57; OpenAI Gym Main Fields: Computer science (68-XX)
EpiFire Software Authors: Hladish, T.; Melamud, E.; Barrera, L. A.; Galvani, A.; Meyers, L. A. Cited in: 1 Publication (2020) Related Software: FluTE; ANTIGONE; SNOPT; BARON; SCIP Main Fields: Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)
epiPOMS Software Authors: Touloupou, P.; Spencer, S. E. F. Cited in: 1 Publication (2020) Related Software: epiABC; R Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
INDEMICS Software Authors: Bisset, Keith R.; Chen, Jiangzhuo; Deodhar, Suruchi; Feng, Xizhou; Ma, Yifei; Marathe, Madhav V. Cited in: 1 Publication (2014) Related Software: EpiSimdemics; FluTE Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)
InterSpread Plus Software Authors: Stevenson MA, Sanson RL, Stern MW, O’Leary BD, Sujau M, Moles-Benfell N, Morris RS Cited in: 0 Publications Related Software: reshape; Python; igraph; EpiContactTrace; Epigrass; ggplot2; … Main Fields: –
PandemicLP Software Authors: CovidLP team Cited in: 1 Publication (2022) Related Software: CovidLP; shiny; R Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)
PATH 4.0 Software Authors: Singh, Sonza; France, Anne Marie; Chen, Yao-Hsuan; Farnham, Paul G.; Oster, Alexandra M.; Gopalappa, Chaitra Cited in: 1 Publication (2021) Related Software: HIV-TRACE; NetLogo Main Fields: Biology and other natural sciences (92-XX)
SIMID Software Authors: Lilia L. Ramírez-Ramírez, Yulia R. Gel, Mary Thompson, Eileen de Villa, Matt McPherson Cited in: 1 Publication (2016) Related Software: – Main Fields: Combinatorics (05-XX); Statistics (62-XX)
stochasticGEM Software Authors: Eugene Zwane Cited in: 0 Publications Related Software: R; epiR; epibasix; RladyBug; epicalc; Epi; … Main Fields: –
WBR-2019 Software Authors: Walker, James N.; Black, Andrew J.; Ross, Joshua V. Cited in: 1 Publication (2019) Related Software: GitHub; EpiStruct Main Fields: Probability theory and stochastic processes (60-XX); Biology and other natural sciences (92-XX)
bayesianETAS Software Authors: Gordon J. Ross Cited in: 0 Publications Related Software: – Main Fields: –