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Found 46 Software Packages (Results 1–46)

Surveillance

Software Authors:   Michael Höhle, Sebastian Meyer, Michaela Paul, Andrea Riebler, S. Steiner, M. Virtanen, Valentin Wimmer, T. Correa, M. Hofmann, C. Lang
Cited in: 25 Publications (2005–2022)
Related Software: R; SurvStat@RKI; maptools; GMRFLib; EpiEstim; epinet; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

EpiEstim

Software Authors:   Anne Cori
Cited in: 27 Publications (2014–2023)
Related Software: R; GitHub; R0; Surveillance; epinet; tscount; …
Main Fields: Ordinary differential equations (34-XX); Statistics (62-XX); Numerical analysis (65-XX)

Be-CoDiS

Software Authors:   Ivorra, Benjamin; Ngom, Diène; Ramos, Ángel M.
Cited in: 22 Publications (2015–2022)
Related Software: Matlab; iOverbook; TopoChemie-2020; GitHub; pomp
Main Fields: Ordinary differential equations (34-XX); Partial differential equations (35-XX); Statistics (62-XX)

Autograph

Software Authors:   Kim, H.A., Karp, B.
Cited in: 4 Publications (2010–2018)
Related Software: Polygraph; Snort; Hamsa; BLINC; Panorama; KEA; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX); Information and communication theory, circuits (94-XX)

EpiModel

Software Authors:   Samuel Jenness, Steven M. Goodreau, Martina Morris, Emily Beylerian, Skye Bender-deMoll, Kevis Weiss
Cited in: 7 Publications (2020–2022)
Related Software: R; Python; SciPy; EoN; Surveillance; epinet; …
Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX); Probability theory and stochastic processes (60-XX)

epinet

Software Authors:   Chris Groendyke, David Welch, David Hunter
Cited in: 10 Publications (2011–2022)
Related Software: R; ergm; Surveillance; EpiEstim; EpiModel; EpiILMCT; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Numerical analysis (65-XX)

epiABC

Software Authors:   Kypraios, Theodore; Neal, Peter; Prangle, Dennis
Cited in: 11 Publications (2017–2021)
Related Software: R; abc; BayesDA; GitHub; abctools; GPS-ABC; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

FluTE

Software Authors:   Chao, D. L.; Halloran, M. E.; Obenchain, V. J.; Longini Jr, I. M.
Cited in: 11 Publications (2013–2022)
Related Software: Covasim; emdbook; DEDiscover; EpiFire; ANTIGONE; SNOPT; …
Main Fields: Dynamical systems and ergodic theory (37-XX); Statistics (62-XX); Computer science (68-XX)

COVID-ABS

Software Authors:   Silva, Petrônio C. L.; Batista, Paulo V. C.; Lima, Hélder S.; Alves, Marcos A.; Guimarães, Frederico G.; Silva, Rodrigo C. P.
Cited in: 8 Publications (2020–2022)
Related Software: Covasim; fpp2; usmap; GNAR; rapidminer; ggplot2; …
Main Fields: Ordinary differential equations (34-XX); Probability theory and stochastic processes (60-XX); Statistical mechanics, structure of matter (82-XX)

R0

Software Authors:   Obadia T, Haneef R, Boelle PY
Cited in: 5 Publications (2019–2021)
Related Software: EpiEstim; Surveillance; R; EpiModel; tscount; epinet; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

gleamviz

Software Authors:   Van den Broeck, W., Gioannini, C., Goncalves, B., Quaggiotto, M., Colizza, V., Vespignani, A
Cited in: 7 Publications (2013–2023)
Related Software: plfit; GEMFsim; SNAP; EpiModel; FRED; Epigrass; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

FRED

Software Authors:   Grefenstette, J.J., Brown, S.T., Rosenfeld, R., DePasse, J., Stone, N.T., Cooley, P.C., Wheaton, W.D., Fyshe, A., Galloway, D.D., Sriram, A., et al.
Cited in: 6 Publications (2015–2021)
Related Software: R; GitHub; GEMFsim; SNAP; EpiModel; Epigrass; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

PALOMA

Software Authors:   Cheng Feng, Jane Hillston
Cited in: 4 Publications (2016–2020)
Related Software: SCEL; CARMA; Bio-PEPA; Ntccrt; PEPA; PALOMA; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

RladyBug

Software Authors:   Michael Hoehle, Ulrike Feldmann, Sebastian Meyer
Cited in: 4 Publications (2007–2014)
Related Software: R; amei; CODA; Cobra; Stan; R0; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

amei

Software Authors:   Daniel Merl, Leah R. Johnson, Robert B. Gramacy, Marc S. Mangel
Cited in: 0 Publications
Related Software: R; R0; Surveillance; tscount; EpiModel; RladyBug; …
Main Fields:

GEMFsim

Software Authors:   Faryad Darabi Sahneh, Aram Vajdi, Heman Shakeri, Futing Fan, Caterina Scoglio
Cited in: 3 Publications (2018–2021)
Related Software: SNAP; EpiModel; FRED; Epigrass; gleamviz; NDlib; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistical mechanics, structure of matter (82-XX); Operations research, mathematical programming (90-XX)

UNAIDS

Software Authors:   Ghys PD, Brown T, Grassly NC, Garnett G, Stanecki KA, Stover J, Walker N.
Cited in: 4 Publications (2009–2016)
Related Software: WinBUGS; bayesTFR; bayesLife; bayesPop; bayesDem; mcmc; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

COVID-CAPS

Software Authors:   Parnian Afshar, Shahin Heidarian, Farnoosh Naderkhani, Anastasia Oikonomou, Konstantinos N. Plataniotis, Arash Mohammadi
Cited in: 0 Publications
Related Software: CovXNet; COVID-Net; GitHub; Xception; AlexNet; Grad-CAM; …
Main Fields:

EpiILM

Software Authors:   Vineetha Warriyar. K. V.; Rob Deardon
Cited in: 0 Publications
Related Software: EpiILMCT; epinet; R; hergm; ergm; igraph; …
Main Fields:

EpiILMCT

Software Authors:   Waleed Almutiry, Rob Deardon, Vineetha Warriyar K. V.
Cited in: 0 Publications
Related Software: EpiILM; epinet; R; hergm; ergm; igraph; …
Main Fields:

EpiSIX

Software Authors:   Huang, Senzhong; Peng, Zhihang; Jin, Zhen
Cited in: 3 Publications (2020–2022)
Related Software: RobinX; SPOT; pgRouting; UniCorT; json2run; CPLEX
Main Fields: Operations research, mathematical programming (90-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX); Biology and other natural sciences (92-XX)

EpiStruct

Software Authors:   Black, Andrew J.
Cited in: 3 Publications (2019–2021)
Related Software: GitHub; epiABC; RcppArmadillo; Armadillo; R; Expokit; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

libspatialSEIR

Software Authors:   Brown , G. D.
Cited in: 3 Publications (2016–2021)
Related Software: deBInfer; Rtwalk; t-walk; Stan; R0; NetLogo; …
Main Fields: Ordinary differential equations (34-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

PhyloGeoTool

Software Authors:   Libin, P., et al.
Cited in: 3 Publications (2002–2022)
Related Software: DEPP; INSTRAL; UShER; HmmUFOtu; MLTreeMap; SEPP; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

SSF.App.Worm

Software Authors:   Liljenstam M.
Cited in: 1 Publication (2008)
Related Software: JADE; ipc; PEPA; PRISM
Main Fields: Computer science (68-XX)

epydemic

Software Authors:   Simon Dobson
Cited in: 0 Publications
Related Software: EoN; SciPy; EpiModel; Graph-tool; Python; SamplableSet; …
Main Fields:

ETAS

Software Authors:   Abdollah Jalilian, Jiancang Zhuang
Cited in: 0 Publications
Related Software: etasFLP; R; etas8p; SAPP; etas_solve; PtProcess; …
Main Fields:

etas_solve

Software Authors:   Kasahara, A., Yagi, Y., Enescu, B.
Cited in: 1 Publication (2018)
Related Software: PtProcess; spatstat; etas8p; SAPP; Rcpp; etasFLP; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX)

Pathogen.jl

Software Authors:   Justin Angevaare, Zeny Feng, Rob Deardon
Cited in: 0 Publications
Related Software: Julia; FractionalDiffEq.jl; FdeSolver; Matlab; Optim; Turing; …
Main Fields:

arcospy

Software Authors:   Steven Rich, Andrew Ba Tran, Aaron Williams, Jason Holt, Jeffery Sauer, Taylor M. Oshan
Cited in: 0 Publications
Related Software: urltools; Python; R; arcos
Main Fields:

asymptor

Software Authors:   Hugo Gruson
Cited in: 1 Publication (2020)
Related Software: EstimateS
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

comomodels

Software Authors:   van der Vegt, Solveig A.; Dai, Liangti; Bouros, Ioana; Farm, Hui Jia; Creswell, Richard; Dimdore-Miles, Oscar; Cazimoglu, Idil; Bajaj, Sumali; Hopkins, Lyle; Seiferth, David; Cooper, Fergus; Lei, Chon Lok; Gavaghan, David; Lambert, Ben
Cited in: 1 Publication (2022)
Related Software: Plotly; R Markdown; ggplot2; R
Main Fields: Biology and other natural sciences (92-XX)

DataFlasks

Software Authors:   Francisco Maia, Miguel Matos, Ricardo Vilaça, José Pereira, Rui Oliveira, Etienne Rivière
Cited in: 1 Publication (2020)
Related Software: Coq; TLA; MODIST; D3S; DCatch; SPLAY; …
Main Fields: Computer science (68-XX)

dynamic_survival_analysis

Software Authors:   KhudaBukhsh, Wasiur R.; Bastian, Caleb Deen; Wascher, Matthew; Klaus, Colin; Sahai, Saumya Yashmohini; Weir, Mark H.; Kenah, Eben; Root, Elisabeth; Tien, Joseph H.; Rempała, Grzegorz A.
Cited in: 1 Publication (2023)
Related Software: GitHub; Python
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

Eir

Software Authors:   Mathew Jacob
Cited in: 0 Publications
Related Software: EpiModel; EoN; Python
Main Fields:

EpidemiOptim

Software Authors:   Colas, Cédric; Hejblum, Boris; Rouillon, Sebastien; Thiébaut, Rodolphe; Oudeyer, Pierre-Yves; Moulin-Frier, Clément; Prague, Mélanie
Cited in: 1 Publication (2021)
Related Software: torchdiffeq; Agent57; OpenAI Gym
Main Fields: Computer science (68-XX)

EpiFire

Software Authors:   Hladish, T.; Melamud, E.; Barrera, L. A.; Galvani, A.; Meyers, L. A.
Cited in: 1 Publication (2020)
Related Software: FluTE; ANTIGONE; SNOPT; BARON; SCIP
Main Fields: Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

epiPOMS

Software Authors:   Touloupou, P.; Spencer, S. E. F.
Cited in: 1 Publication (2020)
Related Software: epiABC; R
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

INDEMICS

Software Authors:   Bisset, Keith R.; Chen, Jiangzhuo; Deodhar, Suruchi; Feng, Xizhou; Ma, Yifei; Marathe, Madhav V.
Cited in: 1 Publication (2014)
Related Software: EpiSimdemics; FluTE
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

InterSpread Plus

Software Authors:   Stevenson MA, Sanson RL, Stern MW, O’Leary BD, Sujau M, Moles-Benfell N, Morris RS
Cited in: 0 Publications
Related Software: reshape; Python; igraph; EpiContactTrace; Epigrass; ggplot2; …
Main Fields:

PandemicLP

Software Authors:   CovidLP team
Cited in: 1 Publication (2022)
Related Software: CovidLP; shiny; R
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

PATH 4.0

Software Authors:   Singh, Sonza; France, Anne Marie; Chen, Yao-Hsuan; Farnham, Paul G.; Oster, Alexandra M.; Gopalappa, Chaitra
Cited in: 1 Publication (2021)
Related Software: HIV-TRACE; NetLogo
Main Fields: Biology and other natural sciences (92-XX)

SIMID

Software Authors:   Lilia L. Ramírez-Ramírez, Yulia R. Gel, Mary Thompson, Eileen de Villa, Matt McPherson
Cited in: 1 Publication (2016)
Related Software:
Main Fields: Combinatorics (05-XX); Statistics (62-XX)

stochasticGEM

Software Authors:   Eugene Zwane
Cited in: 0 Publications
Related Software: R; epiR; epibasix; RladyBug; epicalc; Epi; …
Main Fields:

WBR-2019

Software Authors:   Walker, James N.; Black, Andrew J.; Ross, Joshua V.
Cited in: 1 Publication (2019)
Related Software: GitHub; EpiStruct
Main Fields: Probability theory and stochastic processes (60-XX); Biology and other natural sciences (92-XX)

bayesianETAS

Software Authors:   Gordon J. Ross
Cited in: 0 Publications
Related Software:
Main Fields: