×

Found 12 Software Packages (Results 1–12)

VarScan

Software Authors:   Koboldt DC, Zhang Q, Larson DE, Shen D, McLellan MD, Lin L, Miller CA, Mardis ER, Ding L, Wilson RK
Cited in: 7 Publications (2012–2019)
Related Software: Samtools; Trimmomatic; GATK; SNVMix; edgeR; mrsFAST; …
Main Fields: General and overarching topics; collections (00-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

SNVer

Software Authors:   Zhi Wei, Wei Wang, Pingzhao Hu, Gholson J. Lyon, Hakon Hakonarson
Cited in: 3 Publications (2013–2018)
Related Software: Samtools; GATK; ExomeWalker; BCFtools; HTQC; Jannovar; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)

TFisher

Software Authors:   Hong Zhang, Zheyang Wu
Cited in: 1 Publication (2020)
Related Software: R; genetics; RcppEigen; Bioconductor; gap; Cubature; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Information and communication theory, circuits (94-XX)

ExomeCNV

Software Authors:   Sathirapongsasuti, J. F., H. Lee, B. A. Horst, G. Brunner, A. J. Cochran, S. Binder, J. Quackenbush, S. F. Nelson
Cited in: 1 Publication (2011)
Related Software: CNV-seq; BioHMM; DEseq; edgeR; Bioconductor; R
Main Fields: Biology and other natural sciences (92-XX)

ExomeWalker

Software Authors:   Damian Smedley,Sebastian Kohler, Johanna Christina Czeschik,Joanna Amberger, Carol Bocchini, Ada Hamosh, Julian Veldboer,Tomasz Zemojtel, Peter N Robinson
Cited in: 1 Publication (2018)
Related Software: BCFtools; HTQC; SNVer; Jannovar; HitWalker; SomaticSignatures; …
Main Fields: Biology and other natural sciences (92-XX)

Omics Pipe

Software Authors:   Fisch KM, Meissner T, Gioia L, Ducom JC, Carland TM, Loguercio S, et al.
Cited in: 0 Publications
Related Software: Anaconda; IPython; PyPI; BioRuby; BioSQL; BioJava; …
Main Fields:

SeqEM

Software Authors:   E. R. Martin, D. D. Kinnamon, M. A. Schmidt, E. H. Powell, S. Zuchner, R. W. Morris
Cited in: 1 Publication (2012)
Related Software:
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)

Strelka

Software Authors:   Christopher T. Saunders, Wendy S. W. Wong, Sajani Swamy, Jennifer Becq,Lisa J. Murray, R. Keira Cheetham
Cited in: 1 Publication (2018)
Related Software: HaploReg; MapSplice; eSNV-detect; Salmon; ZOOM; SomaticSniper; …
Main Fields: Biology and other natural sciences (92-XX)

svmod

Software Authors:   Kuhn, Matthias; Stange, Thoralf; Herold, Sylvia; Thiede, Christian; Roeder, Ingo
Cited in: 1 Publication (2018)
Related Software:
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)

VarSifter

Software Authors:   Teer JK, Green ED, Mullikin JC, Biesecker LG
Cited in: 1 Publication (2016)
Related Software: Galaxy; ROAST; featureCounts; Rsubread; recount; PROPER; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

WEP

Software Authors:   M. D’Antonio, P. D. De Meo, D. Paoletti, B. Elmi, M. Pallocca, N. Sanna, E. Picardi, G. Pesole, and T. Castrignanò
Cited in: 0 Publications
Related Software: Taverna; Docker; GATK; SciPhy; RAxML; Swift; …
Main Fields:

Sam2bam

Software Authors:   Takeshi Ogasawara, Yinhe Cheng, Tzy-Hwa Kathy Tzeng
Cited in: 0 Publications
Related Software:
Main Fields: