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Found 180 Software Packages (Results 1–100)

EGO

Software Authors:   TOMLAB; D. R. Jones, Matthias Schonlau, William J. Welch
Referenced in: 401 Publications (1998–2022)
Related Software: DACE; DiceOptim; MLMSRBF; DiceKriging; SPACE; ParEGO; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

FRK

Software Authors:   Andrew Zammit-Mangion, Timothy Davis, Patrick Amestoy, Iain Duff, John K. Reid
Referenced in: 120 Publications (2008–2022)
Related Software: spBayes; GMRFLib; R; R-INLA; BayesDA; GPvecchia; …
Main Fields: General and overarching topics; collections (00-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

AK-MCS

Software Authors:   B. Echard, N. Gayton, M. Lemaire
Referenced in: 75 Publications (2012–2022)
Related Software: DACE; EGO; UQLab; Matlab; PRMLT; top.m; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

fields

Software Authors:   Douglas Nychka; Reinhard Furrer; Stephan Sain
Referenced in: 30 Publications (2007–2022)
Related Software: R; spBayes; geoR; gstat; RandomFields; tgp; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

geoR

Software Authors:   Paulo J. Ribeiro Jr; Peter J. Diggle
Referenced in: 36 Publications (2003–2022)
Related Software: R; spBayes; RandomFields; fields; gstat; R-INLA; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

OSCAR

Software Authors:   Bondell, Howard D.; Reich, Brian J.
Referenced in: 57 Publications (2008–2022)
Related Software: glmnet; R; ElemStatLearn; glasso; covTest; blasso; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

frailtypack

Software Authors:   Virginie Rondeau, Juan R. Gonzalez, Yassin Mazroui, Audrey Mauguen, Amadou Diakite
Referenced in: 31 Publications (2007–2022)
Related Software: R; survival; coxme; SAS; phmm; frailtyHL; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

Memtype-2L

Software Authors:   Chou, K. C.; Shen, H. B.
Referenced in: 39 Publications (2008–2019)
Related Software: Cell-PLoc; ProtIdent; Signal-CF; Euk-mPLoc; GPCR-CA; EzyPred; …
Main Fields: Mathematical logic and foundations (03-XX); Statistics (62-XX); Computer science (68-XX)

SPACE

Software Authors:   Matthias Schonlau
Referenced in: 34 Publications (1998–2022)
Related Software: EGO; DACE; DiceOptim; DiceKriging; ParEGO; MOEA/D; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

pLoc-mEuk

Software Authors:   Cheng, X.; Xiao, X.
Referenced in: 30 Publications (2017–2019)
Related Software: pLoc-mPlant; iRNA-PseColl; pLoc-mAnimal; Pse-in-One; iRSpot-EL; pLoc-mGneg; …
Main Fields: Partial differential equations (35-XX); Statistics (62-XX); Computer science (68-XX)

AFP-Pred

Software Authors:   Kandaswamy, K. K.; Martinetz, T.; Moller, S.; Suganthan, P. N.; Sridharan, S.; Pugalenthi, G.
Referenced in: 23 Publications (2011–2019)
Related Software: Cell-PLoc; iLoc-Euk; iRSpot-TNCPseAAC; iDNA-Prot; iSNO-PseAAC; iPPI-Esml; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

GET

Software Authors:   Mari Myllymäki, Tomáš Mrkvička, Pavel Grabarnik, Ute Hahn, Mikko Kuronen, Michael Rost, Henri Seijo
Referenced in: 23 Publications (2016–2022)
Related Software: R; bootlib; fda (R); spatial; fda.usc; spatstat; …
Main Fields: Algebraic topology (55-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

ViennaRNA

Software Authors:   Lorenz, Ronny and Bernhart, Stephan H. and Höner zu Siederdissen, Christian and Tafer, Hakim and Flamm, Christoph and Stadler, Peter F. and Hofacker, Ivo L.
Referenced in: 23 Publications (2002–2022)
Related Software: Rfam; VARNA; NNDB; RNAsubopt; KEGG; Mfold; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Computer science (68-XX)

GRASP92

Software Authors:   F.A. Parpia, C.F. Fischer, I.P. Grant
Referenced in: 22 Publications (1999–2013)
Related Software: RELCI; REOS99; DVDSON; HF86; grasp2k; LAPACK; …
Main Fields: Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX); Mechanics of particles and systems (70-XX)

iLoc-Animal

Software Authors:   Lin, W. -Z.; Fang, J. -A.; Xiao, X.; Chou, K. -C.
Referenced in: 20 Publications (2013–2019)
Related Software: iLoc-Hum; iRSpot-PseDNC; iLoc-Virus; iLoc-Euk; iAMP-2L; iSNO-PseAAC; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

RAPTOR

Software Authors:   Xu, J.; Li, M.; Lin, G.; Kim, D.; Xu, Y.
Referenced in: 15 Publications (2002–2021)
Related Software: GenThreader; CPLEX; BLAST; PSI-BLAST; FUGUE; GreedyBB; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

I-TASSER

Software Authors:   A. Roy, A. Kucukural, Y. Zhang
Referenced in: 14 Publications (2012–2022)
Related Software: BLAST; PSI-BLAST; CHARMM; MODELLER; SWISS-MODEL; PROCHECK; …
Main Fields: Computer science (68-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

EzyPred

Software Authors:   Shen, H.B.; Chou, K.C.
Referenced in: 16 Publications (2008–2015)
Related Software: Cell-PLoc; Signal-CF; Memtype-2L; ProtIdent; Signal-3L; Euk-mPLoc; …
Main Fields: Mathematical logic and foundations (03-XX); Combinatorics (05-XX); Statistics (62-XX)

DALEX

Software Authors:   Przemyslaw Biecek
Referenced in: 5 Publications (2019–2022)
Related Software: R; pdp; iml; lime; ggplot2; InterpretML; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

pSumo-CD

Software Authors:   Jia, J.; Zhang, L.; Liu, Z.
Referenced in: 14 Publications (2016–2019)
Related Software: pSuc-Lys; iSuc-PseOpt; Prnam-PC; iCar-PseCp; iPTM-mLys; iRSpot-PseDNC; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

tscount

Software Authors:   Tobias Liboschik; Roland Fried; Konstantinos Fokianos; Philipp Probst; Jonathan Rathjens
Referenced in: 9 Publications (2019–2022)
Related Software: R; acp; glarma; Surveillance; gamlss.util; R-INLA; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX)

acebayes

Software Authors:   Antony Overstall, David Woods, Maria Adamou
Referenced in: 10 Publications (2018–2020)
Related Software: R; BayesDA; OptimalDesign; SSN; geospt; spsurvey; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

DINAMelt

Software Authors:   Nicholas R. Markham; Michael Zuker
Referenced in: 7 Publications (2007–2011)
Related Software: OligoArray; Sfold; Mfold; tRNAscan-SE; UNAFold; RNAshapes; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Statistical mechanics, structure of matter (82-XX)

GeneMANIA

Software Authors:   Mostafavi, S., Ray, D., Warde-Farley, D., Grouios, C., Morris, Q.
Referenced in: 9 Publications (2012–2021)
Related Software: Cytoscape; STRING; BioGRID; SHOGUN; BLAST; PSI-BLAST; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

LOCSVMPSI

Software Authors:   Xie, D.; Li, A.; Wang, M.; Fan, Z.; Feng, H.
Referenced in: 7 Publications (2008–2016)
Related Software: ESLpred; Cell-PLoc; Esub8; WoLF PSORT; Euk-mPLoc; Euk-PLoc; …
Main Fields: Harmonic analysis on Euclidean spaces (42-XX); Statistics (62-XX); Computer science (68-XX)

SVM-Prot

Software Authors:   –
Referenced in: 9 Publications (2006–2019)
Related Software: LIBSVM; Cell-PLoc; Cd-hit; GPCR-CA; Pfam; BLAST; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

PREvaIL

Software Authors:   Song, Jiangning; Li, Fuyi; Takemoto, Kazuhiro; Haffari, Gholamreza; Akutsu, Tatsuya; Chou, Kuo-Chen; Webb, Geoffrey I.
Referenced in: 10 Publications (2018–2019)
Related Software: iDNA6mA-PseKNC; iRNA-PseColl; pLoc-mAnimal; 2L-piRNA; iPromoter-2L; iRSpot-EL; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

COBRA

Software Authors:   Biau, Gérard; Fischer, Aurélie; Guedj, Benjamin; Malley, James D. D.
Referenced in: 9 Publications (2016–2021)
Related Software: SuperLearner; hgam; XGBoost; ElemStatLearn; AdaBoost.MH; gbm; …
Main Fields: General and overarching topics; collections (00-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

COMPASS

Software Authors:   Sadreyev R, Grishin N
Referenced in: 3 Publications (2006–2017)
Related Software: PSI-BLAST; BLAST; ClustalW; Pfam; TM-align; FASTA; …
Main Fields: General and overarching topics; collections (00-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

JPred

Software Authors:   Cuff JA, Clamp ME, Siddiqui AS, Finlay M, Barton GJ
Referenced in: 2 Publications (2004)
Related Software: BLAST; PSI-BLAST; ProtVec; ACCpro; GitHub; SSpro; …
Main Fields: Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

LatticeKrig

Software Authors:   Douglas Nychka, Dorit Hammerling, Stephan Sain, Nathan Lenssen
Referenced in: 5 Publications (2015–2022)
Related Software: R-INLA; R; INLA; FRK; spBayes; GMRFLib; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Geophysics (86-XX)

MTS

Software Authors:   R.S. Tsay
Referenced in: 3 Publications (2016–2022)
Related Software: R; RcppArmadillo; Rcpp; UCI-ml; zoo; ICtest; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Classical thermodynamics, heat transfer (80-XX)

MultiLoc2

Software Authors:   Blum, T.; Briesemeister, S.; Kohlbacher, O.
Referenced in: 6 Publications (2011–2014)
Related Software: MultiLoc; Cell-PLoc; iLoc-Euk; Euk-mPLoc; Plant-mPLoc; Euk-PLoc; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

MultiP-SChlo

Software Authors:   Wang, X., Zhang, W., Zhang, Q., Li, G.-Z.
Referenced in: 8 Publications (2015–2019)
Related Software: Pse-in-One; iRSpot-PseDNC; PseKNC-General; repDNA; PseKNC; PseAAC-General; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

UNAFold

Software Authors:   Markham, N. R., Zuker, M.
Referenced in: 6 Publications (2012–2020)
Related Software: Mfold; Pfold; ViennaRNA; RNAplex; tRNAscan-SE; OligoArray; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Computer science (68-XX)

CBPS

Software Authors:   Christian Fong, Marc Ratkovic, Chad Hazlett, Xiaolin Yang, Kosuke Imai
Referenced in: 4 Publications (2015–2020)
Related Software: sbw; R; optweight; PSW; causalweight; ATE; …
Main Fields: Statistics (62-XX)

geofd

Software Authors:   Giraldo, Ramón; Mateu, Jorge; Delicado, Pedro
Referenced in: 6 Publications (2012–2020)
Related Software: fda (R); R; fdaPDE; gamair; geoR; deldir; …
Main Fields: Approximations and expansions (41-XX); Statistics (62-XX); Numerical analysis (65-XX)

ibr

Software Authors:   Cornillon, Pierre-André; Hengartner, N.W.; Matzner-Løber, E.
Referenced in: 6 Publications (2011–2017)
Related Software: R; mgcv; wavethresh; mboost; lokern; mda; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

PSICOV

Software Authors:   David T. Jones, Daniel W. A. Buchan, Domenico Cozzetto, Massimiliano Pontil
Referenced in: 6 Publications (2014–2021)
Related Software: R; Pfam; BLAST; PSI-BLAST; NNcon; bnlearn; …
Main Fields: Statistics (62-XX); Statistical mechanics, structure of matter (82-XX); Operations research, mathematical programming (90-XX)

QMEAN

Software Authors:   P. Benkert, M. Kunzli, T. Schwede
Referenced in: 2 Publications (2014–2017)
Related Software: SWISS-MODEL; PROCHECK; MODELLER; VaxiJen; I-TASSER; Bcepred; …
Main Fields: General and overarching topics; collections (00-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

RONN

Software Authors:   Zheng Rong Yang, Rebecca Thomson, Philip McNeil, Robert M. Esnouf
Referenced in: 5 Publications (2013–2019)
Related Software: IUPred; GlobPlot; FoldUnfold; CUDA; FoldIndex; PlantTFDB; …
Main Fields: Mathematical logic and foundations (03-XX); Statistics (62-XX); Computer science (68-XX)

SCWRL4

Software Authors:   G. G. Krivov, M. V. Shapovalov, R. L. Dunbrack, Jr.
Referenced in: 6 Publications (2010–2016)
Related Software: CHARMM; I-TASSER; 3DIGARS; iNitro-Tyr; iCTX-Type; iRSpot-PseDNC; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

VIATOC

Software Authors:   Kalmari, J., Backman, J., Visala, A.
Referenced in: 6 Publications (2017–2022)
Related Software: ACADO; qpOASES; GRAMPC; qpDUNES; CasADi; acados; …
Main Fields: (04-XX); Partial differential equations (35-XX); Numerical analysis (65-XX)

PICNIC

Software Authors:   Greenman CD, Bignell G, Butler A, Edkins S, Hinton J, Beare D, Swamy S, Santarius T, Chen L, Widaa S, Futreal PA, Stratton MR
Referenced in: 4 Publications (2010–2016)
Related Software: PLASQ; CARAT; GenoSNP; BRLMM; oligo; Repitools; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Computer science (68-XX)

ASTRX/OBLX

Software Authors:   Ochotta, E.S. , Rutenbar, R.A., Carley, L.R
Referenced in: 4 Publications (2007–2014)
Related Software: CGLS
Main Fields: Computer science (68-XX); Optics, electromagnetic theory (78-XX); Operations research, mathematical programming (90-XX)

ECOTOOL

Software Authors:   Pedregal, D.J., Contreras, J., Sánchez, A.
Referenced in: 4 Publications (2012–2018)
Related Software: CAPTAIN; Matlab; SSpace; PLCP; SQPlab; SAS; …
Main Fields: Operations research, mathematical programming (90-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX); Systems theory; control (93-XX)

GOtcha

Software Authors:   Martin, D.M., Berriman, M., Barton, G.J.
Referenced in: 3 Publications (2007–2008)
Related Software: GOPET; BayGO; Gaggle; GOLEM; BiNGO; ProbCD; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

RKHS

Software Authors:   Kupresanin, Ana; Shin, Hyejin; King, David; Eubank, R.L.
Referenced in: 5 Publications (2010–2020)
Related Software: fda (R); R; Matlab
Main Fields: Functional analysis (46-XX); Operator theory (47-XX); Probability theory and stochastic processes (60-XX)

RSARF

Software Authors:   Pugalenthi, G.; Kandaswamy, K. K.; Kolatkar, P.
Referenced in: 5 Publications (2012–2019)
Related Software: AFP-Pred; iDNA-Prot; iLoc-Virus; iHyd-PseAAC; iMiRNA-PseDPC; iNitro-Tyr; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

BayesNSGP

Software Authors:   Daniel Turek, Mark Risser
Referenced in: 2 Publications (2020–2022)
Related Software: spBayes; R; INLA; spNNGP; R-INLA; tgp; …
Main Fields: Statistics (62-XX)

DiSMEC

Software Authors:   Babbar, R.; Schölkopf, B.
Referenced in: 4 Publications (2019–2021)
Related Software: FastXML; AnnexML; word2vec; LIBLINEAR; WSABIE; CRAFTML; …
Main Fields: Statistics (62-XX); Computer science (68-XX)

DOMpro

Software Authors:   J. L. Cheng, M. J. Sweredoski, P. Baldi
Referenced in: 3 Publications (2011–2020)
Related Software: UProC; LIBSVM; Scikit; Mathematica; I-TASSER; SW1PerS; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Biology and other natural sciences (92-XX)

Feather-Trace

Software Authors:   Brandenburg B, Anderson J
Referenced in: 4 Publications (2010–2013)
Related Software: AQuoSA; PAPI; LITMUS; CIL; PhTM; STAMP; …
Main Fields: Computer science (68-XX)

FoldUnfold

Software Authors:   Oxana V. Galzitskaya, Sergiy O. Garbuzynskiy, Michail Yu. Lobanov
Referenced in: 3 Publications (2010–2018)
Related Software: IUPred; RONN; GlobPlot; FoldIndex; PlantTFDB; eggNOG; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX); Information and communication theory, circuits (94-XX)

FRegSigComp

Software Authors:   Qi, Xin; Luo, Ruiyan
Referenced in: 4 Publications (2018–2022)
Related Software: fda (R); FRegSigCom; quantreg; pffr; gamair; Chronux; …
Main Fields: Statistics (62-XX)

miTarget

Software Authors:   Kim, S.-K.; Nam, J.-W.; Rhee, J.-K.; Lee, W.-J.; Zhang, B.-T.
Referenced in: 2 Publications (2010–2018)
Related Software: miRBase; miRecords; Cytoscape; gcrma; SolexaQA; DNMAD; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

PoPMuSiC

Software Authors:   Yves Dehouck, Jean Marc Kwasigroch, Dimitri Gilis, Marianne Rooman
Referenced in: 3 Publications (2012–2016)
Related Software: FoldX; Jmol; CHARMM; AUTO-MUTE; CUPSAT; SIB-BLAST; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

pycox

Software Authors:   Kvamme, Håvard; Borgan, Ørnulf; Scheel, Ida
Referenced in: 4 Publications (2019–2021)
Related Software: DeepSurv; survival; GitHub; dynpred; scikit-survival; Statsmodels; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Computer science (68-XX)

spa

Software Authors:   Culp, M.
Referenced in: 2 Publications (2012–2013)
Related Software: R; Manifold Regularization; SGTlight; Spider; mclust; CRAN Task Views; …
Main Fields: Statistics (62-XX); Computer science (68-XX)

ZIBgridfree

Software Authors:   zib.de
Referenced in: 4 Publications (2007–2014)
Related Software: Gromacs; ACPYPE; ZIBMolPy; ZIBAmira; LINCS; Amira; …
Main Fields: Dynamical systems and ergodic theory (37-XX); Probability theory and stochastic processes (60-XX); Numerical analysis (65-XX)

analogue

Software Authors:   Gavin Simpson
Referenced in: 0 Publications
Related Software: R; Tilia; CONISS; C2; rioja; patchwork; …
Main Fields:

BetaSCP

Software Authors:   Ryu, Joonghyun; Kim, Deok-Soo
Referenced in: 3 Publications (2013–2017)
Related Software: TM-align; ARIA; CANDID; CYANA; QTFier; RASP; …
Main Fields: Computer science (68-XX); Operations research, mathematical programming (90-XX)

DeepGO

Software Authors:   Maxat Kulmanov, Mohammed Asif Khan, Robert Hoehndorf
Referenced in: 3 Publications (2021–2022)
Related Software: NetGO; COFACTOR; DeepGOPlus; QAUST; ProTranslator; GOLabeler; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

DelPhiPKa

Software Authors:   Wang, L.; Zhang, M.; Alexov, E.
Referenced in: 3 Publications (2019–2022)
Related Software: MIBPB; DelPhi; DelPhiForce; TMSmesh; APBS
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)

DScribe

Software Authors:   Lauri Himanen, Marc O. J. Jäger, Eiaki V. Morooka, Filippo Federici Canova, Yashasvi S. Ranawat, David Z. Gao, Patrick Rinke, Adam S. Foster
Referenced in: 1 Publication (2022)
Related Software: Python; Scikit; SciPy; ESPResSo++; LAMMPS; OVITO; …
Main Fields: Probability theory and stochastic processes (60-XX); Biology and other natural sciences (92-XX)

EFICAz

Software Authors:   Weidong Tian, Adrian K. Arakaki, Jeffrey Skolnick
Referenced in: 1 Publication (2011)
Related Software: UniProt; PathBLAST; BLAST; PSI-BLAST; KEGG; MUSCLE; …
Main Fields: Biology and other natural sciences (92-XX)

EigenKernel

Software Authors:   Tanaka, Kazuyuki; Imachi, Hiroto; Fukumoto, Tomoya; Kuwata, Akiyoshi; Harada, Yuki; Fukaya, Takeshi; Yamamoto, Yusaku; Hoshi, Takeo
Referenced in: 3 Publications (2019–2020)
Related Software: ELSES; EigenExa; GitHub; ELPA; ScaLAPACK; k-ep; …
Main Fields: Partial differential equations (35-XX); Statistics (62-XX); Numerical analysis (65-XX)

EpiLoc

Software Authors:   Brady, S., Shatkay, H.
Referenced in: 2 Publications (2014–2015)
Related Software: GOASVM; Euk-mPLoc; Cell-PLoc; Signal-CF; iEzy-drug; iSNO-PseAAC; …
Main Fields: Biology and other natural sciences (92-XX)

GPB

Software Authors:   Man Zhang, Yili Hong, Narayanaswamy Balakrishnan
Referenced in: 2 Publications (2018)
Related Software: R; PRMLT; FFTW
Main Fields: Statistics (62-XX)

hCKSAAP_UbSite

Software Authors:   Chen, Z.; Zhou, Y.; Song, J.; Zhang, Z.
Referenced in: 3 Publications (2019–2022)
Related Software: Bastion3; mAHTPred; iBitter-SCM; WEKA; UCI-ml; DeepVF; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

HHblits

Software Authors:   Remmert M, Biegert A, Hauser A, Söding J
Referenced in: 3 Publications (2016–2022)
Related Software: MUSCLE; UniProt; T-coffee; ClustalW; DIALIGN; SPAdes; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Computer science (68-XX)

OligoWalk

Software Authors:   Lu ZJ, Mathews DH
Referenced in: 1 Publication (2015)
Related Software: RNAstructure; EMIRGE; ViennaRNA; TagCleaner; OptiRNAi; ASTALAVISTA; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

PETcofold

Software Authors:   Seemann SE, Richter AS, Gesell T, Backofen R, Gorodkin J
Referenced in: 2 Publications (2012–2015)
Related Software: RNAplex; RactIP; TIRNA; UNAFold; EMIRGE; ViennaRNA; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

pre

Software Authors:   Marjolein Fokkema
Referenced in: 2 Publications (2021–2022)
Related Software: randomForest; R; rpart; C4.5; UCI-ml; partykit; …
Main Fields: Statistics (62-XX); Computer science (68-XX)

ANNIE

Software Authors:   Hong Sain Ooi, Chia Yee Kwo, Michael Wildpaner, Fernanda L. Sirota, Birgit Eisenhaber, Sebastian Maurer-Stroh, Wing Cheong Wong, Alexander Schleiffer, Frank Eisenhaber, Georg Schneider
Referenced in: 1 Publication (2016)
Related Software: PlantTFDB; eggNOG; ELM; dbCAN; antiSMASH; dissectHMMER; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

AptRank

Software Authors:   Jiang, B., Kloster, K., Gleich, D.F., Gribskov, M.
Referenced in: 2 Publications (2020–2021)
Related Software: RANKS; EGAD; diffuStats; GeneMANIA; DisGeNET; STRING
Main Fields: Combinatorics (05-XX); Probability theory and stochastic processes (60-XX); Biology and other natural sciences (92-XX)

ARGO

Software Authors:   Oleg V. Vishnevsky, Nikolay A. Kolchanov
Referenced in: 1 Publication (2013)
Related Software: WordSpy; MotifMiner; WebMOTIFS; fREDUCE; SPACER; MUSA; …
Main Fields: Biology and other natural sciences (92-XX)

bamboo

Software Authors:   Li Q, Dahl DB, Vannucci M, Hyun Joo, Tsai JW
Referenced in: 0 Publications
Related Software: shallot; rscala; CRAN; MLlib; SparkR; sparklyr; …
Main Fields:

CONCORD

Software Authors:   Wei, Y.; Thompson, J.; Floudas, C.A.
Referenced in: 2 Publications (2012)
Related Software: BLAST; PSI-BLAST; Mfold; CASP9
Main Fields: Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

ConFunc

Software Authors:   Mark N. Wass, Michael J. E. Sternberg
Referenced in: 1 Publication (2010)
Related Software: ConSeq; PSLpred; iTOL; MAMMOTH; TM-align; BLAST; …
Main Fields: Biology and other natural sciences (92-XX)

DCMOGADES

Software Authors:   Okuda, Tamaki; Hiroyasu, Tomoyuki; Miki, Mitsunori; Kamiura, Jiro; Watanabe, Shinaya
Referenced in: 2 Publications (2002–2005)
Related Software: MOGADES; SPEA2
Main Fields: Computer science (68-XX); Operations research, mathematical programming (90-XX)

emulator

Software Authors:   Robin K. S. Hankin
Referenced in: 0 Publications
Related Software: calibrator; BACCO; R; MAGICC/SCENGEN; DiceKriging; GPfit; …
Main Fields:

gems

Software Authors:   Nello Blaser; Luisa Vizcaya; Janne Estill; Cindy Zahnd; Bindu Kalesan; Matthias Egger; Thomas Gsponer; Olivia Keiser
Referenced in: 0 Publications
Related Software: R; simsem; lavaan; lavaan.survey; survsim; semPLS; …
Main Fields:

Gene3D

Software Authors:   Yeats C et al
Referenced in: 1 Publication (2017)
Related Software: Hetero; SplitsTree; MrBayes; Tracer; MulRF; iGTP; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

GOPET

Software Authors:   A. Vinayagam, C. del Val, F. Schubert, R. Eils, K.H. Glatting, S. Suhai, R. König
Referenced in: 0 Publications
Related Software: BayGO; Gaggle; GOLEM; GOtcha; BiNGO; ProbCD; …
Main Fields:

H2r

Software Authors:   Rainer Merkl; Matthias Zwick
Referenced in: 2 Publications (2010–2011)
Related Software: AL2CO; SHARP2; meta-PPISP
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

HC-search

Software Authors:   Doppa, J. R., Fern, A., Tadepalli, P.
Referenced in: 2 Publications (2016–2021)
Related Software: Scikit-multiflow; Scikit; HMMPayl
Main Fields: Statistics (62-XX); Computer science (68-XX)

MULTICOM

Software Authors:   Zheng Wang; Jesse Eickholt; Jianlin Cheng
Referenced in: 1 Publication (2014)
Related Software: FT-COMAR; AAindex; BLAST; PSI-BLAST; I-TASSER; NNcon; …
Main Fields: Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

NetGO

Software Authors:   You, R.; Yao, S.; Xiong, Y.; Huang, X.; Sun, F.; Mamitsuka, H.
Referenced in: 2 Publications (2022)
Related Software: DeepGO; COFACTOR; DeepGOPlus; QAUST; ProTranslator; GOLabeler; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

OpenSALICON

Software Authors:   Christopher Lee Thomas
Referenced in: 1 Publication (2019)
Related Software: SUN; SalGAN; DeepGaze II; Caffe; gbvs; Saliency Benchmark; …
Main Fields: Computer science (68-XX); Information and communication theory, circuits (94-XX)

Pinktoe

Software Authors:   Guy P. Nason
Referenced in: 0 Publications
Related Software: R; S-PLUS; tcltk2; PERL; ade4TkGUI; pmg; …
Main Fields:

POIMs

Software Authors:   Sören Sonnenburg, Alexander Zien, Petra Philips, Gunnar Rätsch
Referenced in: 1 Publication (2014)
Related Software: KIRMES
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

PONDR-FIT

Software Authors:   Bin Xue, Roland L. Dunbrack, Robert W. Williams, Keith Dunker, Vladimir N. Uversky
Referenced in: 2 Publications (2011–2016)
Related Software: PyMOL; MPRAP; GOLD; BLAST; PSI-BLAST; svmPRAT; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

PreDisorder

Software Authors:   Xin Deng, Jesse Eickholt, Jianlin Cheng
Referenced in: 1 Publication (2016)
Related Software: PlantTFDB; eggNOG; ELM; dbCAN; antiSMASH; dissectHMMER; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

PROFbval

Software Authors:   Avner Schlessinger, Guy Yachdav, Burkhard Rost
Referenced in: 1 Publication (2016)
Related Software: PlantTFDB; eggNOG; ELM; dbCAN; antiSMASH; dissectHMMER; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

RactIP

Software Authors:   Kato Y, Sato K, Hamada M, Watanabe Y, Asai K, Akutsu T
Referenced in: 2 Publications (2012–2015)
Related Software: RNAplex; PETcofold; TIRNA; UNAFold; EMIRGE; ViennaRNA; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

RBMMMDA

Software Authors:   Chen X.; Clarence Yan C.; Zhang X.; LiZ.; Deng L.; Zhang Y.; Dai Q.
Referenced in: 2 Publications (2017–2018)
Related Software: SFAPS; miRBase
Main Fields: Probability theory and stochastic processes (60-XX); Biology and other natural sciences (92-XX); Systems theory; control (93-XX)

RNAG

Software Authors:   Wei D, Alpert LV, Lawrence CE
Referenced in: 2 Publications (2015–2016)
Related Software: EMIRGE; ViennaRNA; TagCleaner; OligoWalk; OptiRNAi; ASTALAVISTA; …
Main Fields: General and overarching topics; collections (00-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

RobustCalibration

Software Authors:   Mengyang Gu
Referenced in: 2 Publications (2018–2019)
Related Software: RobustGaSP; DiceOptim; DiceKriging; L-BFGS; CRAN; Virtual library; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX)

rocTree

Software Authors:   Yifei Sun, Mei-Cheng Wang, Sy Han Chiou
Referenced in: 1 Publication (2011)
Related Software: C4.5; data.tree; AUC4.5; WeightedROC; ImbTreeEntropy; UCI-ml; …
Main Fields: Computer science (68-XX)