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Found 227 Software Packages (Results 1–100)

fda (R)

Software Authors:   J. O. Ramsay, Hadley Wickham, Spencer Graves, Giles Hooker
Cited in: 1,563 Publications (1997–2022)
Related Software: R; SemiPar; ElemStatLearn; fda.usc; refund; KernSmooth; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

GloptiPoly

Software Authors:   Didier Henrion; Jean-Bernard Lasserre; Johan Loefberg
Cited in: 330 Publications (2003–2022)
Related Software: SeDuMi; YALMIP; Sostools; SDPT3; Matlab; SparsePOP; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX)

Brain Connectivity Toolbox

Software Authors:   Rubinov M, Sporns O.
Cited in: 91 Publications (2011–2022)
Related Software: BrainNet Viewer; GenLouvain; glasso; CliqueTop; GitHub; MVGC; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Operations research, mathematical programming (90-XX)

fda.usc

Software Authors:   Manuel Febrero Bande; Manuel Oviedo de la Fuente; Pedro Galeano; Alicia Nieto; Eduardo Garcia-Portugues
Cited in: 62 Publications (2012–2022)
Related Software: fda (R); R; refund; Rainbow; ggplot2; robustbase; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

refund

Software Authors:   Goldsmith, J.; Greven, S.; Crainiceanu, C.
Cited in: 63 Publications (2012–2022)
Related Software: fda (R); R; SemiPar; gamair; mgcv; fda.usc; …
Main Fields: Operator theory (47-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

edgeR

Software Authors:   Mark D. Robinson; Davis J. McCarthy; Gordon K. Smyth
Cited in: 48 Publications (2011–2021)
Related Software: Bioconductor; R; DEseq; Voom; BaySeq; TopHat; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)

FSL

Software Authors:   M.W. Woolrich, S. Jbabdi, B. Patenaude, M. Chappell, S. Makni, T. Behrens, C. Beckmann, M. Jenkinson, S.M. Smith
Cited in: 41 Publications (2008–2022)
Related Software: AFNI; R; FreeSurfer; Dipy; BayesDA; FMRISTAT; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

HLM

Software Authors:   SSI, Scientific Software International, Inc.,
Cited in: 22 Publications (2002–2016)
Related Software: MLwiN; R; WinBUGS; SPSS; Stata; Mplus; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

REVEAL

Software Authors:   Liang, S., Fuhrman, S., Somogyi, R
Cited in: 24 Publications (2003–2022)
Related Software: KEGG; R; BoolNet; E-CELL; t-SNE; GEPASI; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

Virtual library

Software Authors:   Surjanovic, S., Bingham, D.
Cited in: 28 Publications (2015–2022)
Related Software: EGO; DiceOptim; DiceKriging; L-BFGS; laGP; Spearmint; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

fdasrvf

Software Authors:   J. Derek Tucker
Cited in: 25 Publications (2013–2022)
Related Software: fda (R); R; refund; PhysioToolkit; funHDDC; MFPCA; …
Main Fields: Global analysis, analysis on manifolds (58-XX); Statistics (62-XX); Numerical analysis (65-XX)

AFNI

Software Authors:   Robert W. Cox
Cited in: 16 Publications (2008–2022)
Related Software: FSL; R; FMRISTAT; RNiftyReg; AnalyzeFMRI; oro.nifti; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

GET

Software Authors:   Mari Myllymäki, Tomáš Mrkvička, Pavel Grabarnik, Ute Hahn, Mikko Kuronen, Michael Rost, Henri Seijo
Cited in: 23 Publications (2016–2022)
Related Software: R; bootlib; fda (R); spatial; fda.usc; spatstat; …
Main Fields: Algebraic topology (55-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

PAG

Software Authors:   Martin, Florian
Cited in: 20 Publications (1996–2018)
Related Software: NINJA; BLAS; MPI/MPICH; PHiPAC; PLAPACK; FFTW; …
Main Fields: Mathematical logic and foundations (03-XX); Computer science (68-XX); Systems theory; control (93-XX)

FreeSurfer

Software Authors:   Bruce Fischl
Cited in: 14 Publications (2016–2022)
Related Software: FSL; Gmsh; MRtrix; R; Python; ParaView; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

Demography

Software Authors:   Rob J Hyndman, Heather Booth, Leonie Tickle. John Maindonald
Cited in: 15 Publications (2006–2022)
Related Software: R; StMoMo; forecast; MortalitySmooth; Human Mortality; gnm; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

GATK

Software Authors:   A. McKenna, M. Hanna, E. Banks et al.
Cited in: 16 Publications (2012–2021)
Related Software: Samtools; Trimmomatic; R; BWA; STAR; Bowtie 2; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

PANTHER

Software Authors:   Mi H, Muruganujan A, Thomas PD
Cited in: 10 Publications (2010–2021)
Related Software: UniProt; KEGG; STRING; IntAct; Cytoscape; Bioconductor; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Computer science (68-XX)

Notung

Software Authors:   Chen, K.; Durand, D.; Farach-Colton, M.
Cited in: 13 Publications (2005–2019)
Related Software: RAxML; GIGA; Genetree; TreeFix; ecceTERA; PHYLIP; …
Main Fields: Combinatorics (05-XX); Numerical analysis (65-XX); Computer science (68-XX)

fdatest

Software Authors:   Pini, Alessia; Vantini, Simone
Cited in: 12 Publications (2016–2021)
Related Software: fda (R); R; gprege; AneuRisk65; bootlib; fdahotelling; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

AnalyzeFMRI

Software Authors:   P Lafaye de Micheaux, J L Marchini
Cited in: 1 Publication (2018)
Related Software: R; fmri; RNiftyReg; oro.nifti; cudaBayesreg; oro.dicom; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

Fran

Software Authors:   Elliott, Conal; Hudak, Paul
Cited in: 9 Publications (1997–2020)
Related Software: Haskell; Esterel; Yampa; TBAG; Cayuga; Apache Spark; …
Main Fields: Mathematical logic and foundations (03-XX); Category theory; homological algebra (18-XX); Statistics (62-XX)

Galaxy

Software Authors:   Belinda Giardine, Cathy Riemer, Ross C. Hardison, Richard Burhans, Laura Elnitski, Prachi Shah, Yi Zhang, Daniel Blankenberg, Istvan Albert, James Taylor, Webb Miller, W. James Kent, Anton Nekrutenko
Cited in: 7 Publications (2009–2018)
Related Software: R; Bioconductor; TopHat; edgeR; STAR; BLAT; …
Main Fields: Partial differential equations (35-XX); Statistics (62-XX); Computer science (68-XX)

KmL

Software Authors:   Genolini, Christophe; Falissard, Bruno
Cited in: 10 Publications (2010–2019)
Related Software: R; clusfind; ggplot2; Mplus; kml3d; Silhouettes; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

GCCA

Software Authors:   Anil K. Seth
Cited in: 9 Publications (2011–2021)
Related Software: MVGC; Brain Connectivity Toolbox; BSMART; EEGLAB; MuTE; QUIC; …
Main Fields: Statistics (62-XX); Statistical mechanics, structure of matter (82-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

HOL-Z

Software Authors:   Basin, David; Kuruma, Hironobu; Takaragi, Kazuo; Wolff, Burkhart
Cited in: 5 Publications (2005–2011)
Related Software: Z; HOL; Isabelle/HOL; Circus; csp2B; VPM; …
Main Fields: Computer science (68-XX)

Nengo

Software Authors:   T. Bekolay, J. Bergstra, E. Hunsberger, T. DeWolf, T. C. Stewart, D. Rasmussen, X. Choo, A. R. Voelker, C. Eliasmith
Cited in: 9 Publications (2015–2021)
Related Software: Pynn; TensorFlow; Python; Brian; NEST; PyTorch; …
Main Fields: Partial differential equations (35-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

MNE

Software Authors:   Gramfort, A., Luessi, M., Larson, E., Engemann, D. A., Strohmeier, D., Brodbeck, C.,Parkkonen, L., et al.
Cited in: 7 Publications (2015–2021)
Related Software: Python; Scikit; EEGLAB; NeuroDSP; Brainstorm; FieldTrip; …
Main Fields: Partial differential equations (35-XX); Statistics (62-XX); Numerical analysis (65-XX)

SECT

Software Authors:   Crawford, Lorin; Monod, Anthea; Chen, Andrew X.; Mukherjee, Sayan; Rabadán, Raúl
Cited in: 10 Publications (2020–2023)
Related Software: SciPy; PersistenceImages; TDA; giotto-tda; Python; Scikit; …
Main Fields: Algebraic topology (55-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

starBase

Software Authors:   Li JH, Liu S, Zhou H et al
Cited in: 9 Publications (2012–2019)
Related Software: igraph; lncRNAdb; BioGRID; ARACNE; BLAT; KEGG; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Ordinary differential equations (34-XX)

fdapace

Software Authors:   Xiongtao Dai, Pantelis Z. Hadjipantelis, Hao Ji, Hans-Georg Mueller, Jane-Ling Wang
Cited in: 7 Publications (2020–2022)
Related Software: fda (R); R; mgcv; refund; spBayes; FDboost; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Integral equations (45-XX); Operator theory (47-XX)

GOTM

Software Authors:   Bing Zhang, Denise Schmoyer, Stefan Kirov; Jay Snoddy
Cited in: 6 Publications (2005–2014)
Related Software: FatiGO; KEGG; GOstat; DAVID; Onto-Tools; GOToolBox; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

SPM

Software Authors:   FIL
Cited in: 1 Publication (2017)
Related Software: R; Matlab; fmri; cudaBayesreg; AFNI; oro.nifti; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

Amortized Complexity

Software Authors:   Tobias Nipkow
Cited in: 8 Publications (2015–2021)
Related Software: Isabelle/HOL; Archive Formal Proofs; HOL; Isabelle; Coq; Root Balanced Tree; …
Main Fields: Mathematical logic and foundations (03-XX); Combinatorics (05-XX); Computer science (68-XX)

benchmark

Software Authors:   Manuel J. A. Eugster
Cited in: 8 Publications (2011–2019)
Related Software: R; UCI-ml; MASS (R); mlr; ElemStatLearn; randomForest; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)

EXPANDER

Software Authors:   Shamir, R.; Maron-Katz, A.; Tanay, A.; Linhart, C.; Steinfeld, I.; Sharan, R.; Shiloh, Y.; Elkon, R.
Cited in: 5 Publications (2011–2018)
Related Software: biclust; BicAT; UCI-ml; KEGG; BiVisu; BicNET; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

fdANOVA

Software Authors:   Górecki, Tomasz; Smaga, Łukasz
Cited in: 8 Publications (2019–2022)
Related Software: R; fda (R); mfds; GitHub; fda.usc; rrcov; …
Main Fields: General and overarching topics; collections (00-XX); Functional analysis (46-XX); Probability theory and stochastic processes (60-XX)

GPFDA

Software Authors:   Jian Qing Shi, Yafeng Cheng, Evandro Konzen
Cited in: 4 Publications (2011–2022)
Related Software: fda (R); R; fda.usc; mgcv; refund; FDboost; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Computer science (68-XX)

pyunicorn

Software Authors:   Jonathan F. Donges, Jobst Heitzig, Boyan Beronov, Marc Wiedermann, Jakob Runge, Qing Yi Feng, Liubov Tupikina, Veronika Stolbova, Reik V. Donner, Norbert Marwan, Henk A. Dijkstra, J. Kurths
Cited in: 6 Publications (2015–2021)
Related Software: SciPy; TISEAN; igraph; Python; NetworkX; NumPy; …
Main Fields: Combinatorics (05-XX); Dynamical systems and ergodic theory (37-XX); Statistics (62-XX)

RAST

Software Authors:   Meyer F, Paarmann D, D’Souza M et al
Cited in: 4 Publications (2012–2019)
Related Software: KEGG; MEGAN; Artemis; BLAST; PROSITE; PSI-BLAST; …
Main Fields: General and overarching topics; collections (00-XX); Probability theory and stochastic processes (60-XX); Computer science (68-XX)

D-STEM

Software Authors:   Yaqiong Wang, Francesco Finazzi, Alessandro Fassò
Cited in: 4 Publications (2016–2020)
Related Software: Stem; INLA; gstat; Matlab; R; ggmap; …
Main Fields: Statistics (62-XX); Geophysics (86-XX)

fdakma

Software Authors:   Alice Parodi, Mirco Patriarca, Laura Sangalli, Piercesare Secchi, Simone Vantini, Valeria Vitelli
Cited in: 6 Publications (2014–2019)
Related Software: AneuRisk65; fda (R); R; fdasrvf; tslearn; funHDDC; …
Main Fields: Statistics (62-XX); Geophysics (86-XX)

fdaPDE

Software Authors:   Eardi Lila, Laura M. Sangalli, Jim Ramsay, Luca Formaggia
Cited in: 6 Publications (2017–2022)
Related Software: fda (R); R; RandomFields; gamair; Gstat; SemiPar; …
Main Fields: Approximations and expansions (41-XX); Statistics (62-XX); Numerical analysis (65-XX)

TiML

Software Authors:   Wang, P., Wang, D., Chlipala, A.
Cited in: 7 Publications (2018–2022)
Related Software: TcT; z3; Separation Logic; ACE; OptiMathSAT; Amortized Complexity; …
Main Fields: Computer science (68-XX)

bioNMF

Software Authors:   Montano A, Saez P, Chagoyen M, Tirado F, Carazo JM, Marqui RD
Cited in: 5 Publications (2008–2020)
Related Software: FABIA; DAVID; Wenxiang; MEGAN; ONE; RAST; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Statistics (62-XX); Numerical analysis (65-XX)

Blast2GO

Software Authors:   Conesa, A., Götz, S., García-Gómez, J.M., Terol, J., Talón, M., Robles, M.
Cited in: 2 Publications (2019–2020)
Related Software: DAVID; Pfam; KEGG; MODELLER; InterProScan; I-TASSER; …
Main Fields: General and overarching topics; collections (00-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

BSMART

Software Authors:   Jie Cui, Lei Xu, Steven L. Bressler, Mingzhou Ding, Hualou Liang
Cited in: 2 Publications (2000–2019)
Related Software: EEGLAB; GCCA; Brain Connectivity Toolbox; BRAPH; BASCO; GTG; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

ConsensusPathDB

Software Authors:   Kamburov A, Pentchev K, Galicka H et al
Cited in: 4 Publications (2011–2018)
Related Software: IntAct; BioGRID; igraph; miRNet; SQUAD; Jimena; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

curvclust

Software Authors:   Giacofci, M.; Lambert-Lacroix, S.; Marot, G.; Picard, F.
Cited in: 6 Publications (2013–2018)
Related Software: wavethresh; R; CRAN; mclust; ggmap; CAPUSHE; …
Main Fields: Harmonic analysis on Euclidean spaces (42-XX); Statistics (62-XX)

Expression Profiler

Software Authors:   Jaak Vilo, Misha Kapushesky, Patrick Kemmeren, Ugis Sarkans, Alvis Brazma
Cited in: 1 Publication (2003)
Related Software: Bioconductor; Taverna; R; Matlab; Globus Toolkit; ASKALON; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

MAP123-EP

Software Authors:   Tang, Shan; Li, Ying; Qiu, Hai; Yang, Hang; Saha, Sourav; Mojumder, Satyajit; Liu, Wing Kam; Guo, Xu
Cited in: 6 Publications (2020–2022)
Related Software: MAP123-EPF; StressGAN; SESR; SimNet; EGO; WARP3D; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

PyMVPA

Software Authors:   Hanke, M., Halchenko, Y.O., Sederberg, P.B., Haxby, J.V.
Cited in: 3 Publications (2011–2014)
Related Software: LIBSVM; kohonen; SciPy; NumPy; Scikit; Python; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

roahd

Software Authors:   Nicholas Tarabelloni, Ana Arribas-Gil, Francesca Ieva, Anna Maria Paganoni, Juan Romo
Cited in: 4 Publications (2017–2021)
Related Software: R; fda (R); Rainbow; adamethods; mrfDepth; fda.usc; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX)

SCALE 6.2

Software Authors:   Rearden, B.; Lefebvre, R.; Lefebvre, J.; Clarno, K.; Williams, M.; Petrie, L.; Mertyurek, U.
Cited in: 6 Publications (2015–2021)
Related Software: DENOVO; Trilinos; SCALE; COBRA-TF; AMP; VERA; …
Main Fields: Partial differential equations (35-XX); Statistics (62-XX); Numerical analysis (65-XX)

SyncSpecCnn

Software Authors:   Li Yi, Hao Su, Xingwen Guo, Leonidas Guibas
Cited in: 5 Publications (2018–2022)
Related Software: PointNet; SpectralNet; GSPBOX; CIFAR; AR face; CMU PIE; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Statistical mechanics, structure of matter (82-XX)

WFMM

Software Authors:   Richard Herrick
Cited in: 6 Publications (2006–2018)
Related Software: fda (R); refund; FDboost; pffr; gamair; ElemStatLearn; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX)

BioNet

Software Authors:   Beisser, D.; Klau, G. W.; Dandekar, T.; Mueller, T., Dittrich, M
Cited in: 4 Publications (2014–2018)
Related Software: Bioconductor; gcrma; miRecords; STRING; TopHat; Cytoscape; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

COSTABS

Software Authors:   Albert, E., Arenas, P., Genaim, S., Gómez-Zamalloa, M., Puebla, G.
Cited in: 5 Publications (2012–2017)
Related Software: ABS; SPEED; SACO; JCobox; Erlang; Featherweight Java; …
Main Fields: Computer science (68-XX)

elmap

Software Authors:   Gorban, A.; Zinovyev, A.
Cited in: 5 Publications (2005–2016)
Related Software: UCI-ml; Pathway Commons; CellPublisher; BiNoM; Ginsim; RasMol; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

GOSim

Software Authors:   Holger Fröhlich
Cited in: 4 Publications (2011–2017)
Related Software: TRANSFAC; ClustalW; SeqVis; iGTP; TOPAL; ExaBayes; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)

RKHS

Software Authors:   Kupresanin, Ana; Shin, Hyejin; King, David; Eubank, R.L.
Cited in: 5 Publications (2010–2020)
Related Software: fda (R); R; Matlab
Main Fields: Functional analysis (46-XX); Operator theory (47-XX); Probability theory and stochastic processes (60-XX)

SPM12

Software Authors:   J. Ashburner, G. Barnes, C. Chen, J. Daunizeau, G. Flandin, K. Friston, S. Kiebel, J. Kilner, V. Litvak, R. Moran, et al.
Cited in: 5 Publications (2011–2022)
Related Software: SAS; Stem; semTools; Kernlab; lda; semPlot; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

CLENCH

Software Authors:   Shah N. H., Fedoroff N. V.
Cited in: 2 Publications (2005–2010)
Related Software: GOstat; KEGG; BiNGO; FatiGO; GFINDer; GOToolBox; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

ConExp

Software Authors:   Tatyana Taran; Hanika, T., Hirth, J.
Cited in: 3 Publications (2008–2022)
Related Software: UCI-ml; JGraph; Dia; fca.sty; Galicia; ToscanaJ; …
Main Fields: Computer science (68-XX)

convex_learning

Software Authors:   Chambolle, A.; Holler, M.; Pock, T.
Cited in: 4 Publications (2019–2022)
Related Software: DeepAdverserialRegulariser; compsensing_dip; NETT; GitHub; PyOpenCL; PyCUDA; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Statistics (62-XX); Numerical analysis (65-XX)

ErmineJ

Software Authors:   Lee, H. K.; Braynen, W.; Keshav, K.; Pavlidis, P.
Cited in: 1 Publication (2018)
Related Software: KEGG; Redhyte; GeneMANIA; CoXpress; IntAct; PAGE; …
Main Fields: Statistics (62-XX)

Gaggle

Software Authors:   P.T. Shannon, D.J. Reiss, R. Bonneau, N.S. Baliga
Cited in: 0 Publications
Related Software: GOPET; BayGO; GOLEM; GOtcha; BiNGO; ProbCD; …
Main Fields:

GOToolBox

Software Authors:   Martin D., Brun C., Remy E., Mouren P., Thieffry D., Jacq B.
Cited in: 4 Publications (2006–2012)
Related Software: GOstat; GOTM; FatiGO; Onto-Tools; CLENCH; GFINDer; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Operations research, mathematical programming (90-XX)

INCLUSive

Software Authors:   Coessens, B., Thijs, G., Aerts, S., et al.
Cited in: 2 Publications (2003–2007)
Related Software: MARAN; ElemStatLearn; Pfam; UniProt; Jalview; BioMOBY; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX); Systems theory; control (93-XX)

INMEX

Software Authors:   Xia, J., C.D. Fjell, et al.
Cited in: 2 Publications (2018)
Related Software: R; shiny; limma; edgeR; ExAtlas; ScanGEO; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

integrOmics

Software Authors:   Kim-Anh Lê Cao, Ignacio González, Sébastien Déjean
Cited in: 1 Publication (2019)
Related Software: R; mixOmics; plotly; Highcharter; shiny; OOMPA; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

LS-VISM

Software Authors:   Zhou, S., Cheng, L., Sun, H., Che, J., Dzubiella, J., Li, B., McCammon, J.A.
Cited in: 4 Publications (2016–2023)
Related Software: PETSc; hypre; BoomerAMG; XTROEM-FV; WIGEON; UTBEST3D; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

MFPCA

Software Authors:   Clara Happ
Cited in: 2 Publications (2018–2022)
Related Software: refund; fda (R); R; fdasrvf; funHDDC; funFEM; …
Main Fields: Statistics (62-XX)

npfda

Software Authors:   F. Ferraty; P. Vieu
Cited in: 4 Publications (2009–2016)
Related Software: fda (R); fda.usc; gamair; refund; R; dbstats; …
Main Fields: Statistics (62-XX)

onlinePCA

Software Authors:   Hervé Cardot, David Degras
Cited in: 1 Publication (2022)
Related Software: R; ARPACK; irlba; idm; ade4; FactoMineR; …
Main Fields: Statistics (62-XX)

PoPMuSiC

Software Authors:   Yves Dehouck, Jean Marc Kwasigroch, Dimitri Gilis, Marianne Rooman
Cited in: 3 Publications (2012–2016)
Related Software: FoldX; Jmol; CHARMM; AUTO-MUTE; CUPSAT; SIB-BLAST; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

ProDy

Software Authors:   Bakan, A.
Cited in: 1 Publication (2018)
Related Software: MMTK; BioJava; Biopython; Python; pdb-tools; iScore; …
Main Fields: Biology and other natural sciences (92-XX)

Sawja

Software Authors:   Hubert, Laurent; Barr\'e, Nicolas; Besson, Fr\'ed\'eric; Demange, Delphine; Jensen, Thomas; Monfort, Vincent; Pichardie, David; Turpin, Tiphaine
Cited in: 4 Publications (2011–2022)
Related Software: WALA; PAGAI; DeepWukong; GitHub; LOCKSMITH; LLVM; …
Main Fields: Computer science (68-XX)

SoftExplorer

Software Authors:   Senn, Eric; Laurent, Johann; Julien, Nathalie; Martin, Eric
Cited in: 2 Publications (2005–2010)
Related Software: Wattch; INA; MARTE; SysML; MiBench; SimpleScalar
Main Fields: Computer science (68-XX)

StatCrunch

Software Authors:   StatCrunch; Webster West; Yuping Wu; Duane Heydt
Cited in: 2 Publications (2008–2015)
Related Software: R; WebStat; Statlab; JSci; Vestac; CyberStats; …
Main Fields: Statistics (62-XX)

ASTALAVISTA

Software Authors:   Foissac S, Sammeth M
Cited in: 1 Publication (2015)
Related Software: Exogean; ASPIC; EMBOSS; Minimus; EMIRGE; ViennaRNA; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

CONN

Software Authors:   Whitfield-Gabrieli S, Nieto-Castanon A.
Cited in: 2 Publications (2020–2021)
Related Software: BrainNet Viewer; Brain Connectivity Toolbox; BRAPH; BASCO; GTG; eConnectome; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Statistics (62-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

DeBaCl

Software Authors:   Brian P. Kent, Alessandro Rinaldo, Timothy Verstynen
Cited in: 1 Publication (2017)
Related Software: Dionysus; Gudhi; PHAT; TDA; R; Scikit; …
Main Fields: Statistics (62-XX)

Delly

Software Authors:   T. Rausch, T. Zichner, A. Schlattl, A. M. Stutz, V. Benes, J. O. Korbel
Cited in: 2 Publications (2016–2017)
Related Software: Pindel; LUMPY; wgsim; Samtools; YAHA; GitHub; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

dmGWAS

Software Authors:   Jia P, Zheng S, Long J, Zheng W, Zhao Z.
Cited in: 3 Publications (2016–2020)
Related Software: STRING; Eigenstrat; HAPGEN2; DAVID; miRNet; SQUAD; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

DPARSF

Software Authors:   Chao-Gan Y, Yu-Feng Z
Cited in: 2 Publications (2013–2015)
Related Software: EEGLAB; Matlab; iPhys
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

dynamicnetwork

Software Authors:   Skye Bender-deMol, Martina Morris, James Moody
Cited in: 1 Publication (2022)
Related Software: statnet; ergm; R; network; sna; Ucinet; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX)

FEMME

Software Authors:   Karline Soetaert; Vanni deClippele; Peter Herman
Cited in: 0 Publications
Related Software: MuMax; Netgen; OOMMF; FastMag; Fidimag; Finmag; …
Main Fields:

HEC-FDA

Software Authors:   Hydrologic Engineering Center
Cited in: 3 Publications (2005–2008)
Related Software: MIKE; HEC-DSS
Main Fields: Computer science (68-XX); Geophysics (86-XX); Operations research, mathematical programming (90-XX)

HubAlign

Software Authors:   Somaye Hashemifar; Jinbo Xu
Cited in: 3 Publications (2015–2020)
Related Software: IsoRank; NETAL; GHOST; SPINAL; word2vec; LINE; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

MetaboAnalyst

Software Authors:   Xia J, Mandal R, Sinelnikov IV, Broadhurst D, Wishart DS
Cited in: 1 Publication (2018)
Related Software: plotly; Highcharter; shiny; OOMPA; hgu133plus2.db; HMDB; …
Main Fields: Statistics (62-XX)

MFDA

Software Authors:   Wenxuan Zhong, Ping Ma
Cited in: 2 Publications (2008–2014)
Related Software: R; ftsa; FAR; nfda; HMPTrees; fda.usc; …
Main Fields: Statistics (62-XX)

PACE

Software Authors:   Liu B
Cited in: 2 Publications (2014–2021)
Related Software: fda (R); R; fdaMixed; ftsa; MFDF; refund; …
Main Fields: Statistics (62-XX)

Prophet

Software Authors:   Medina, I.; Montaner, D.; Tárraga, J.; Dopazo, J.
Cited in: 1 Publication (2020)
Related Software: StFinMetrics; CausalImpact; randomForest; M@cbeth; GeneSrF; varSelRF; …
Main Fields: Operations research, mathematical programming (90-XX)

S+ FDA

Software Authors:   Clarkson, Douglas B.; Fraley, Chris; Gu, Charles C.; Ramsay, James O.
Cited in: 3 Publications (2002–2005)
Related Software: S-PLUS; fda (R); R; Matlab
Main Fields: Statistics (62-XX)

StSNP

Software Authors:   A. Uzun, C. M. Leslin, A. Abyzov, V. Ilyin
Cited in: 1 Publication (2012)
Related Software: PMut; UniProt; BLAST; PSI-BLAST; MUSCLE; PharmGKB; …
Main Fields: Biology and other natural sciences (92-XX)

VennMaster

Software Authors:   Kestler, H.; Muller, A.; Kraus, J.M.; Buchholz, M.; Gress, T.M.; Liu, H.; Kane, D.; Zeeberg, B.
Cited in: 2 Publications (2010–2011)
Related Software: VennDiagram; Bioconductor
Main Fields: Numerical analysis (65-XX); Computer science (68-XX)

VeriStar

Software Authors:   Stewart, Gordon; Beringer, Lennart; Appel, Andrew W.
Cited in: 3 Publications (2012–2016)
Related Software: Coq; jStar; Smallfoot; Rocksalt; Gallina; VeriSmall; …
Main Fields: Mathematical logic and foundations (03-XX); Computer science (68-XX)

ArrayMining

Software Authors:   Glaab E, Garibaldi JM, Krasnogor N
Cited in: 0 Publications
Related Software: R; vrml2pov; GGobi; lattice; Cortona3D; fastICA; …
Main Fields:

ASPicDB

Software Authors:   Castrignanò T, D’Antonio M, Anselmo Carrabino D, D’Onorio De Meo A, D'Erchia AM, Licciulli F, Mangiulli M, Mignone F, Pavesi G, Picardi E, Riva A, Rizzi R, Bonizzoni P, Pesole G
Cited in: 1 Publication (2015)
Related Software: EMBOSS; Minimus; EMIRGE; ViennaRNA; TagCleaner; OligoWalk; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)