×

Found 119 Software Packages (Results 1–100)

DAVID

Software Authors:   Huang DW, Sherman BT, Tan Q et al
Cited in: 44 Publications (2007–2022)
Related Software: KEGG; Bioconductor; R; Cytoscape; MAPPFinder; GenMAPP; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

Hum-PLoc

Software Authors:   Chou KC, Shen HB
Cited in: 22 Publications (2007–2019)
Related Software: Cell-PLoc; Euk-mPLoc; Euk-PLoc; Hum-mPLoc; Memtype-2L; LIBSVM; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

miRBase

Software Authors:   Kozomara A, Griffiths-Jones S.
Cited in: 14 Publications (2009–2018)
Related Software: miRecords; KEGG; miTarget; starBase; MiPred; MiRFinder; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Computer science (68-XX)

iSS-PseDNC

Software Authors:   Chen, W.; Feng, P. M.; Lin, H.
Cited in: 16 Publications (2014–2019)
Related Software: PseKNC; iRSpot-PseDNC; iCTX-Type; iRSpot-TNCPseAAC; iACP; pSuc-Lys; …
Main Fields: Partial differential equations (35-XX); Statistics (62-XX); Computer science (68-XX)

SMART

Software Authors:   Letunic, I., Copley, R.R., Schmidt, S., Ciccarelli, F.D., Doerks, T., Schultz, J., Ponting, C.P., Bork, P.
Cited in: 7 Publications (2006–2019)
Related Software: Pfam; UniProt; PROSITE; ClustalW; PSI-BLAST; ELM; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Computer science (68-XX)

OrthoMCL

Software Authors:   Li, L., Stoeckert, C.J., Roos, D.
Cited in: 8 Publications (2006–2020)
Related Software: MSOAR; BLAST; PSI-BLAST; eggNOG; Proteinortho; PHYLIP; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Statistics (62-XX)

BioPortal

Software Authors:   Noy NF, Shah NH, Whetzel PL et al
Cited in: 8 Publications (2016–2020)
Related Software: DBpedia; Pellet; Konclude; Chainsaw; FaCT++; EDAM Browser; …
Main Fields: General and overarching topics; collections (00-XX); Mathematical logic and foundations (03-XX); Statistics (62-XX)

GO-TermFinder

Software Authors:   Boyle, E. I., Weng, S., Gollub, J., Jin, H., Botstein, D., Cherry, J. M., Sherlock, G.
Cited in: 5 Publications (2013–2020)
Related Software: FatiGO; Cytoscape; KEGG; GOstat; iGA; STRING; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

Gpos-PLoc

Software Authors:   Shen, H.B.; Chou, K.C.
Cited in: 11 Publications (2007–2017)
Related Software: Virus-ploc; Hum-PLoc; Hum-mPLoc; Euk-PLoc; Euk-mPLoc; Gneg-mPLoc; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

recount

Software Authors:   Leonardo Collado-Torres, Abhinav Nellore, Andrew E. Jaffe, Margaret A. Taub, Kai Kammers, Shannon E. Ellis, Kasper Daniel Hansen, Ben Langmead, Jeffrey T. Leek
Cited in: 9 Publications (2014–2019)
Related Software: edgeR; Bioconductor; R; BaySeq; CAPUSHE; DESeq2; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

Segmentor3IsBack

Software Authors:   Alice Cleynen, Michel Koskas, Emilie Lebarbier, Guillem Rigaill, Stephane Robin
Cited in: 5 Publications (2017–2021)
Related Software: wbs; changepoint; R; ecp; stepR; FDRSeg; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX)

AmiGO

Software Authors:   Carbon, S., Ireland, A., Mungall, C. J., Shu, S., Marshall, B., Lewis, S.
Cited in: 5 Publications (2010–2018)
Related Software: KEGG; OBO-Edit; DEOD; PRMLT; SMOTE; MARCH-INSIDE; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

ToppGene Suite

Software Authors:   Chen, J., E. E. Bardes, B. J. Aronow, A. G. Jegga
Cited in: 6 Publications (2018–2021)
Related Software: glasso; DEseq; SILGGM; TestBMN; huge; GlobalMIT; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

Babelomics

Software Authors:   Al-Shahrour, F., Minguez, P., Vaquerizas, J. M., Conde, L., Dopazo, J.
Cited in: 3 Publications (2008–2010)
Related Software: FatiGO; GOstat; Bioconductor; R; KEGG; BicAT; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)

Blast2GO

Software Authors:   Conesa, A., Götz, S., García-Gómez, J.M., Terol, J., Talón, M., Robles, M.
Cited in: 2 Publications (2019–2020)
Related Software: DAVID; Pfam; KEGG; MODELLER; InterProScan; I-TASSER; …
Main Fields: General and overarching topics; collections (00-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

CAMERA

Software Authors:   Wu, D.; G. K. Smyth
Cited in: 6 Publications (2015–2021)
Related Software: R; ROAST; pcalg; pyhrt; knockoff; cpi; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Computer science (68-XX)

GOASVM

Software Authors:   Wan, S., Mak, M.W., Kung, S.Y.
Cited in: 6 Publications (2013–2018)
Related Software: Cell-PLoc; iLoc-Gpos; iRSpot-PseDNC; Euk-mPLoc; Plant-mPLoc; iLoc-Hum; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

Prodigal

Software Authors:   Doug Hyatt, Gwo-Liang Chen, Philip F LoCascio, Miriam L Land, Frank W Larimer, Loren J Hauser
Cited in: 3 Publications (2016–2022)
Related Software: HMMER; EasyGene; R; GeneMarkS; CRITICA; TICO; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

Evigan

Software Authors:   Liu Q1, Mackey AJ, Roos DS, Pereira FC
Cited in: 2 Publications (2011–2015)
Related Software: Matlab; SURF; Theano; LIBLINEAR; LIBSVM; ARACHNE; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Computer science (68-XX)

GENETAG

Software Authors:   Tanabe, L.; Xie, N.; Thom, L.H.; Matten, W.; Wilbur, W.J.
Cited in: 1 Publication (2008)
Related Software: GENIA corpus; bootstrap; OpenDMAP; MedPost; ABNER; iHOP; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

GeneWise

Software Authors:   Ewan Birney; Michele Clamp; Richard Durbin
Cited in: 2 Publications (2005–2015)
Related Software: BLAST; PSI-BLAST; DIALIGN; bioperl; Algorithm 97; PAML; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

GOSim

Software Authors:   Holger Fröhlich
Cited in: 4 Publications (2011–2017)
Related Software: TRANSFAC; SeqVis; iGTP; TOPAL; ExaBayes; CLANN; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)

GOtcha

Software Authors:   Martin, D.M., Berriman, M., Barton, G.J.
Cited in: 3 Publications (2007–2008)
Related Software: GOPET; BayGO; Gaggle; GOLEM; BiNGO; ProbCD; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

kdetrees

Software Authors:   Grady Weyenberg, Ruriko Yoshida
Cited in: 5 Publications (2015–2019)
Related Software: BEAST; Mesquite; PhyloNet; ASTRAL-II; Phylo-MCOA; PAML; …
Main Fields: Combinatorics (05-XX); Convex and discrete geometry (52-XX); Statistics (62-XX)

mGene

Software Authors:   Schweikert G, Zien A, Zeller G, Behr J, Dieterich C, Ong CS, Philips P, De Bona F, Hartmann L, Bohlen A
Cited in: 4 Publications (2013–2022)
Related Software: LIBSVM; SeqVis; iGTP; TOPAL; ExaBayes; CLANN; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Computer science (68-XX)

OrthoDB

Software Authors:   Kriventseva EV et al
Cited in: 2 Publications (2013–2017)
Related Software: OrthoMCL; eggNOG; GASTS; MSOAR; Mauve; SeqVis; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

ProbCD

Software Authors:   Ricardo Vêncio, Ilya Shmulevich
Cited in: 0 Publications
Related Software: R; GOPET; BayGO; Gaggle; GOLEM; GOtcha; …
Main Fields:

QuickGO

Software Authors:   Binns, D.; Dimmer, E.; Huntley, R.; Barrell, D.; O'Donovan, C.; Apweiler, R.
Cited in: 4 Publications (2012–2015)
Related Software: Cell-PLoc; GOASVM; Euk-mPLoc; EpiLoc; YLoc; iNitro-Tyr; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

REDfly

Software Authors:   Halfon M, Gallo S, Bergman C
Cited in: 2 Publications (2019–2020)
Related Software: R; GitHub; expansion-network; MaBoSS; Python; Ginsim; …
Main Fields: Biology and other natural sciences (92-XX)

SLAM

Software Authors:   Alexandersson, M., Cawley, S., Pachter, L.
Cited in: 3 Publications (2005–2015)
Related Software: BLAST; ECgene; PSI-BLAST; BLAT; ARACHNE; RePS; …
Main Fields: Probability theory and stochastic processes (60-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

ANNOVAR

Software Authors:   Wang K, Li M, Hakonarson H
Cited in: 3 Publications (2014–2020)
Related Software: R; MEME; KEGG; WEKA; GenABEL; lme4; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Computer science (68-XX)

ExonHunter

Software Authors:   Brejová, B.; Brown, D. G.; Li, M.; Vinař, T.
Cited in: 3 Publications (2007–2008)
Related Software: ESTScan; GlimmerHMM; TigrScan; EasyGene; Pfam; SMART; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Computer science (68-XX)

GenomeGraphs

Software Authors:   Durinck S, Bullard J.
Cited in: 1 Publication (2016)
Related Software: Bioconductor; R; Rtracklayer; edgeR; Galaxy; ROAST; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

GOLEM

Software Authors:   R.S.G. Sealfon, M.A. Hibbs, C. Huttenhower, C.L. Myers, O.G. Troyanskaya
Cited in: 1 Publication (2013)
Related Software: BiNGO; GOPET; BayGO; Gaggle; GOtcha; ProbCD; …
Main Fields: Biology and other natural sciences (92-XX)

INMEX

Software Authors:   Xia, J., C.D. Fjell, et al.
Cited in: 2 Publications (2018)
Related Software: R; shiny; limma; edgeR; ExAtlas; ScanGEO; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

AceView

Software Authors:   Thierry-Mieg D, Thierry-Mieg J
Cited in: 1 Publication (2017)
Related Software: BLAT; SeqVis; iGTP; TOPAL; ExaBayes; CLANN; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

biomaRt

Software Authors:   Durinck S, Huber W,
Cited in: 1 Publication (2016)
Related Software: R; KEGG; Bioconductor; PolyLinkR; TWINAN90; powerpkg; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

CIDANE

Software Authors:   Stefan Canzar, Sandro Andreotti, David Weese, Knut Reinert, Gunnar W Klau
Cited in: 2 Publications (2020–2022)
Related Software: HISAT; Salmon; Gurobi; MultiTrans; Scallop2; ShoRAH; …
Main Fields: Computer science (68-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

COFACTOR

Software Authors:   Roy, A.; Yang, Jianyi; Zhang, Y.
Cited in: 3 Publications (2011–2022)
Related Software: I-TASSER; Tensor2Tensor; DeepGOPlus; DeepGO; QAUST; ProTranslator; …
Main Fields: Fluid mechanics (76-XX); Biology and other natural sciences (92-XX)

DeepGO

Software Authors:   Maxat Kulmanov, Mohammed Asif Khan, Robert Hoehndorf
Cited in: 3 Publications (2021–2022)
Related Software: NetGO; Tensor2Tensor; COFACTOR; DeepGOPlus; QAUST; ProTranslator; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

GENCODE

Software Authors:   Harrow J, Frankish A, Gonzalez JM et al
Cited in: 2 Publications (2017–2018)
Related Software: UCSC genome browser; R; LDlink; FUMA; LocusZoom.js; ShinyGAStool; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

GFINDer

Software Authors:   Masseroli M., Martucci D., Pinciroli F.
Cited in: 1 Publication (2010)
Related Software: KEGG; CLENCH; GOToolBox; BiNGO; GENECODIS; GOTM; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

lumi

Software Authors:   Du P, Kibbe WA, Lin SM
Cited in: 0 Publications
Related Software: beadarray; R; beadarrayExampleData; beadarrayFilter; TM4; Refplus; …
Main Fields:

org.Hs.eg.db

Software Authors:   Marc Carlson
Cited in: 3 Publications (2015–2022)
Related Software: rat2302.db; hgu133a.db; L0Learn; glmnet; OSCAR; GSEA-P; …
Main Fields: Combinatorics (05-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

panp

Software Authors:   Warren, P., Taylor, D., Martini, P. G. V., Jackson, J.. Bienkowska, J.
Cited in: 1 Publication (2015)
Related Software: Affymetrix; Bioconductor; RcppGSL; Ox; Matlab; Bioinformatics Toolbox; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

PatSearch

Software Authors:   Grillo G, Licciulli F, Liuni S et al
Cited in: 2 Publications (2007–2015)
Related Software: EMBOSS; Minimus; EMIRGE; ViennaRNA; TagCleaner; OligoWalk; …
Main Fields: General and overarching topics; collections (00-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

ANOSVA

Software Authors:   Melissa S. Cline, John Blume, Simon Cawley, Tyson A. Clark, Jing-Shan Hu, Gang Lu, Nathan Salomonis, Hui Wang, Alan Williams
Cited in: 2 Publications (2011–2019)
Related Software: aroma.affymetrix; MADS
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)

ArrayMining

Software Authors:   Glaab E, Garibaldi JM, Krasnogor N
Cited in: 0 Publications
Related Software: R; vrml2pov; GGobi; lattice; Cortona3D; fastICA; …
Main Fields:

ASPicDB

Software Authors:   Castrignanò T, D’Antonio M, Anselmo Carrabino D, D’Onorio De Meo A, D'Erchia AM, Licciulli F, Mangiulli M, Mignone F, Pavesi G, Picardi E, Riva A, Rizzi R, Bonizzoni P, Pesole G
Cited in: 1 Publication (2015)
Related Software: EMBOSS; Minimus; EMIRGE; ViennaRNA; TagCleaner; OligoWalk; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

ConFunc

Software Authors:   Mark N. Wass, Michael J. E. Sternberg
Cited in: 1 Publication (2010)
Related Software: ConSeq; MAMMOTH; PSLpred; iTOL; TM-align; BLAST; …
Main Fields: Biology and other natural sciences (92-XX)

CRCView

Software Authors:   Zuoshuang Xiang, Zhaohui S. Qin, Yongqun He
Cited in: 1 Publication (2017)
Related Software: PRMLT; ElemStatLearn
Main Fields: Statistics (62-XX)

DOSE

Software Authors:   Yu G, Wang L, Yan G, He Q
Cited in: 1 Publication (2016)
Related Software: GOSemSim; DisSetSim; clusterProfiler; MeSHSim; DaGO-Fun; DOSim; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

DOSim

Software Authors:   Li, Jiang; Gong, Bingsheng; Chen, Xi; Liu, Tao; Wu, Chao; Zhang, Fan; Li, Chunquan; Li, Xiang; Rao, Shaoqi; Li, Xia
Cited in: 0 Publications
Related Software: DisSetSim; clusterProfiler; GOSemSim; MeSHSim; DOSE; DaGO-Fun; …
Main Fields:

GeneReporter

Software Authors:   A. Bartsch, B. Bunk, I. Haddad, J. Klein, R. Münch, T. Johl, U. Kärst, L. Jänsch, D. Jahn, and I. Retter.
Cited in: 1 Publication (2014)
Related Software: Sourcerer; Wumpus
Main Fields: Computer science (68-XX)

Genomatix

Software Authors:   Genomatix
Cited in: 2 Publications (2014–2017)
Related Software: QUAST; MUMMER; Velvet; SIRENE; UniProt; WebGestalt; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Computer science (68-XX)

GO.db

Software Authors:   M. Carlson
Cited in: 1 Publication (2022)
Related Software: rTANDEM; reactome.db; Reactome; rols; hpar; Rcpp; …
Main Fields: Statistics (62-XX)

GoFigure

Software Authors:   Khan, S.; Situ, G.; Decker, K.; Schmidt, C. J.
Cited in: 2 Publications (2008–2016)
Related Software:
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

GOPET

Software Authors:   A. Vinayagam, C. del Val, F. Schubert, R. Eils, K.H. Glatting, S. Suhai, R. König
Cited in: 0 Publications
Related Software: BayGO; Gaggle; GOLEM; GOtcha; BiNGO; ProbCD; …
Main Fields:

GOurmet

Software Authors:   Doherty, J.M.; Carmichael, L.K.; Mills, J.C.
Cited in: 1 Publication (2010)
Related Software: GOALIE; STEM; GOstat; MCODE
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

GraphWeb

Software Authors:   J. Reimand, L. Tooming, H. Peterson, P. Adler, J. Vilo
Cited in: 1 Publication (2010)
Related Software: g Profiler; KEGGanim
Main Fields: Biology and other natural sciences (92-XX)

MAKER

Software Authors:   Cantarel, B.L., Korf, I., Robb, S.M.C., Parra, G., Ross, E., Moore, B., Holt, C., Sanches Alvarado, A., Yandell, M.
Cited in: 2 Publications (2015–2017)
Related Software: JBROWSE; InterProScan; EasyGene; PCAP; FragGeneScan; AVID; …
Main Fields: General and overarching topics; collections (00-XX); Probability theory and stochastic processes (60-XX); Operations research, mathematical programming (90-XX)

mirTools

Software Authors:   Zhu, E., Zhao, F., Xu, G., Hou, H., Zhou, L., Li, X., Sun, Z., Wu, J.
Cited in: 1 Publication (2012)
Related Software: starBase; ROAST; Velvet; ARACHNE; SpliceTrap; DWE; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

NetGO

Software Authors:   You, R.; Yao, S.; Xiong, Y.; Huang, X.; Sun, F.; Mamitsuka, H.
Cited in: 2 Publications (2022)
Related Software: DeepGO; Tensor2Tensor; COFACTOR; DeepGOPlus; QAUST; ProTranslator; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

ORegAnno

Software Authors:   Obi L. Griffith, Stephen B. Montgomery, Bridget Bernier, et.al.
Cited in: 1 Publication (2016)
Related Software: UniPROBE; InteroPORC; JASPAR; rVISTA; BIPS; modMine; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

PHASTER

Software Authors:   Arndt, D.; Grant, J.R.; Marcu, A.; Sajed, T.; Pon, A.; Liang, Y.; Wishart, D.S.
Cited in: 2 Publications (2017–2020)
Related Software: Phast; Prophinder; iLoc-Virus; Virus-ploc; GitHub; UniProt; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

R3P-Loc

Software Authors:   Wan, Shibiao; Mak, Man-Wai; Kung, Sun-Yuan
Cited in: 2 Publications (2014–2018)
Related Software: UCI-ml; OpenML; OP-ELM; Signal-CF; iEzy-drug; EpiLoc; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

SpliceMachine

Software Authors:   Sven Degroeve, Yvan Saeys, Bernard De Baets, Pierre Rouzé, Yves Van de Peer
Cited in: 1 Publication (2010)
Related Software: GeneSplicer; UCI-ml; WebLogo
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

Transcriptator

Software Authors:   Tripathi, KP; Evangelista, D; Zuccaro, A; Guarracino, MR
Cited in: 2 Publications (2017–2020)
Related Software: intdag; MIM; KEGG; TETRAD; MISSEL; FastAnnotator; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Operations research, mathematical programming (90-XX)

AGS

Software Authors:   Pereira-Flores, E., Glöckner F. O., and Fernandez-Guerra A
Cited in: 1 Publication (2021)
Related Software: BART; rbugs; DPWeibull; spBayesSurv; DPpackage; Stan; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

annotationTools

Software Authors:   Kuhn, Alexandre; Luthi-Carter, Ruth; Delorenzi, Mauro
Cited in: 0 Publications
Related Software: gcrma; Affymetrix; limma; Bioconductor; R
Main Fields:

antiSMASH

Software Authors:   Marnix H. Medema, Kai Blin, Peter Cimermancic, Victor de Jager, Piotr Zakrzewski, Michael A. Fischbach, Tilmann Weber, Eriko Takano, Rainer Breitling
Cited in: 1 Publication (2016)
Related Software: FUNC; Aber-OWL; Ontobee; PlantTFDB; eggNOG; ELM; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

BiRen

Software Authors:   Yang, B.; Liu, F.; Ren, C.; Ouyang, Z.; Xie, Z.; Bo, X.; Shu, W.,
Cited in: 1 Publication (2019)
Related Software: iHyd-PseAAC; Prnam-PC; PSNO; iRSpot-Pse6NC; pLoc_bal-mGpos; iNuc-ext-PseTNC; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

BUSCO

Software Authors:   Robert M. Waterhouse, Mathieu Seppey, Felipe A. Simão, Mose Manni, Panagiotis Ioannidis, Guennadi Klioutchnikov, Evgenia V. Kriventseva, Evgeny M. Zdobnov
Cited in: 0 Publications
Related Software: TRINITY; Bowtie 2; RSeQC; Python; GUESSmyLT
Main Fields:

CAIcal

Software Authors:   Puigbò P, Bravo IG, Garcia-Vallve S
Cited in: 1 Publication (2020)
Related Software: TTA Lynx; CodonW; CodonPhyML; ntCard; ACUA; PAML; …
Main Fields: Biology and other natural sciences (92-XX)

CEGMA

Software Authors:   Parra, G., Bradnam, K., Korf, I.
Cited in: 1 Publication (2015)
Related Software: ARACHNE; RePS; JBROWSE; ABySS; Artemis; NBC; …
Main Fields: Probability theory and stochastic processes (60-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

CoMetGeNe

Software Authors:   Alexandra Zaharia, Bernard Labedan, Christine Froidevaux, Alain Denise
Cited in: 1 Publication (2022)
Related Software:
Main Fields: Operations research, mathematical programming (90-XX)

Conrad

Software Authors:   DeCaprio D, Vinson JP, Pearson MD, Mon- tgomery P, Doherty M, Galagan JE
Cited in: 1 Publication (2017)
Related Software: SeqVis; iGTP; TOPAL; ExaBayes; CLANN; LDDist; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

DaGO-Fun

Software Authors:   Mazandu G.K., Mulder N.J.
Cited in: 0 Publications
Related Software: DisSetSim; clusterProfiler; GOSemSim; MeSHSim; DOSE; DOSim; …
Main Fields:

DiagHunter

Software Authors:   Steven B Cannon, Alexander Kozik, Brian Chan, Richard Michelmore, Nevin D Young
Cited in: 1 Publication (2011)
Related Software: gff2ps; HAPLORE; GRIL; MrBayes; PAUP*; MAVisto; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

DRAGON View

Software Authors:   Christopher M. L. S. Bouton, George Henry, Carlo Colantuoni, Jonathan Pevsner
Cited in: 1 Publication (2003)
Related Software: marrayInput; S-PLUS; ellipse; POE; GeneClust; MAANOVA; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

ExpTreeDB

Software Authors:   Ni M, Ye F, Zhu J, Li Z, Yang S, Yang B, Han L, Wu Y, Chen Y, Li F, Wang S, Bo X
Cited in: 1 Publication (2016)
Related Software: Galaxy; ROAST; featureCounts; Rsubread; recount; PROPER; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

FUMA

Software Authors:   Watanabe K., Taskesen E., van Bochoven A., Posthuma D
Cited in: 0 Publications
Related Software: LDlink; LocusZoom.js; ShinyGAStool; UCSC genome browser; GENCODE; shiny; …
Main Fields:

GeneAround

Software Authors:   Tanoue, Junko; Matoba, Noboru; Yoshikawa, Masatoshi; Uemura, Shunsuke
Cited in: 1 Publication (2002)
Related Software:
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

GeneFriends

Software Authors:   van Dam, S.; Craig, T.; de Magalhaes, J. P.
Cited in: 1 Publication (2020)
Related Software: GitHub; PLANEX; COXPRESdb; TGCnA; clusterProfiler; KEGG; …
Main Fields: Statistics (62-XX)

GeneHug-GEPIS

Software Authors:   Zhang Y, Luoh S-M, Hon LS, Baertsch R, Wood WI, Zhang Z
Cited in: 1 Publication (2016)
Related Software: Galaxy; ROAST; featureCounts; Rsubread; recount; PROPER; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

GeneLibrarian

Software Authors:   Chiang JH, Shin JW, Liu HH, Chin CL
Cited in: 0 Publications
Related Software: KEGG; Bioconductor
Main Fields:

GFF-Ex

Software Authors:   Rastogi A, Gupta D
Cited in: 1 Publication (2017)
Related Software: SeqVis; iGTP; TOPAL; ExaBayes; CLANN; LDDist; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

gren

Software Authors:   Magnus M. Münch
Cited in: 0 Publications
Related Software: CoRF; glmnet; scam; mgcv; fwelnet; graper; …
Main Fields:

GRridge

Software Authors:   Mark A. van de Wiel, Putri W. Novianti
Cited in: 0 Publications
Related Software: gren; CoRF; glmnet; scam; mgcv; fwelnet; …
Main Fields:

GUESSmyLT

Software Authors:   Erik Berner Wik; Hampus Olin; Caitlin Vigetun Haughey; Lisa Klasson; Jacques Dainat
Cited in: 0 Publications
Related Software: BUSCO; TRINITY; Bowtie 2; RSeQC; Python
Main Fields:

IntelliGO

Software Authors:   Sidahmed Benabderrahmane, Malika Smail-Tabbone, Olivier Poch, Amedeo Napoli, Marie-Dominique Devignes
Cited in: 1 Publication (2016)
Related Software: FUNC; Aber-OWL; Ontobee; PlantTFDB; eggNOG; ELM; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

LocusZoom.js

Software Authors:   Boughton A.P., Welch R.P., Flickinger M., VandeHaar P., Taliun D., Abecasis G.R., et al.
Cited in: 0 Publications
Related Software: LDlink; FUMA; ShinyGAStool; UCSC genome browser; GENCODE; shiny; …
Main Fields:

MicrobiomeAnalyst

Software Authors:   Dhariwal, A., J. Chong, et al.
Cited in: 1 Publication (2018)
Related Software: robCompositions; NeatMap; betapart; INMEX; HMP; MetamicrobiomeR; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

NatalieQ

Software Authors:   El-Kebir, M.; Brandt, B.W.; Heringa, J.; Klau, G.W.
Cited in: 1 Publication (2015)
Related Software: L-GRAAL; MAGNA++; NETAL; HubAlign; STRING; KEGG; …
Main Fields: Combinatorics (05-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

Nebula

Software Authors:   Valentina Boeva, Alban Lermine, Camille Barette, Christel Guillouf, Emmanuel Barillot
Cited in: 1 Publication (2016)
Related Software: itsmr; FastQC; ODoSE; Cistrome; ITSM2000; R
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX)

Orione

Software Authors:   Gianmauro Cuccuru, Massimiliano Orsini, Andrea Pinna, Andrea Sbardellati, Nicola Soranzo, Antonella Travaglione, Paolo Uva, Gianluigi Zanetti, Giorgio Fotia
Cited in: 1 Publication (2016)
Related Software: FUNC; Aber-OWL; Ontobee; PlantTFDB; eggNOG; ELM; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

piRBase

Software Authors:   Zhang P, Si X, Skogerbo G et al
Cited in: 1 Publication (2017)
Related Software: SeqVis; iGTP; TOPAL; ExaBayes; CLANN; LDDist; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

piRNAQuest

Software Authors:   Sarkar A, Maji RK, Saha S et al
Cited in: 1 Publication (2017)
Related Software: SeqVis; iGTP; TOPAL; ExaBayes; CLANN; LDDist; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

PIRSF

Software Authors:   Nikolskayaw QN, Arighi CN, Huang H, Barker WC, Wu CH
Cited in: 1 Publication (2017)
Related Software: SeqVis; iGTP; TOPAL; ExaBayes; CLANN; LDDist; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

PlasmoDraft

Software Authors:   Laurent Bréhélin, Jean-François Dufayard, Olivier Gascuel
Cited in: 1 Publication (2009)
Related Software: BNT; IntAct; InterProScan; BLAST
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)