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Found 196 Software Packages (Results 1–100)

COSA

Software Authors:   Friedman, Jerome H.; Meulman, Jacqueline J.
Cited in: 52 Publications (2003–2023)
Related Software: UCI-ml; R; sparcl; mclust; clusfind; Silhouettes; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

edgeR

Software Authors:   Mark D. Robinson; Davis J. McCarthy; Gordon K. Smyth
Cited in: 48 Publications (2011–2021)
Related Software: Bioconductor; R; DEseq; Voom; BaySeq; TopHat; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)

ArrayExpress

Software Authors:   EMBL-EBI; Parkinson, Helen E.; Kapushesky, Misha; Shojatalab, Mohammadreza; Abeygunawardena, Niran; Coulson, R.; Farne, Anna; Holloway, Ele; Kolesnykov, N.; Lilja, P.; Lukk, M.; Mani, R.; Rayner, Tim; Sharma, Anjan; William, E.; Sarkans, Ugis; Brazma, Alvis
Cited in: 13 Publications (2007–2019)
Related Software: Bioconductor; R; gcrma; KEGG; affy; TM4; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

Pse-in-One

Software Authors:   Liu, B.; Liu, F.; Wang, X.; Chen, J.; Fang, L.; Chou, K. -C.:
Cited in: 42 Publications (2015–2021)
Related Software: iRSpot-PseDNC; PseKNC; iPro54-PseKNC; pLoc-mEuk; iRNA-PseColl; pLoc-mAnimal; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

SSS

Software Authors:   Hans, Chris; Dobra, Adrian; West, Mike
Cited in: 39 Publications (2007–2022)
Related Software: EMVS; glmnet; BayesDA; EBayesThresh; glasso; R; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)

PatternHunter

Software Authors:   Ma, B., Tromp, J., Li, M.
Cited in: 29 Publications (2004–2020)
Related Software: SHRiMP; BLAT; MUMMER; LAGAN; Soap; BLASTZ; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Statistics (62-XX)

PseKNC

Software Authors:   Chen, W.; Lei, T. -Y.; Jin, D. -C.; Lin, H.; Chou, K. -C.
Cited in: 31 Publications (2015–2019)
Related Software: iRSpot-PseDNC; Pse-in-One; pLoc-mAnimal; iPTM-mLys; iNuc-PseKNC; pLoc-mPlant; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

LAGAN

Software Authors:   M. Brudno, C.B. Do, G.M. Cooper, M.F. Kim, E. Davydov, E.D. Green, A. Sidow, S. Batzoglou
Cited in: 11 Publications (2005–2019)
Related Software: MUMMER; BLASTZ; PatternHunter; BLAT; MUSCLE; ClustalW; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Computer science (68-XX)

CellProfiler

Software Authors:   Anne E Carpenter, Thouis R Jones, Michael R Lamprecht, Colin Clarke, In Han Kang, Ola Friman, David A Guertin, Joo Han Chang, Robert A Lindquist, Jason Moffat, Polina Golland, David M Sabatini
Cited in: 5 Publications (2018–2020)
Related Software: ImageJ; ImageJ2; Fiji; ImgLib2; scikit-image; ilastik; …
Main Fields: Algebraic topology (55-XX); Statistics (62-XX); Computer science (68-XX)

pymatgen

Software Authors:   Ong, S. P.; Richards, W. D.; Jain, A.; Hautier, G.; Kocher, M.; Cholia, S.; Gunter, D.; Chevrier, V. L.; Persson, K. A.; Ceder, G.
Cited in: 3 Publications (2017–2022)
Related Software: Python; ASE; Matplotlib; SciPy; Spglib; NumPy; …
Main Fields: Group theory and generalizations (20-XX); Convex and discrete geometry (52-XX); Manifolds and cell complexes (57-XX)

SPAdes

Software Authors:   Anton Bankevich, Sergey Nurk, Dmitry Antipov, Alexey A. Gurevich, Mikhail Dvorkin, Alexander S. Kulikov, Valery M. Lesin, Sergey I. Nikolenko, Son Pham, Andrey D. Prjibelski, Alexey V. Pyshkin, Alexander V. Sirotkin, Nikolay Vyahhi, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner
Cited in: 17 Publications (2015–2022)
Related Software: Velvet; IDBA-UD; IDBA; ABySS; GAGE; MEGAHIT; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

OrthoMCL

Software Authors:   Li, L., Stoeckert, C.J., Roos, D.
Cited in: 8 Publications (2006–2020)
Related Software: MSOAR; PSI-BLAST; BLAST; eggNOG; Proteinortho; PHYLIP; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Statistics (62-XX)

Kalign

Software Authors:   T. Lassmann, O. Frings, E. Sonnhammer
Cited in: 11 Publications (2011–2019)
Related Software: MUSCLE; ClustalW; T-coffee; MAFFT; ProbCons; Balibase; …
Main Fields: General and overarching topics; collections (00-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

ForceAtlas2

Software Authors:   Jacomy, M.; Venturini, T.; Heymann, S.; Bastian, M.
Cited in: 12 Publications (2017–2022)
Related Software: Gephi; GitHub; Supracentrality; CHAMP; GenLouvain; UMAP; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

GenABEL

Software Authors:   Aulchenko, Y. S., Ripke, S., Isaacs, A.; van Duijn, C. M
Cited in: 6 Publications (2013–2017)
Related Software: R; ProbABEL; Bioconductor; PLINK; igraph; Postgwas; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)

GeneMANIA

Software Authors:   Mostafavi, S., Ray, D., Warde-Farley, D., Grouios, C., Morris, Q.
Cited in: 9 Publications (2012–2021)
Related Software: Cytoscape; STRING; BioGRID; SHOGUN; BLAST; PSI-BLAST; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

TETRA

Software Authors:   Teeling H, Waldmann J, Lombardot T, Bauer M, Glöckner FO
Cited in: 2 Publications (2011–2020)
Related Software: MEGAN; TACOA; BLAST; PSI-BLAST; DOTUR; Pfam; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

ABCtoolbox

Software Authors:   Daniel Wegmann, Christoph Leuenberger, Samuel Neuenschwander, Laurent Excoffier
Cited in: 7 Publications (2012–2020)
Related Software: abctools; PopABC; abc; REJECTOR; msBayes; Serial SimCoal; …
Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX); Statistics (62-XX)

BEDTools

Software Authors:   Quinlan AR, Hall IM
Cited in: 7 Publications (2012–2019)
Related Software: R; Soap; IGV; FastQC; Samtools; edgeR; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Computer science (68-XX)

GEOquery

Software Authors:   Sean D, Meltzer PS
Cited in: 7 Publications (2016–2022)
Related Software: R; Bioconductor; shiny; WEKA; AdaPT; adaptMT; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Computer science (68-XX)

MAMMOTH

Software Authors:   Ortiz, A.R.; Strauss, C.E.M.; Olmea, O.
Cited in: 8 Publications (2008–2017)
Related Software: TM-align; BLAST; PSI-BLAST; DIAL; Qhull; ConSeq; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

qvalue

Software Authors:   John D. Storey, Andrew J. Bass, Alan Dabney, David Robinson
Cited in: 9 Publications (2008–2022)
Related Software: R; multtest; GitHub; DeepPINK; fdrtool; Phyloseq; …
Main Fields: Harmonic analysis on Euclidean spaces (42-XX); Statistics (62-XX); Operations research, mathematical programming (90-XX)

PathBLAST

Software Authors:   Kelley, B. P., Yuan, B., Lewitter, F., Sharan, R., Stockwell, B. R., Ideker T
Cited in: 6 Publications (2011–2015)
Related Software: KEGG; BLAST; PSI-BLAST; ClustalW; MAVisto; FANMOD; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Computer science (68-XX)

plsgenomics

Software Authors:   Boulesteix AL, Lambert-Lacroix S, Peyre J, Strimmer K
Cited in: 8 Publications (2013–2022)
Related Software: R; mclust; glmnet; MASS (R); rrcov; ROBPCA; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

cmenet

Software Authors:   Simon Mak, C. F. Jeff Wu
Cited in: 7 Publications (2018–2020)
Related Software: sparsenet; R; L0Learn; foba; rcdk; ElemStatLearn; …
Main Fields: Combinatorics (05-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

varSelRF

Software Authors:   Ramon Diaz-Uriarte
Cited in: 2 Publications (2009)
Related Software: R; GeneSrF; randomForest; Boruta; FSelector; mlbench; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

FindPeaks

Software Authors:   Fejes AP, Robertson G, Bilenky M, et al.
Cited in: 3 Publications (2012–2013)
Related Software: BayesPeak; KEGG; DEGseq; edgeR; R; TileMap; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

GlobPlot

Software Authors:   Rune Linding, Robert B. Russell, Victor Neduva and Toby J. Gibson
Cited in: 4 Publications (2008–2019)
Related Software: IUPred; RONN; FoldIndex; FoldUnfold; DISOPRED; ELM; …
Main Fields: Mathematical logic and foundations (03-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

MSOAR

Software Authors:   Fu, Z., Chen, X., Vacic, V., Nan, P., Zhong, Y., Jiang, T.; Shi, G., Zhang, L.
Cited in: 4 Publications (2013–2020)
Related Software: OrthoMCL; GASTS; MrBayes; BIONJ; PHYLIP; PSI-BLAST; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Computer science (68-XX)

Blast2GO

Software Authors:   Conesa, A., Götz, S., García-Gómez, J.M., Terol, J., Talón, M., Robles, M.
Cited in: 2 Publications (2019–2020)
Related Software: DAVID; Pfam; KEGG; MODELLER; InterProScan; I-TASSER; …
Main Fields: General and overarching topics; collections (00-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

CloudBurst

Software Authors:   Michael C. Schatz
Cited in: 2 Publications (2013–2018)
Related Software: Soap; MrsRF; MapReduce; BWA; ZOOM; Crossbow; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

Expression Profiler

Software Authors:   Jaak Vilo, Misha Kapushesky, Patrick Kemmeren, Ugis Sarkans, Alvis Brazma
Cited in: 1 Publication (2003)
Related Software: Bioconductor; Taverna; R; Matlab; Globus Toolkit; ASKALON; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

iBAG

Software Authors:   Wang, W., Baladandayuthapani, V., Morris, J. S., Broom, B. M., Manyam, G. Do, K.-A.
Cited in: 6 Publications (2015–2021)
Related Software: TCGA-assembler; PenPC; XMRF; glasso; GISTIC2.0; GTM; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

PLASQ

Software Authors:   Laframboise, Thomas; Harrington, David; Weir, Barbara A.
Cited in: 5 Publications (2007–2011)
Related Software: CARAT; R; PICNIC; BRLMM; oligo; GenoSNP; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

ARIA

Software Authors:   Linge, J.P., Habeck, M., Rieping, W., Nilges, M.
Cited in: 4 Publications (2013–2018)
Related Software: CNS; Xplor-NIH; CHARMM; CYANA; iBP; TM-align; …
Main Fields: Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

Circos

Software Authors:   Krzywinski, M., Schein, J., Birol, I., Connors, J., Gascoyne, R., Horsman, D., Jones, S.J., Marra, M.A.
Cited in: 3 Publications (2018–2021)
Related Software: Vega; Polaris; Hackage; Seaborn; ggplot2; OGDF; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

GASTS

Software Authors:   Xu, A., Moret, B.
Cited in: 4 Publications (2013–2019)
Related Software: MSOAR; OrthoMCL; FastTree; GRAPPA; RAxML; Mauve; …
Main Fields: General and overarching topics; collections (00-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

GSPPCA

Software Authors:   Bouveyron, Charles; Latouche, Pierre; Mattei, Pierre-Alexandre
Cited in: 5 Publications (2017–2020)
Related Software: msda; PMA; Bessel; penalizedLDA; GitHub; PCANet; …
Main Fields: Statistics (62-XX)

IntelliGEN

Software Authors:   Kochut, Krys; Arnold, Jonathan; Sheth, Amit; Miller, John; Kraemer, Eileen; Arpinar, Budak; Cardoso, Jorge
Cited in: 4 Publications (2003–2012)
Related Software: Woflan; Virtual Cell; JigCell; YSMP; MEG; STOCKS; …
Main Fields: Computer science (68-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

LPMode

Software Authors:   Mukhopadhyay, Subhadeep
Cited in: 5 Publications (2017–2022)
Related Software: R; TOHM; reldist; LPsmooth; Algorithm 457; bootstrap; …
Main Fields: Statistics (62-XX); Information and communication theory, circuits (94-XX)

REDfly

Software Authors:   Halfon M, Gallo S, Bergman C
Cited in: 2 Publications (2019–2020)
Related Software: R; GitHub; expansion-network; MaBoSS; Python; Ginsim; …
Main Fields: Biology and other natural sciences (92-XX)

XMRF

Software Authors:   Ying-Wooi Wan, Genevera I. Allen, Yulia Baker, Eunho Yang, Pradeep Ravikumar, Zhandong Liu
Cited in: 4 Publications (2018–2021)
Related Software: glasso; huge; R; stringr; gtools; Python; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

BioGAP

Software Authors:   Attila Egry-Nagy; Andrew Francis; Volker Gebhardt
Cited in: 4 Publications (2014–2019)
Related Software: Mauve; GAP; GitHub; VIZ; TikZ; Graphviz
Main Fields: Combinatorics (05-XX); Order, lattices, ordered algebraic structures (06-XX); Group theory and generalizations (20-XX)

CONFAC

Software Authors:   Suresh Karanam, Carlos S. Moreno
Cited in: 1 Publication (2009)
Related Software: CGHMultiArray; AS 62; ArrayExpress; JASPAR; rVISTA; AS 159
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

DINGO

Software Authors:   Ha MJ, Baladandayuthapani V, Do K-A
Cited in: 3 Publications (2019–2021)
Related Software: glasso; ARACNE; DEseq; GeNGe; SynTReN; GeneNetWeaver; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

GenePattern

Software Authors:   Michael Reich, Ted Liefeld, Joshua Gould, Jim Lerner, Pablo Tamayo, Jill P Mesirov
Cited in: 1 Publication (2016)
Related Software: R; IntelliGO; FUNC; Aber-OWL; Ontobee; PlantTFDB; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

MetaSim

Software Authors:   Richter, D.C.; Ott, F.; Auch, A.F.; Schmid, R.; Huson, D.H.
Cited in: 2 Publications (2017–2018)
Related Software: ONE; BLAST; PSI-BLAST; MEGAN; Pfam; MetaCluster; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

Q-SiteFinder

Software Authors:   Alasdair T. R. Laurie, Richard M. Jackson
Cited in: 2 Publications (2014)
Related Software: LINCS; Gromacs; MrBayes; SETTLE; PyMOL; AutoDock Vina; …
Main Fields: Biology and other natural sciences (92-XX)

sparsebn

Software Authors:   Bryon Aragam, Jiaying Gu, Qing Zhou
Cited in: 2 Publications (2021–2022)
Related Software: bnlearn; R; igraph; TETRAD; BayesianGLasso; BigQuic; …
Main Fields: Statistics (62-XX); Computer science (68-XX)

UCSC genome browser

Software Authors:   Zweig AS, Karolchik D, Kuhn RM et al
Cited in: 3 Publications (2002–2017)
Related Software: ClustalW; MrBayes; GENCODE; BLASTZ; OXBench; PatternHunter; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

VirtualLeaf

Software Authors:   Merks, R., Guravage, M., Inzé, D., Beemster, G
Cited in: 3 Publications (2015–2019)
Related Software: PhysiCell; CellSys; Microvessel Chaste; EmbryoMaker; CompuCell3D; Morpheus; …
Main Fields: Biology and other natural sciences (92-XX)

AFLOW-SYM

Software Authors:   Hicks, David; Oses, Corey; Gossett, Eric; Gomez, Geena; Taylor, Richard H.; Toher, Cormac; Mehl, Michael J.; Levy, Ohad; Curtarolo, Stefano
Cited in: 3 Publications (2018–2020)
Related Software: Spglib; PersistenceImages; PLATON; Phonopy; AFLUX; AFLOW; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Statistical mechanics, structure of matter (82-XX)

BayCount

Software Authors:   Xie, Fangzheng; Zhou, Mingyuan; Xu, Yanxun
Cited in: 3 Publications (2018–2021)
Related Software: R; PyClone; THetA; PhyloWGS; GitHub; PairClone; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

CLARK

Software Authors:   Ounit, R.; Wanamaker, S.; Close, T.J.; Lonardi, S.
Cited in: 3 Publications (2017–2022)
Related Software: MetaProb; SpEED; PatternHunter; SHRiMP; GTDB-Tk; CheckM; …
Main Fields: Biology and other natural sciences (92-XX)

CRYSTALP2

Software Authors:   Lukasz Kurgan, Ali A Razib, Sara Aghakhani, Scott Dick, Marcin Mizianty, Samad Jahandideh
Cited in: 3 Publications (2011–2016)
Related Software: ParCrys; Cd-hit; iLoc-Plant; NR-2L; RSARF; AFP-Pred; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

gfpop

Software Authors:   Vincent Runge, Toby Dylan Hocking, Gaetano Romano, Fatemeh Afghah, Paul Fearnhead, Guillem Rigaill
Cited in: 1 Publication (2020)
Related Software: R; PeakSegOptimal; wbs; PeakSegDisk; isotone; PeakSeg; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

IGV

Software Authors:   Thorvaldsdóttir H, Robinson JT, Mesirov JP
Cited in: 3 Publications (2016–2018)
Related Software: BEDTools; R; FastQC; Samtools; FIMO; BioMart; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

netgwas

Software Authors:   Pariya Behrouzi, Ernst C. Wit
Cited in: 1 Publication (2019)
Related Software: igraph; Matrix; R; pergola; R/qtl; MASS (R); …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

ParCrys

Software Authors:   Ian M. Overton, Gianandrea Padovani, Mark A. Girolami, Geoffrey J. Barton
Cited in: 2 Publications (2012–2016)
Related Software: CRYSTALP2; iLoc-Plant; NR-2L; RSARF; AFP-Pred; iLoc-Euk; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

Profunc

Software Authors:   R. A. Laskowski, J. D. Watson, J. M. Thornton
Cited in: 1 Publication (2015)
Related Software: I-TASSER; SW1PerS; UProC; PBEQ-Solver; DOMpro; darch; …
Main Fields: Biology and other natural sciences (92-XX)

Qxpak

Software Authors:   Miguel Pérez-Enciso; Ignacy Misztal
Cited in: 1 Publication (2007)
Related Software: ProbABEL; Eigenstrat; IMPUTE; GenABEL; PLINK; QTL Cartographer; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX)

Rnaz

Software Authors:   Gruber AR, Findeiss S, Washietl S, Hofacker IL, Stadler PF
Cited in: 2 Publications (2015–2017)
Related Software: Bioconductor; Rfam; R; ViennaRNA; TopHat; KEGG; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

SpectralNET

Software Authors:   Forman JJ1, Clemons PA, Schreiber SL, Haggarty SJ.
Cited in: 2 Publications (2011)
Related Software: Graph Investigator; StOCNET; LAPACK; k-means++; GeneRAGE; ProClust; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

SplitMEM

Software Authors:   S. Marcus, H. Lee, M. C. Schatz
Cited in: 3 Publications (2017–2022)
Related Software: tbwt; BWA; Rainbowfish; deBGA; vg; HISAT
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

SRA

Software Authors:   National Center for Biotechnology Information, U.S. National Library of Medicine
Cited in: 3 Publications (2011–2014)
Related Software: EDAseq; changepoint; edgeR; Bioconductor; R; CRAN
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

XCVMTest

Software Authors:   YuanHai Xiao; Alexander Gordon and Andrei Yakovlev
Cited in: 2 Publications (2014–2017)
Related Software: R; Quicksort; ElemStatLearn; UCI-ml
Main Fields: Statistics (62-XX); Computer science (68-XX)

adjclust

Software Authors:   Christophe Ambroise, Shubham Chaturvedi, Alia Dehman, Michel Koskas, Pierre Neuvial, Guillem Rigaill, Nathalie Vialaneix
Cited in: 1 Publication (2021)
Related Software: CONISS; ClustGeo; capushe; Matrix; HiTC; snpStats; …
Main Fields: Statistics (62-XX)

AutoFACT

Software Authors:   Koski, L.B., Gray, M.W., Lang, B.F., Burger, G.
Cited in: 1 Publication (2007)
Related Software: Pfam; BLAST; Blast2GO; PSI-BLAST; Profunc; MUSCLE; …
Main Fields: Biology and other natural sciences (92-XX)

BEDOPS

Software Authors:   Shane Neph, Alex P. Reynolds, M. Scott Kuehn, John A. Stamatoyannopoulos
Cited in: 2 Publications (2016–2022)
Related Software: Scala; Galaxy; ROAST; featureCounts; Rsubread; recount; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

BioGrapher

Software Authors:   Viswanathan, Rama; Liang, Sijia; Yang, Yang; Jungck, John R.
Cited in: 2 Publications (2015–2016)
Related Software: JavaBENZER; Excel; VBA; Visual Basic; Graphviz
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

BisoGenet

Software Authors:   Martin, A., Ochagavia, M. E., Rabasa, L. C., Miranda, J., Fernandez‐de Cossio, J., Bringas, R.
Cited in: 1 Publication (2018)
Related Software:
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

clustRviz

Software Authors:   Weylandt, Michael; Nagorski, John; Allen, Genevera I.
Cited in: 2 Publications (2020–2021)
Related Software: clusterpath; ConvexLAR; t-SNE; k-means++; DEseq
Main Fields: Statistics (62-XX); Computer science (68-XX)

ConFunc

Software Authors:   Mark N. Wass, Michael J. E. Sternberg
Cited in: 1 Publication (2010)
Related Software: ConSeq; MAMMOTH; PSLpred; iTOL; TM-align; BLAST; …
Main Fields: Biology and other natural sciences (92-XX)

CoreSNP

Software Authors:   Guzzi, Pietro Hiram; Agapito, Giuseppe; Cannataro, Mario
Cited in: 2 Publications (2014–2019)
Related Software: Cloud4SNP; MapReduce
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

deBWT

Software Authors:   Liu, B.; Zhu, D.; Wang, Y.
Cited in: 2 Publications (2017–2020)
Related Software:
Main Fields: Computer science (68-XX)

GALGO

Software Authors:   Trevino V, Falciani F
Cited in: 0 Publications
Related Software: R; rJava; glmpath; bestglm; MuMIn; Glmulti; …
Main Fields:

Genoviz

Software Authors:   Helt GA, Nicol JW, Erwin E, Blossom E, Blanchard SG, Chervitz SA et al
Cited in: 1 Publication (2016)
Related Software: Galaxy; ROAST; featureCounts; Rsubread; recount; PROPER; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

Gviz

Software Authors:   Florian Hahne, Robert Ivanek
Cited in: 2 Publications (2016–2021)
Related Software: STAR; BSgenome; TopHat; FastQC; KEGG; edgeR; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

hidetify

Software Authors:   Barry, Amadou; Bhagwat, Nikhil; Misic, Bratislav; Poline, Jean-Baptiste; Greenwood, Celia M. T.
Cited in: 2 Publications (2022)
Related Software: R; SAS/STAT; copula; expectgee; copula; geepack; …
Main Fields: Statistics (62-XX)

HTSanalyzeR

Software Authors:   Xin Wang, Camille Terfve, John C. Rose, Florian Markowetz
Cited in: 1 Publication (2022)
Related Software: Dendrix; ModuleDiscoverer; SigMod; DOMINO; NetSig; DIAMOnD; …
Main Fields: Biology and other natural sciences (92-XX)

i-ADHoRe

Software Authors:   Proost, S., Fostier, J., De Witte, D., Dhoedt, B., Demeester, P., Van de Peer, Y., Vandepoele, K.
Cited in: 2 Publications (2019)
Related Software: CYNTENATOR; Sibelia; CAMSA; hybridSPAdes; GTED; HINGE; …
Main Fields: General and overarching topics; collections (00-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

INFUSE

Software Authors:   Dunemann, Oliver; Geist, Ingolf; Jesse, Roland; Sattler, Kai-Uwe; Stephanik, Andreas
Cited in: 2 Publications (2002–2003)
Related Software:
Main Fields: Computer science (68-XX)

LUMPY

Software Authors:   Ryan M. Layer, Colby Chiang, Aaron R. Quinlan, Ira M. Hall
Cited in: 1 Publication (2017)
Related Software: Pindel; Delly; wgsim; Samtools; YAHA; GitHub; …
Main Fields: Biology and other natural sciences (92-XX)

MUMmer4

Software Authors:   Marçais, G., Delcher, A.L., et al.
Cited in: 2 Publications (2020–2022)
Related Software: essaMEM; Edlib; Winnowing; lra; CoCoNUT; Minimap2; …
Main Fields: Biology and other natural sciences (92-XX)

ntCard

Software Authors:   Mohamadi, H., Khan, H., Birol, I.
Cited in: 2 Publications (2019–2020)
Related Software: TTA Lynx; CodonW; CodonPhyML; ACUA; PAML; CodonTest; …
Main Fields: Biology and other natural sciences (92-XX)

pcaReduce

Software Authors:   Justina Zurauskiene. Christopher Yau
Cited in: 2 Publications (2017–2022)
Related Software: SC3; sparcl; DIMM-SC; umap; pdfCluster; PRMLT; …
Main Fields: Statistics (62-XX); Computer science (68-XX)

phyloscanner

Software Authors:   Wymant C, Hall M, Ratmann O, Bonsall D, Golubchik T de Cesare M, Gall A, Cornelissen M, Fraser C
Cited in: 2 Publications (2018–2022)
Related Software: BoundedCoalescent; phylodyn; SimPhy; Rcpp; ape; R; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Statistics (62-XX)

QAPgrid

Software Authors:   Inostroza-Ponta M, Berretta R, Moscato P
Cited in: 2 Publications (2017–2021)
Related Software: HAS-QAP; Wumpus; QAPLIB; TreeWiz; starBase; LocARNAscan; …
Main Fields: General and overarching topics; collections (00-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

saa

Software Authors:   Zhao, Sihai Dave
Cited in: 2 Publications (2017–2021)
Related Software: TULIP; ranger; limma; glmnet; Bioconductor; LDAK; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

sansSouci

Software Authors:   Durand, Guillermo; Blanchard, Gilles; Neuvial, Pierre; Roquain, Etienne
Cited in: 2 Publications (2020)
Related Software: GitHub; R
Main Fields: Statistics (62-XX)

stAIcalc

Software Authors:   Renana Sabi, Renana Volvovitch Daniel, Tamir Tuller
Cited in: 2 Publications (2020–2022)
Related Software: TTA Lynx; CodonW; CodonPhyML; ntCard; ACUA; PAML; …
Main Fields: Biology and other natural sciences (92-XX)

Starr

Software Authors:   Benedikt Zacher, Achim Tresch
Cited in: 0 Publications
Related Software: Bioconductor; Ringo; R
Main Fields:

TESD

Software Authors:   Grégory Deceliere, Yann Letrillard, Sandrine Charles, Christian Biémont
Cited in: 1 Publication (2008)
Related Software:
Main Fields: Probability theory and stochastic processes (60-XX); Biology and other natural sciences (92-XX)

TOUCAN

Software Authors:   Aerts, S., Van Loo, P., Thijs, G., Maye r, H., de Martin, R., Moreau, Y., De Moor, B.
Cited in: 1 Publication (2007)
Related Software: EMBOSS; SMART; DAMBE; AMADA; YACOP; GOtcha; …
Main Fields: Biology and other natural sciences (92-XX)

VATRAM

Software Authors:   Jens Quedenfeld, Sven Rahmann
Cited in: 1 Publication (2017)
Related Software:
Main Fields: Biology and other natural sciences (92-XX)

wCluto

Software Authors:   Matthew D. Rasmussen; Mukund S. Deshpande; George Karypis; James Johnson; John A. Crow; Ernest F. Retzel
Cited in: 0 Publications
Related Software: WordNet; eXist; Jalview; PROSITE; MUSCLE; ClustalW
Main Fields:

abSNP

Software Authors:   Mao, Shunfu; Mohajer, Soheil; Ramachandran, Kannan; Tse, David; Kannan, Sreeram
Cited in: 1 Publication (2017)
Related Software: Sniper; GlfMultiples; RNASeqReadSimulator; SNVMix; VarScan; RSEM; …
Main Fields: Biology and other natural sciences (92-XX)

Aevol

Software Authors:   Bérénice Batut, David P Parsons, Stephan Fischer, Guillaume Beslon, Carole Knibbe
Cited in: 1 Publication (2016)
Related Software: INDELible; ALF; SimPhy
Main Fields: Biology and other natural sciences (92-XX)

aPCoA

Software Authors:   Yushu Shi
Cited in: 0 Publications
Related Software: mvabund; shiny; R
Main Fields:

ArchiLD

Software Authors:   Melchiotti, R.; Rötzschke, O.; Poidinger, M.
Cited in: 1 Publication (2020)
Related Software: MetNetGE; WebMap
Main Fields: Statistical mechanics, structure of matter (82-XX)