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Found 730 Software Packages (Results 1–100)

LMI toolbox

Software Authors:   MathWorks; Gahinet, P.; Nemirovskii, A.; Laub, A.J.; Chilali, M.
Referenced in: 1,451 Publications (1995–2022)
Related Software: Matlab; Control System Toolbox; SeDuMi; YALMIP; Mu Analysis and Synthesis Toolbox; SDPT3; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Ordinary differential equations (34-XX); Operations research, mathematical programming (90-XX)

KELLEY

Software Authors:   Kelley, C.T.
Referenced in: 642 Publications (1995–2022)
Related Software: minpack; Matlab; L-BFGS; IMFIL; NITSOL; DFO; …
Main Fields: Partial differential equations (35-XX); Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX)

System Identification Toolbox

Software Authors:   Schön, Thomas B; Wills, Adrian; Ninness, Brett; Lennart Ljung
Referenced in: 173 Publications (1990–2022)
Related Software: Matlab; Wiener-Hammerstein Benchmark; CONTSID; CAPTAIN; PRMLT; astsa; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

libMesh

Software Authors:   B. S. Kirk, J. W. Peterson, R. H. Stogner, and G. F. Carey
Referenced in: 146 Publications (2004–2022)
Related Software: PETSc; deal.ii; FEniCS; Trilinos; Gmsh; FreeFem++; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

MultRoot

Software Authors:   Zheng, Zhonggang
Referenced in: 100 Publications (2003–2022)
Related Software: Matlab; PHCpack; ApaTools; mctoolbox; Maple; GPGCD; …
Main Fields: Field theory and polynomials (12-XX); Commutative algebra (13-XX); Algebraic geometry (14-XX)

HMQV

Software Authors:   Krawczyk, Hugo
Referenced in: 90 Publications (2001–2022)
Related Software: NAXOS; GitHub; liboqs; Reveal; KEM-DEM; Curve25519; …
Main Fields: Number theory (11-XX); Dynamical systems and ergodic theory (37-XX); Computer science (68-XX)

Paramils

Software Authors:   Hutter, F.; Hoos, H.H.; Leyton-Brown, K.; Stuetzle, T.
Referenced in: 74 Publications (2009–2022)
Related Software: SMAC; irace; SATzilla; SATenstein; MiniSat; SPOT; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

Reduze

Software Authors:   Andreas von Manteuffel; Cedric Studerus
Referenced in: 80 Publications (2010–2022)
Related Software: LiteRed; FIRE; FORM; AIR; FIRE5; SecDec; …
Main Fields: Number theory (11-XX); Algebraic geometry (14-XX); Computer science (68-XX)

BoosTexter

Software Authors:   Schapire, Robert E.; Singer, Yoram
Referenced in: 62 Publications (1999–2022)
Related Software: ML-KNN; MULAN; AdaBoost.MH; C4.5; UCI-ml; LIBSVM; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

kappalab

Software Authors:   Grabisch, Michel; Kojadinovic, Ivan; Meyer, Patrick
Referenced in: 52 Publications (2007–2022)
Related Software: R; M-MACBETH; VisualUTA; UTA Plus; quadprog; Knapsack; …
Main Fields: Measure and integration (28-XX); Statistics (62-XX); Computer science (68-XX)

GGobi

Software Authors:   Debby Swayne; Di Cook; Duncan Temple Lang; Andreas Buja
Referenced in: 34 Publications (2003–2022)
Related Software: R; XGobi; rggobi; ggplot2; RGtk2; iplots; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

XM2VTSDB

Software Authors:   Messer, K., Mastas, J., Kittler, J., Luettin, J., Maitre, G.
Referenced in: 22 Publications (2000–2017)
Related Software: FERET; AR face; CMU PIE; LFW; BioID Face Database; Multi-PIE; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

SimEstFBM

Software Authors:   Jean-Francois Coeurjolly
Referenced in: 39 Publications (2001–2022)
Related Software: longmemo; wmtsa; R; Matlab; S-PLUS; DLMF; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

CONTSID

Software Authors:   Garnier, H., Gilson, M., Bastogne, T., Mensler, M.
Referenced in: 38 Publications (2003–2022)
Related Software: CAPTAIN; System Identification Toolbox; Matlab; Wiener-Hammerstein Benchmark; IPsolve; DLMF; …
Main Fields: Real functions (26-XX); Calculus of variations and optimal control; optimization (49-XX); Computer science (68-XX)

PROSITE

Software Authors:   Sigrist, C.J.A., Cerutti, L., Hulo, N., Gattiker, A., Falquet, L., Pagni, M., Bairoch, A., Bucher, P.
Referenced in: 19 Publications (2004–2022)
Related Software: Pfam; BLAST; PSI-BLAST; ClustalW; UniProt; KEGG; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

CAPTAIN

Software Authors:   Peter Young
Referenced in: 36 Publications (2006–2022)
Related Software: CONTSID; Matlab; System Identification Toolbox; STAMP; ECOTOOL; SSpace; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Mechanics of particles and systems (70-XX)

Daisy

Software Authors:   B. De Moor, P. De Gersem, B. De Schutter, W. Favoreel
Referenced in: 32 Publications (2001–2022)
Related Software: FastICA; ICALAB; SLRA; Wiener-Hammerstein Benchmark; System Identification Toolbox; Matlab; …
Main Fields: Numerical analysis (65-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

Wiener-Hammerstein Benchmark

Software Authors:   J. Schoukens, J. Suykens, L. Ljung
Referenced in: 36 Publications (2010–2021)
Related Software: System Identification Toolbox; SparsePOP; SeDuMi; Daisy; CONTSID; Matlab; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Computer science (68-XX)

polyquad

Software Authors:   Witherden, F.D.; Vincent, P.E.
Referenced in: 31 Publications (2015–2022)
Related Software: Gmsh; Trilinos; quadpy; GitHub; MUMPS; UMFPACK; …
Main Fields: Partial differential equations (35-XX); Approximations and expansions (41-XX); Numerical analysis (65-XX)

SINDy

Software Authors:   Loiseau, Jean-Christophe; Brunton, Steven L.
Referenced in: 31 Publications (2017–2022)
Related Software: redbKIT; Nek5000; PDE-Net; VAMPnets; Adam; Loewner; …
Main Fields: Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX); Computer science (68-XX)

MuJoCo

Software Authors:   E. Todorov, T. Erez, Y. Tassa
Referenced in: 23 Publications (2016–2022)
Related Software: OpenAI Gym; TensorFlow; Adam; PyTorch; GitHub; Python; …
Main Fields: Computer science (68-XX); Mechanics of particles and systems (70-XX); Operations research, mathematical programming (90-XX)

CasANOVA

Software Authors:   Bondell, H. D.; Reich, B. J.
Referenced in: 27 Publications (2009–2021)
Related Software: R; gvcm.cat; BradleyTerry2; Fahrmeir; glmnet; OSCAR; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Operations research, mathematical programming (90-XX)

pLoc-mPlant

Software Authors:   Cheng, X.; Xiao, X.; Chou, K.-C.
Referenced in: 27 Publications (2017–2019)
Related Software: pLoc-mEuk; pLoc-mVirus; pLoc-mAnimal; Pse-in-One; iRNA-PseColl; pLoc-mGneg; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

NOEKEON

Software Authors:   Daemen, J., Peeters, M., Assche, G.V., Rijmen, V.
Referenced in: 26 Publications (2002–2022)
Related Software: PRESENT; SIMON; LED; PRINCE; SIMECK; SPECK; …
Main Fields: Order, lattices, ordered algebraic structures (06-XX); Computer science (68-XX); Information and communication theory, circuits (94-XX)

WGCNA

Software Authors:   Peter Langfelder; Steve Horvath; Chaochao Cai, Jun Dong, Jeremy Miller, Lin Song, Andy Yip, Bin Zhang
Referenced in: 20 Publications (2013–2021)
Related Software: R; glasso; KEGG; igraph; dynamicTreeCut; ggplot2; …
Main Fields: Combinatorics (05-XX); Linear and multilinear algebra; matrix theory (15-XX); Partial differential equations (35-XX)

CANONIK

Software Authors:   Rand, D.W.
Referenced in: 24 Publications (1987–2018)
Related Software: SPLIT; SYMMGRP.MAX; diffgrob2; ELIAS; Maple; pLoc-mEuk; …
Main Fields: Nonassociative rings and algebras (17-XX); Ordinary differential equations (34-XX); Partial differential equations (35-XX)

iNuc-PhysChem

Software Authors:   Chen, W.; Lin, H.; Feng, P. M.; Ding, C.; Zuo, Y. C.; Chou, K. C.
Referenced in: 24 Publications (2013–2019)
Related Software: iRSpot-PseDNC; iSNO-PseAAC; iRSpot-TNCPseAAC; propy; Cell-PLoc; iNuc-PseKNC; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

ESIGN

Software Authors:   Fujioka, Atsushi; Okamoto, Tatsuaki; Miyaguchi, Shoji
Referenced in: 23 Publications (1991–2020)
Related Software: HAVAL
Main Fields: History and biography (01-XX); Number theory (11-XX); Numerical analysis (65-XX)

iDNA6mA-PseKNC

Software Authors:   Feng, P.; Yang, H.; Ding, H.; Lin, H.; Chen, W.; Chou, K.-C.
Referenced in: 21 Publications (2018–2019)
Related Software: iRNA-PseColl; iPromoter-2L; iRSpot-EL; pLoc-mEuk; pLoc-mAnimal; 2L-piRNA; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

iMethyl-PseAAC

Software Authors:   Qiu, W. R.; Xiao, X.; Lin, W. Z.
Referenced in: 21 Publications (2014–2019)
Related Software: iRSpot-PseDNC; Pse-in-One; iPTM-mLys; iHyd-PseAAC; pSuc-Lys; iRNA-PseColl; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

ELIZA

Software Authors:   Weizenbaum, Joseph
Referenced in: 8 Publications (1972–2021)
Related Software: sCASP; SQuAD; StanfordCoreNLP; Clingo; WordNet; CLARION; …
Main Fields: History and biography (01-XX); Computer science (68-XX)

CF-GGA

Software Authors:   Brown, Evelyn C.; Sumichrast, Robert T.
Referenced in: 18 Publications (2001–2018)
Related Software: Genocop; Bison; CPLEX; TSPLIB
Main Fields: Computer science (68-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

sbtoolbox

Software Authors:   Henning Schmidt; Mats Jirstrand
Referenced in: 12 Publications (2009–2019)
Related Software: Matlab; SBML-SAT; libSBML; Sbmltoolbox; SymPy; Python; …
Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX); Calculus of variations and optimal control; optimization (49-XX)

FSAIPACK

Software Authors:   C. Janna, M. Ferronato, F. Sartoretto, G. Gambolati
Referenced in: 17 Publications (2015–2022)
Related Software: SparseMatrix; BFSAI-IC; ILUT; BootCMatch; PCBDDC; ParaSails; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Numerical analysis (65-XX); Computer science (68-XX)

Mauve

Software Authors:   Darling AC, Mau B, Blattner FR, Perna NT
Referenced in: 11 Publications (2008–2022)
Related Software: OXBench; LAGAN; ClustalW; T-coffee; BLASTZ; BLAT; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Statistics (62-XX)

PennCNV

Software Authors:   Wang, K., Li, M., Hadley, D., et al.
Referenced in: 13 Publications (2009–2018)
Related Software: BioHMM; CARAT; BRLMM; R; CNVassoc; VanillaICE; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

RSIR

Software Authors:   Zhong, W.; Zeng, P.; Ma, P.; Liu, J. S.; Zhu, Y.
Referenced in: 17 Publications (2008–2022)
Related Software: edrGraphicalTools; R; ElemStatLearn; fda (R); variables; VSURF; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

eXist

Software Authors:   Meier, Wolfgang
Referenced in: 7 Publications (2003–2017)
Related Software: XPath; XQuery; Globus Toolkit; TIMBER; UniProt; BLAST; …
Main Fields: Computer science (68-XX); Quantum theory (81-XX); Biology and other natural sciences (92-XX)

iDNA-Prot

Software Authors:   Liu, B., Xu, J., Lan, X., Xu, R., Zhou, J., Wang, X., Chou, K.-C.
Referenced in: 16 Publications (2012–2019)
Related Software: iPPI-Esml; Pse-in-One; pSuc-Lys; AFP-Pred; iPro54-PseKNC; pLoc-mPlant; …
Main Fields: Combinatorics (05-XX); Measure and integration (28-XX); Statistics (62-XX)

iSS-PseDNC

Software Authors:   Chen, W.; Feng, P. M.; Lin, H.
Referenced in: 16 Publications (2014–2019)
Related Software: PseKNC; iRSpot-PseDNC; iCTX-Type; iRSpot-TNCPseAAC; iACP; pSuc-Lys; …
Main Fields: Partial differential equations (35-XX); Statistics (62-XX); Computer science (68-XX)

SMART

Software Authors:   Letunic, I., Copley, R.R., Schmidt, S., Ciccarelli, F.D., Doerks, T., Schultz, J., Ponting, C.P., Bork, P.
Referenced in: 7 Publications (2006–2019)
Related Software: Pfam; UniProt; PSI-BLAST; ClustalW; PROSITE; BLAST; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Computer science (68-XX)

emgr

Software Authors:   Christian Himpe
Referenced in: 12 Publications (2013–2022)
Related Software: Matlab; Octave; hapod; MATLAB ODE suite; MathEnergy; morgen; …
Main Fields: Dynamical systems and ergodic theory (37-XX); Approximations and expansions (41-XX); Numerical analysis (65-XX)

ESTIMA

Software Authors:   Jategaonkar, Ravindra; Thielecke, Frank
Referenced in: 15 Publications (1993–2010)
Related Software: R; MIM; TETRAD; polymake; AS 176; KernSmooth
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

iTIS-PseTNC

Software Authors:   Chen, W.; Feng, P. -M.; Deng, E. -Z.; Lin, H.; Chou, K. -C.
Referenced in: 15 Publications (2015–2019)
Related Software: iRSpot-PseDNC; iPro54-PseKNC; iAMP-2L; PseKNC; iNitro-Tyr; iCTX-Type; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

OrthoMCL

Software Authors:   Li, L., Stoeckert, C.J., Roos, D.
Referenced in: 8 Publications (2006–2020)
Related Software: MSOAR; BLAST; PSI-BLAST; eggNOG; Proteinortho; PHYLIP; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Statistics (62-XX)

Quat-2L

Software Authors:   Xiao, X.; Wang, P.; Chou, K. C.
Referenced in: 15 Publications (2010–2018)
Related Software: GPCR-GIA; Cell-PLoc; GPCR-CA; GPCR-2L; Plant-mPLoc; iLoc-Virus; …
Main Fields: Mathematical logic and foundations (03-XX); Statistics (62-XX); Computer science (68-XX)

RankGene

Software Authors:   Su, Y.; Murali, T. M.; Pavlovic, V.; Schaffer, M.; Kasif, S.
Referenced in: 13 Publications (2005–2022)
Related Software: lemma; Bioconductor; R; mixOmics; armada; sma; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

SEMINT

Software Authors:   Li, W.-S.; Clifton, C.
Referenced in: 9 Publications (2000–2009)
Related Software: WordNet; Etuner; AdaBoost.MH; JGraphT; Anchor-PROMPT; PROMPT; …
Main Fields: General algebraic systems (08-XX); Computer science (68-XX)

ASMOD

Software Authors:   Kavli, Tom
Referenced in: 14 Publications (1993–2008)
Related Software: ElemStatLearn; LOQO; ANFIS
Main Fields: Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX); Computer science (68-XX)

sampleSelection

Software Authors:   Arne Henningsen, Ott Toomet
Referenced in: 10 Publications (2008–2022)
Related Software: R; Stata; SemiParSampleSel; SAS; SemiParBIVProbit; Systemfit; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

SecretP

Software Authors:   Yu, L.; Guo, Y.; Li, Y.; Li, G.; Li, M.; Luo, J.; Xiong, W.; Qin, W.
Referenced in: 14 Publications (2010–2013)
Related Software: Cell-PLoc; Euk-mPLoc; iLoc-Virus; Plant-mPLoc; iLoc-Euk; GPCR-2L; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

GRESS

Software Authors:   Horwedel, Jim E.
Referenced in: 13 Publications (1991–2018)
Related Software: ADIFOR; ADOL-C; ADIC; PADRE2; TAF; Odyssee; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

Lord-Wingersky

Software Authors:   Huang, Sijia; Cai, Li
Referenced in: 13 Publications (1998–2021)
Related Software: flexMIRT; BayesDA; PROsetta; lordif; equate; mirt; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

COM-MAT-FAIL

Software Authors:   Oliver, J.; Dias, I.F.; Huespe, A.E.
Referenced in: 12 Publications (2014–2019)
Related Software:
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

MacSpin

Software Authors:   Donoho, A.W.; Donoho, D.L.; Gasko, M.
Referenced in: 9 Publications (1989–2006)
Related Software: LISP-STAT; R; ViSta; Mondrian; MANET; UsingR; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

QNet

Software Authors:   Banu Dost; Tomer Shlomi; Nitin Gupta; Eytan Ruppin; Vineet Bafna; Roded Sharan
Referenced in: 11 Publications (2008–2022)
Related Software: QPath; MetaCyc; CPLEX; SIMBio; GraMoFoNe; Kavosh; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Computer science (68-XX)

TETRA

Software Authors:   Teeling H, Waldmann J, Lombardot T, Bauer M, Glöckner FO
Referenced in: 2 Publications (2011–2020)
Related Software: MEGAN; TACOA; BLAST; PSI-BLAST; DOTUR; Pfam; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

ALADINS

Software Authors:   Veneziani, Alessandro; Villa, Umberto
Referenced in: 11 Publications (2013–2022)
Related Software: FEATFLOW; CSparse; FEniCS; MUMPS; LifeV; ParMETIS; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

I.P.P.

Software Authors:   –
Referenced in: 11 Publications (2003–2010)
Related Software: TDBS
Main Fields: Computer science (68-XX); Mechanics of deformable solids (74-XX); Operations research, mathematical programming (90-XX)

iEnhancer-EL

Software Authors:   Liu, B.; Li, K.; Huang, D.-S.; Chou, K.-C.
Referenced in: 11 Publications (2018–2019)
Related Software: pLoc-mGneg; iRO-3wPseKNC; iDNA6mA-PseKNC; iRNA-3typeA; iPromoter-2L; iRSpot-EL; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

NNSYSID

Software Authors:   Norgaard, M., Ravn, O., Hansen, L.K., & Poulsen, N.K.
Referenced in: 6 Publications (1997–2022)
Related Software: System Identification Toolbox; MemNet; Tensor2Tensor; longmemo; PRMLT; OP-ELM; …
Main Fields: Fluid mechanics (76-XX); Classical thermodynamics, heat transfer (80-XX); Quantum theory (81-XX)

TiGERS

Software Authors:   Birkett Huber; Rekha Thomas
Referenced in: 11 Publications (2000–2020)
Related Software: Gfan; Macaulay2; SINGULAR; MDSpackage; CaTS; Convex; …
Main Fields: Combinatorics (05-XX); Commutative algebra (13-XX); Algebraic geometry (14-XX)

AMIGO

Software Authors:   Eva Balsa-Canto; Julio R. Banga
Referenced in: 7 Publications (2015–2021)
Related Software: Data2Dynamics; PESTO; COPASI; R; pyPESTO; PEtab; …
Main Fields: Ordinary differential equations (34-XX); Numerical analysis (65-XX); Operations research, mathematical programming (90-XX)

ELPI

Software Authors:   Dunchev C, Guidi F, Coen CS, Tassi E
Referenced in: 10 Publications (2015–2021)
Related Software: Coq; Abella; Twelf; Agda; Teyjus; LCF; …
Main Fields: Mathematical logic and foundations (03-XX); Computer science (68-XX)

FitAR

Software Authors:   A.I. McLeod, Ying Zhang, Changjiang Xu
Referenced in: 8 Publications (2011–2022)
Related Software: R; fGarch; vars; TSA; ARbiascorrect; BootPR; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX)

iDHS-EL

Software Authors:   Liu, B.; Long, R.; Chou, K. -C.
Referenced in: 10 Publications (2016–2019)
Related Software: Pse-in-One; pSuc-Lys; Prnam-PC; iSuc-PseOpt; iEnhancer-2L; iRSpot-PseDNC; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

iMiRNA-PseDPC

Software Authors:   Liu, B.; Fang, L.; Liu, F.; Wang, X.; Chou, K. -C.
Referenced in: 10 Publications (2015–2019)
Related Software: Pse-in-One; PseKNC; iPPI-Esml; iAMP-2L; iDNA-Methyl; iPro54-PseKNC; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

SIES

Software Authors:   H. Wang
Referenced in: 10 Publications (2013–2021)
Related Software: GitHub
Main Fields: Partial differential equations (35-XX); Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX)

T-REX

Software Authors:   Boc, A., Diallo, A.B., Makarenkov, V.
Referenced in: 9 Publications (2006–2022)
Related Software: RIATA-HGT; SplitsTree; IcyTree; Dendroscope; ggplot2; Mesquite; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

CARMA

Software Authors:   Ding, Feng
Referenced in: 9 Publications (2011–2014)
Related Software:
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Systems theory; control (93-XX)

DRUtES

Software Authors:   Kuráž, Michal; Mayer, Petr; Lepš, Matěj; Trpkošová, Dagmar
Referenced in: 9 Publications (2010–2021)
Related Software: ROS3P; Adgfem; Anderson; BL2D-V2; HYDRUS
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

EASY - FIT

Software Authors:   Klaus Schittkowski
Referenced in: 9 Publications (1999–2010)
Related Software: PDEFIT; PCOMP; NL2SOL; Schittkowski; RODAS; omniORB; …
Main Fields: Partial differential equations (35-XX); Statistics (62-XX); Numerical analysis (65-XX)

Hybrid Stable Spline Toolbox

Software Authors:   Pillonetto, Gianluigi
Referenced in: 9 Publications (2016–2022)
Related Software: Matlab; PRMLT; GitHub; Adam; GPflow; TensorFlow; …
Main Fields: Partial differential equations (35-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

NR-2L

Software Authors:   Wang P, Xiao X, Chou KC
Referenced in: 9 Publications (2012–2018)
Related Software: Cell-PLoc; iLoc-Euk; iLoc-Virus; GPCR-2L; iLoc-Gpos; Plant-mPLoc; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

oligo

Software Authors:   Benilton Carvalho, Rafael Irizarry, Ben Bolstad, Vincent Carey, Wolfgang Huber, Harris Jaffee, Jim MacDonald, Matt Settles
Referenced in: 7 Publications (2007–2016)
Related Software: BRLMM; PLASQ; R; edgeR; CARAT; GenoSNP; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

PMLB

Software Authors:   Randal S. Olson, William La Cava, Patryk Orzechowski, Ryan J. Urbanowicz, Jason H. Moore
Referenced in: 8 Publications (2018–2022)
Related Software: Scikit; UCI-ml; PySAT; C4.5; GitHub; shap; …
Main Fields: Statistics (62-XX); Computer science (68-XX)

SPLIT

Software Authors:   Rand, D.W.; Winternitz, P.; Zassenhaus, Hans
Referenced in: 9 Publications (1987–2012)
Related Software: CANONIK; RADICAL; diffgrob2; SYMMGRP.MAX; LEVI; Maple
Main Fields: Nonassociative rings and algebras (17-XX); Topological groups, Lie groups (22-XX); Partial differential equations (35-XX)

TIGRESS

Software Authors:   Haury, A.C., Mordelet, F., Vera-Licona, P., Vert, J.P.
Referenced in: 9 Publications (2013–2019)
Related Software: SIRENE; ARACNE; glasso; JASPAR; BioGRID; glmnet; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

BayesPeak

Software Authors:   Cairns, Jonathan M.; Spyrou, Christiana; Stark, Rory; Smith, Mike L.; Lynch, Andy G.; Tavaré, Simon
Referenced in: 4 Publications (2012–2019)
Related Software: HPeak; FindPeaks; DEGseq; edgeR; R; deepTools2; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

EBSeq

Software Authors:   Leng N, Dawson JA, Thomson JA, Ruotti V, Rissman AI, Smits BM, Haag JD, Gould MN, Stewart RM, Kendziorski C
Referenced in: 8 Publications (2015–2021)
Related Software: edgeR; Bioconductor; DEseq; TopHat; BaySeq; DESeq2; …
Main Fields: General and overarching topics; collections (00-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

EXPANDER

Software Authors:   Shamir, R.; Maron-Katz, A.; Tanay, A.; Linhart, C.; Steinfeld, I.; Sharan, R.; Shiloh, Y.; Elkon, R.
Referenced in: 5 Publications (2011–2018)
Related Software: biclust; BicAT; UCI-ml; KEGG; BicOverlapper; FABIA; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

GeneMark

Software Authors:   Besemer, J., Borodovsky, M.
Referenced in: 6 Publications (1993–2016)
Related Software: FragGeneScan; SUMO; Pfam; GeneMarkS; UniProt; InterProScan; …
Main Fields: Dynamical systems and ergodic theory (37-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

KeyGraph

Software Authors:   Ohsawa Y, Benson NE, Yachida M
Referenced in: 3 Publications (2001–2015)
Related Software: KEA; C4.5
Main Fields: Computer science (68-XX)

RAIcode

Software Authors:   Yehezkel, Raanan; Lerner, Boaz
Referenced in: 8 Publications (2009–2019)
Related Software: TETRAD; BNT; pcalg; UCI-ml; rcausal; bnlearn; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Numerical analysis (65-XX)

RSPOP

Software Authors:   Ang, Kai Keng; Quek, Chai
Referenced in: 4 Publications (2005–2021)
Related Software: GenSoFNN; ANFIS; clusfind; Kernlab; R; DENFIS
Main Fields: Computer science (68-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX); Systems theory; control (93-XX)

ToppGene Suite

Software Authors:   Chen, J., E. E. Bardes, B. J. Aronow, A. G. Jegga
Referenced in: 6 Publications (2018–2021)
Related Software: glasso; DEseq; SILGGM; TestBMN; huge; GlobalMIT; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

Alloy*

Software Authors:   Milicevic, A., Near, J.P., Kang, E., Jackson, D.
Referenced in: 6 Publications (2017–2021)
Related Software: z3; GitHub; margrave; TestEra; Kodkod; MiniSat; …
Main Fields: General and overarching topics; collections (00-XX); Mathematical logic and foundations (03-XX); Combinatorics (05-XX)

causaleffect

Software Authors:   Santtu Tikka
Referenced in: 4 Publications (2008–2019)
Related Software: R; dagitty; igraph; pcalg; dosearch; DoWhy; …
Main Fields: Mathematical logic and foundations (03-XX); Combinatorics (05-XX); Statistics (62-XX)

CLIP

Software Authors:   Rhodes N, Willett P, Calvet A, Dunbar JB, Humblet C
Referenced in: 7 Publications (2006–2018)
Related Software: DIMACS; TRON; Biq Mac; SDPT3; Algorithm 457
Main Fields: Combinatorics (05-XX); Linear and multilinear algebra; matrix theory (15-XX); Numerical analysis (65-XX)

cntclust

Software Authors:   Farcomeni, Alessio; Punzo, Antonio
Referenced in: 7 Publications (2020–2022)
Related Software: R; ContaminatedMixt; teigen; GitHub; otrimle; mixture; …
Main Fields: Statistics (62-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

GlobPlot

Software Authors:   Rune Linding, Robert B. Russell, Victor Neduva and Toby J. Gibson
Referenced in: 4 Publications (2008–2019)
Related Software: IUPred; RONN; FoldIndex; FoldUnfold; DISOPRED; ELM; …
Main Fields: Mathematical logic and foundations (03-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

Rate4Site

Software Authors:   Pupko T, Bell RE, Mayrose I, Glaser F, Ben-Tal N
Referenced in: 1 Publication (2011)
Related Software: BLAST; PSI-BLAST; Naccess; ConSeq; R; PROSITE; …
Main Fields: Biology and other natural sciences (92-XX); Information and communication theory, circuits (94-XX)

SYMORO+

Software Authors:   Khalil, W., Creusot, D.
Referenced in: 5 Publications (1990–2017)
Related Software: MuJoCo; OpenSYMORO; ROBOTRAN; Bullet; Open Dynamics Engine; Maxima; …
Main Fields: Computer science (68-XX); Mechanics of particles and systems (70-XX); Systems theory; control (93-XX)

ASAP

Software Authors:   Khandelwal, Girish; Lee, Kyounghwan; Yener, Aylin; Serbetli, Semih
Referenced in: 4 Publications (2007–2010)
Related Software: Access/CPN; Design/CPN; CPN/Tools; Algorithm 786
Main Fields: Computer science (68-XX); Information and communication theory, circuits (94-XX)

C-HiLasso

Software Authors:   Sprechmann, Pablo; Ramírez, Ignacio; Sapiro, Guillermo; Eldar, Yonina C.
Referenced in: 5 Publications (2011–2022)
Related Software: msgl; CVXPY; ECOS; glmnet; glasso; R; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

CMfinder

Software Authors:   Z. Yao, Z. Weinberg, W.L. Ruzzo
Referenced in: 4 Publications (2008–2018)
Related Software: Infernal; Rfam; pLoc-mHum; FoldRate; iDNA4mC; PROSPERous; …
Main Fields: General and overarching topics; collections (00-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

CosFace

Software Authors:   Hao Wang, Yitong Wang, Zheng Zhou, Xing Ji, Dihong Gong, Jingchao Zhou, Zhifeng Li, Wei Liu
Referenced in: 4 Publications (2019–2021)
Related Software: ImageNet; FaceNet; SphereFace; AlexNet; DeepFace; VGGFace2; …
Main Fields: Computer science (68-XX); Operations research, mathematical programming (90-XX); Information and communication theory, circuits (94-XX)

dsoa

Software Authors:   Fabien, Brian C.
Referenced in: 6 Publications (2010–2017)
Related Software: SOCS; qpOASES; OOQP; PROPT; ACADO; ROS3P; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX); Operations research, mathematical programming (90-XX)

EnsemblePail

Software Authors:   Yan Xu, Xiaobo Wang, Jun Ding, Ling-Yun Wu, Naiyang Deng
Referenced in: 6 Publications (2010–2019)
Related Software: Cell-PLoc; iHyd-PseAAC; iUbiq-Lys; iATC-mHyb; iRNA-PseColl; pLoc-mVirus; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

lpc

Software Authors:   Daniela M Witten; Robert Tibshirani
Referenced in: 6 Publications (2008–2021)
Related Software: mclust; sparcl; ElemStatLearn; depthTools; DepthProc; ddalpha; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)