mixOmics Software Authors: Sebastien Dejean, Ignacio Gonzalez, Kim-Anh Le Cao, Pierre Monget, Jeff Coquery, FangZou Yao, Benoit Liquet, Florian Rohart Cited in: 24 Publications (2008–2022) Related Software: R; PMA; spls; CCA; VSURF; randomForest; … Main Fields: Statistics (62-XX); Computer science (68-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)
E-CELL Software Authors: M Tomita, K Hashimoto, K Takahashi, T S Shimizu,Y Matsuzaki ,F Miyoshi, K Saito S Tanida,K Yugi,J C Venter; C A Hutchison Cited in: 18 Publications (2003–2019) Related Software: GEPASI; KEGG; Virtual Cell; SCAMP; COPASI; MCELL; … Main Fields: Mathematical logic and foundations (03-XX); Probability theory and stochastic processes (60-XX); Numerical analysis (65-XX)
caGrid Software Authors: Saltz J, Oster S, Hastings S, et al: Cited in: 0 Publications Related Software: Globus Toolkit; Bio2RDF; BioPortal; BioMOBY; Taverna; QTAG; … Main Fields: –
PREvaIL Software Authors: Song, Jiangning; Li, Fuyi; Takemoto, Kazuhiro; Haffari, Gholamreza; Akutsu, Tatsuya; Chou, Kuo-Chen; Webb, Geoffrey I. Cited in: 10 Publications (2018–2019) Related Software: iDNA6mA-PseKNC; iRNA-PseColl; pLoc-mAnimal; 2L-piRNA; iPromoter-2L; iRSpot-EL; … Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
iBAG Software Authors: Wang, W., Baladandayuthapani, V., Morris, J. S., Broom, B. M., Manyam, G. Do, K.-A. Cited in: 6 Publications (2015–2021) Related Software: TCGA-assembler; PenPC; XMRF; glasso; GISTIC2.0; GTM; … Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
Bioclipse Software Authors: Spjuth O, Alvarsson J, Berg A, Eklund M, Kuhn S, Masak C, Torrance G, Wagener J, Willighagen E, Steinbeck C, Wikberg J. Cited in: 0 Publications Related Software: CDK; Taverna; BioMOBY; BIRT; Screensaver; Spring; … Main Fields: –
DR-Integrator Software Authors: Salari K, Tibshirani R, Pollack JR Cited in: 3 Publications (2013–2021) Related Software: DAVID; ic.infer; CGHcall Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)
INMEX Software Authors: Xia, J., C.D. Fjell, et al. Cited in: 2 Publications (2018) Related Software: R; shiny; limma; edgeR; ExAtlas; ScanGEO; … Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
integrOmics Software Authors: Kim-Anh Lê Cao, Ignacio González, Sébastien Déjean Cited in: 1 Publication (2019) Related Software: R; mixOmics; plotly; Highcharter; shiny; OOMPA; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
PLAS Software Authors: Carlos Cordeiro; António Ferreira Cited in: 3 Publications (2005–2011) Related Software: R; episode; S-timator; simode; Data2Dynamics; CollocInfer; … Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)
TCGAbiolinks Software Authors: Antonio Colaprico, Tiago Chedraoui Silva, Catharina Olsen, Luciano Garofano, Davide Garolini, Claudia Cava, Thais Sabedot, Tathiane Malta, Stefano M. Pagnotta, Isabella Castiglioni, Michele Ceccarelli, Gianluca Bontempi, Houtan Noushmehr Cited in: 4 Publications (2020–2021) Related Software: glmnet; iClusterPlus; DESeq2; FSCseq; NB.MClust; zinbwave; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
CNAmet Software Authors: R. Louhimo; S. Hautaniemi Cited in: 2 Publications (2012–2015) Related Software: R; DAVID; HmmSeq; BaySeq; tmvtnorm; edgeR; … Main Fields: Statistics (62-XX)
COHCAP Software Authors: Warden, C. D., H. Lee, J. D. Tompkins, X. Li, C. Wang, A. D. Riggs, H. Yu, R. Jove, Y.-C. Yuan Cited in: 2 Publications (2016) Related Software: IMA; Bioconductor; MethylSig; HMM-Fisher; SAAP-RRBS; MOABS; … Main Fields: Probability theory and stochastic processes (60-XX); Biology and other natural sciences (92-XX)
dmGWAS Software Authors: Jia P, Zheng S, Long J, Zheng W, Zhao Z. Cited in: 3 Publications (2016–2020) Related Software: STRING; Eigenstrat; HAPGEN2; DAVID; miRNet; SQUAD; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
Enrichr Software Authors: E. Y. Chen, C. M. Tan, Y. Kou, Q. Duan, Z. Wang, G. V. Meirelles, N. R. Clark, A. Ma'ayan, Cited in: 2 Publications (2015–2016) Related Software: Bioconductor; R; COHCAP; IMA; KEGG; RnBeads; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
IGV Software Authors: Thorvaldsdóttir H, Robinson JT, Mesirov JP Cited in: 3 Publications (2016–2018) Related Software: BEDTools; R; FastQC; Samtools; FIMO; BioMart; … Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)
MetaboAnalyst Software Authors: Xia J, Mandal R, Sinelnikov IV, Broadhurst D, Wishart DS Cited in: 1 Publication (2018) Related Software: plotly; Highcharter; shiny; OOMPA; hgu133plus2.db; HMDB; … Main Fields: Statistics (62-XX)
AJIVE Software Authors: Feng, Qing; Jiang, Meilei; Hannig, Jan; Marron, J. S. Cited in: 2 Publications (2018–2021) Related Software: JIVE; mvlearn; Multiview; Python; Scikit; UCI-ml; … Main Fields: Statistics (62-XX); Computer science (68-XX)
AQUATOX Software Authors: Richard A. Park; Jonathan S. Clough; Marjorie Coombs Wellman Cited in: 1 Publication (2021) Related Software: nlme; R; CAPTAIN; Meso CASiMiR; QUAL2K; HEC-RAS; … Main Fields: Statistics (62-XX); Computer science (68-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)
Echopype Software Authors: Wu-Jung Lee, Emilio Mayorga, Landung Setiawan, Imran Majeed, Kavin Nguyen, Valentina Staneva Cited in: 0 Publications Related Software: PyEcholab; Matecho; ESP3; LSSS; Echoview; CASAL; … Main Fields: –
ImmunoGrid Software Authors: F Pappalardo, MD Halling-Brown, et. al. Cited in: 2 Publications (2012) Related Software: SNOOPY Main Fields: Numerical analysis (65-XX); Biology and other natural sciences (92-XX); Systems theory; control (93-XX)
IntaRNA Software Authors: Wright PR, Georg J, Mann M, Sorescu DA, Richter AS, Lott S, Kleinkauf R, Hess WR, Backofen R Cited in: 2 Publications (2019–2020) Related Software: CopraRNA; FATODE; NOMAD; GeneNetWeaver; Path2Models; SOSlib; … Main Fields: Biology and other natural sciences (92-XX)
CIPHER Software Authors: Guzman C, D'Orso I Cited in: 0 Publications Related Software: TRAPLINE; bcbio-nextgen; Snakemake; Taverna; Galaxy; STAR; … Main Fields: –
Cistrome Software Authors: Liu T1, Ortiz JA, Taing L, Meyer CA, Lee B, Zhang Y, Shin H, Wong SS, Ma J, Lei Y, Pape UJ, Poidinger M, Chen Y, Yeung K, Brown M, Turpaz Y, Liu XS Cited in: 1 Publication (2016) Related Software: itsmr; FastQC; ODoSE; Nebula; ITSM2000; R Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX)
CoMetGeNe Software Authors: Alexandra Zaharia, Bernard Labedan, Christine Froidevaux, Alain Denise Cited in: 1 Publication (2022) Related Software: – Main Fields: Operations research, mathematical programming (90-XX)
deepTools2 Software Authors: Ramírez, F., et al Cited in: 1 Publication (2019) Related Software: ChromHMM; ModHMM; GitHub; BayesPeak Main Fields: Biology and other natural sciences (92-XX)
FastDMA Software Authors: Dingming Wu, Jin Gu, Michael Q Zhang Cited in: 1 Publication (2019) Related Software: Kernlab; DESeq2; PINCAGE; ChAMP; arm; Minfi; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
iBATCGH Software Authors: Cassese, Alberto; Guindani, Michele; Vannucci, Marina Cited in: 1 Publication (2016) Related Software: PennCNV; CNVassoc; DAVID; Rcpp; R Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)
IGV-plus Software Authors: Agliata, Antonio; De Martino, Marco; Ferraro, Maria Brigida; Guarracino, Mario Rosario Cited in: 0 Publications Related Software: – Main Fields: –
intePareto Software Authors: Yingying Cao Cited in: 1 Publication (2021) Related Software: iClusterPlus; MethylSeekR; rGREAT; BiSeq; rGADEM; Trim Galore; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
Metabox Software Authors: Wanichthanarak K, Fan S, Grapov D, Barupal DK, Fiehn O Cited in: 0 Publications Related Software: plotly; Highcharter; shiny; OOMPA; hgu133plus2.db; HMDB; … Main Fields: –
MiningSuite Software Authors: Lartillot, O. Cited in: 1 Publication (2016) Related Software: Matlab Main Fields: General and overarching topics; collections (00-XX); Computer science (68-XX)
MS-BID Software Authors: Hwang, Daehee; Zhang, Ning; Lee, Hookeun; Yi, Eugene; Zhang, Hui; Lee, Inyoul Y.; Hood, Leroy; Aebersold, Ruedi Cited in: 0 Publications Related Software: – Main Fields: –
MTeQTLResults Software Authors: Molstad, Aaron J.; Sun, Wei; Hsu, Li Cited in: 1 Publication (2021) Related Software: GWAS Catalog; MultiXcan; GenoExp; GitHub; QUIC Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
nsiGGM Software Authors: Kim, SungHwan; Jhong, Jae-Hwan; Lee, JungJun; Koo, Ja-Yong; Lee, ByungYong; Han, SungWon Cited in: 1 Publication (2017) Related Software: glasso Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
Pash Software Authors: Coarfa, C., Yu, F., Miller, C.A. et al. Cited in: 1 Publication (2017) Related Software: MapSplice; BWA; BatMeth; PSAR-Align; CAP-miRSeq; MAP-RSeq; … Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)
PIRSF Software Authors: Nikolskayaw QN, Arighi CN, Huang H, Barker WC, Wu CH Cited in: 1 Publication (2017) Related Software: SeqVis; iGTP; TOPAL; ExaBayes; CLANN; LDDist; … Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)
Radio-iBAG Software Authors: Zhang, Youyi; Morris, Jeffrey S.; Aerry, Shivali Narang; Rao, Arvind U. K.; Baladandayuthapani, Veerabhadran Cited in: 1 Publication (2019) Related Software: mgcv; iBAG; multiMiR; TCGA-assembler Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
SpidermiR Software Authors: Claudia Cava, Antonio Colaprico, Alex Graudenzi, Gloria Bertoli, Tiago C. Silva, Catharina Olsen, Houtan Noushmehr, Gianluca Bontempi, Giancarlo Mauri, Isabella Castiglioni Cited in: 1 Publication (2019) Related Software: – Main Fields: Biology and other natural sciences (92-XX)
trigger Software Authors: Lin S. Chen; Dipen P. Sangurdekar; John D. Storey Cited in: 1 Publication (2019) Related Software: pcalg; UniProt; KEGG; TETRAD; Bioconductor Main Fields: Biology and other natural sciences (92-XX)
WemIQ Software Authors: Zhang, J., Kuo, C.-C. J., Chen, L. Cited in: 1 Publication (2018) Related Software: CLIIQ; MITIE; GENCODE; RSEM; TopHat; casper Main Fields: Statistics (62-XX)
FISH Oracle Software Authors: M. Mader, R. Simon, S. Kurtz Cited in: 0 Publications Related Software: – Main Fields: –
Maftools Software Authors: Mayakonda, A.; Lin, D. C.; Assenov, Y.; Plass, C.; Koeffler, H. P. Cited in: 0 Publications Related Software: – Main Fields: –
Meta-i6mA Software Authors: Hasan, M. M.; Basith, S.; Khatun, M. S.; Lee, G.; Manavalan, B.; Kurata, H. Cited in: 0 Publications Related Software: – Main Fields: –
MetaboTools Software Authors: Maike K. Aurich, Ronan M.T. Fleming, Ines Thiele Cited in: 0 Publications Related Software: – Main Fields: –
PharmacoGx Software Authors: Smirnov, Petr; Safikhani, Zhaleh; Hachem, Nehme; Wang, Dong; She, Adrian; Olsen, Catharina; Freeman, Mark; Selby, Heather; Gendoo, Deena M. A.; Grossmann, Patrick; Beck, Andrew H.; Aerts, Hugo J. W. L.; Lupien, Mathieu; Goldenberg, Anna; Haibe-Kains, Benjamin Cited in: 0 Publications Related Software: – Main Fields: –