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Found 207 Software Packages (Results 1–100)

impute

Software Authors:   Troyanskaya, O.; Cantor, M.; Sherlock, G.; Brown, P.; Hastie, T.; Tibshirani, R.; Botstein, D.; Altman, R.
Cited in: 92 Publications (2002–2023)
Related Software: R; softImpute; VIM; missForest; MICE; AS 136; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

rda

Software Authors:   Yaqian Guo; Trevor Hastie; Robert Tibshirani
Cited in: 97 Publications (2003–2022)
Related Software: penalizedLDA; ElemStatLearn; R; LIBSVM; glmnet; UCI-ml; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Statistics (62-XX); Numerical analysis (65-XX)

limma

Software Authors:   Ritchie ME, Phipson B, Wu D, Hu Y, Law CW, Shi W, Smyth GK
Cited in: 49 Publications (2005–2022)
Related Software: Bioconductor; gcrma; R; edgeR; Voom; DEseq; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

COSA

Software Authors:   Friedman, Jerome H.; Meulman, Jacqueline J.
Cited in: 52 Publications (2003–2023)
Related Software: UCI-ml; R; sparcl; mclust; clusfind; Silhouettes; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

edgeR

Software Authors:   Mark D. Robinson; Davis J. McCarthy; Gordon K. Smyth
Cited in: 48 Publications (2011–2021)
Related Software: Bioconductor; R; DEseq; Voom; BaySeq; TopHat; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)

boost

Software Authors:   Marcel Dettling
Cited in: 41 Publications (2007–2022)
Related Software: ElemStatLearn; R; glmnet; rda; glasso; UCI-ml; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

ARACNE

Software Authors:   A. A. Margolin, I. Nemenman, K. Basso, C. Wiggins, G. Stolovitzky, R. D. Favera, A. Califano
Cited in: 34 Publications (2009–2022)
Related Software: minet; KEGG; glasso; SynTReN; GeneNetWeaver; R; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

penalized

Software Authors:   Meijer, Rosa J.; Goeman, Jelle J.
Cited in: 21 Publications (2010–2022)
Related Software: R; glmnet; SAS; glmpath; CRAN; randomForest; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Numerical analysis (65-XX)

vsn

Software Authors:   Wolfgang Huber, Anja von Heydebreck, Dennis Kostka, David Kreil, Hans-Ulrich Klein, Robert Gentleman, Deepayan Sarkar and Gordon Smyth
Cited in: 22 Publications (2003–2019)
Related Software: R; Bioconductor; sma; gcrma; clusfind; affy; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Numerical analysis (65-XX)

SparseLOGREG

Software Authors:   S. K. Shevade; S. S. Keerthi
Cited in: 24 Publications (2006–2021)
Related Software: glmnet; LASSO; R; penalized; TFOCS; LIBSVM; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

LAS

Software Authors:   Shabalin, Andrey A.; Weigman, Victor J.; Perou, Charles M.; Nobel, Andrew B.
Cited in: 23 Publications (2009–2022)
Related Software: FABIA; PMA; GitHub; COSA; ElemStatLearn; SSLB; …
Main Fields: Combinatorics (05-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

GeneRank

Software Authors:   Julie L Morrison; Rainer Breitling; Desmond J Higham; David R Gilbert
Cited in: 16 Publications (2010–2020)
Related Software: Matlab; moleculaRnetworks; testmatrix; CONTEST; JDQZ; JDQR; …
Main Fields: Combinatorics (05-XX); Linear and multilinear algebra; matrix theory (15-XX); Numerical analysis (65-XX)

uniCox

Software Authors:   Rob Tibshirani
Cited in: 17 Publications (2009–2022)
Related Software: R; AS 136; glmnet; psbcGroup; BayesDA; sparsenet; …
Main Fields: Partial differential equations (35-XX); Statistics (62-XX); Numerical analysis (65-XX)

ORIOGEN

Software Authors:   Guo, Wenge; Peddada, Shyamal
Cited in: 14 Publications (2008–2020)
Related Software: MCFDR; MMCTest; R; QuickMMCTest; simctest; bootlib; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

FABIA

Software Authors:   Sepp Hochreiter, Ulrich Bodenhofer, Martin Heusel, Andreas Mayr, Andreas Mitterecker, Adetayo Kasim, Tatsiana Khamiakova, Suzy Van Sanden, Dan Lin, Willem Talloen, Luc Bijnens, Hinrich W.H. Göhlmann, Ziv Shkedy, and Djork-Arné Clevert
Cited in: 13 Publications (2013–2022)
Related Software: BicPAMS; BicNET; BicAT; COSA; Matlab; R; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

PROXIMUS

Software Authors:   M. Koyuturk; A. Grama
Cited in: 12 Publications (2006–2022)
Related Software: UCI-ml; DENCLUE; Walksat; Paramils; Hyperheuristics; ComiRNet; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Statistics (62-XX); Computer science (68-XX)

GeneNetWeaver

Software Authors:   Schaffter, T; Marbach, D; Floreano, D
Cited in: 11 Publications (2013–2019)
Related Software: ARACNE; RegulonDB; SynTReN; R; TETRAD; GeNGe; …
Main Fields: Combinatorics (05-XX); Ordinary differential equations (34-XX); Statistics (62-XX)

GO-TermFinder

Software Authors:   Boyle, E. I., Weng, S., Gollub, J., Jin, H., Botstein, D., Cherry, J. M., Sherlock, G.
Cited in: 5 Publications (2013–2020)
Related Software: FatiGO; Cytoscape; KEGG; GOstat; iGA; STRING; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

leapp

Software Authors:   Yunting Sun , Nancy R.Zhang, Art B.Owen
Cited in: 12 Publications (2012–2022)
Related Software: FAMT; Eigenstrat; DDL; CRAN; glasso; glmnet; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

TM4

Software Authors:   Saeed, A.I.; Sharov, V.; White, J.; Li, J.; Liang, W.; Bhagabati, N.; Braisted, J.; Klapa, M.; Currier, T.; Thiagarajan, M.; Sturn, A.; Snuffin, M.; Rezantsev, A.; Popov, D.; Ryltsov, A.; Kostukovich, E.; Borisovsky, I.; Liu, Z.; Vinsavich, A.; Trush, V.; Quackenbush, J.
Cited in: 4 Publications (2009–2014)
Related Software: Bioconductor; ArrayExpress; SAM; WinBUGS; WEKA; apcluster; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

beadarray

Software Authors:   Dunning, Mark J.; Thorne, Natalie P.; Camilier, Isabelle; Smith, Michael L.; Tavar'e, Simon
Cited in: 3 Publications (2006–2012)
Related Software: R; Bioconductor; lumi; limma; edgeR; beadarrayExampleData; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)

GEOquery

Software Authors:   Sean D, Meltzer PS
Cited in: 7 Publications (2016–2022)
Related Software: R; Bioconductor; shiny; WEKA; AdaPT; adaptMT; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Computer science (68-XX)

maSigPro

Software Authors:   Conesa, A.; Nueda, M. J.; Talon, M.
Cited in: 6 Publications (2009–2021)
Related Software: Bioconductor; EDGE; edgeR; R; DESeq2; ptmixed; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

twilight

Software Authors:   Stefanie Scheid
Cited in: 8 Publications (2005–2022)
Related Software: TWILIGHT; Bioconductor; R; mixfdr; COBS; DAVID; …
Main Fields: Combinatorics (05-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

CLIFF

Software Authors:   Eric P. Xing, Richard M. Karp
Cited in: 7 Publications (2005–2019)
Related Software: PAML; t-SNE; kdetrees; Mesquite; RankGene; CLOSET; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Operations research, mathematical programming (90-XX)

daMA

Software Authors:   Jobst Landgrebe; Frank Bretz
Cited in: 9 Publications (2005–2019)
Related Software: Mathematica; GAUSS; nauty; vsn; Bioconductor; R
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

GOstats

Software Authors:   R. Gentleman; S. Falcon
Cited in: 8 Publications (2004–2020)
Related Software: Bioconductor; R; RSiena; sna; ggplot2; lattice; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

GOTM

Software Authors:   Bing Zhang, Denise Schmoyer, Stefan Kirov; Jay Snoddy
Cited in: 6 Publications (2005–2014)
Related Software: FatiGO; KEGG; GOstat; DAVID; Onto-Tools; GOToolBox; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

HykGene

Software Authors:   Wang, Y.; Makedon, F.; Ford, J.; Pearlman, J.
Cited in: 7 Publications (2008–2019)
Related Software: GALib; DistAl; boost; impute; ACOSampling; PCP; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Computer science (68-XX)

oligo

Software Authors:   Benilton Carvalho, Rafael Irizarry, Ben Bolstad, Vincent Carey, Wolfgang Huber, Harris Jaffee, Jim MacDonald, Matt Settles
Cited in: 7 Publications (2007–2016)
Related Software: BRLMM; PLASQ; R; edgeR; CARAT; GenoSNP; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

plsgenomics

Software Authors:   Boulesteix AL, Lambert-Lacroix S, Peyre J, Strimmer K
Cited in: 8 Publications (2013–2022)
Related Software: R; mclust; glmnet; MASS (R); rrcov; ROBPCA; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

DNA

Software Authors:   Gill, R., Datta, S., Datta, S.
Cited in: 7 Publications (2013–2021)
Related Software: WGCNA; GlobalMIT; MAST; MrTADFinder; slingshot; SNN-Cliq; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

minet

Software Authors:   Meyer, P.E.; Lafitte, F.; Bontempi, G.
Cited in: 7 Publications (2010–2019)
Related Software: ARACNE; SynTReN; R; edgeR; glasso; igraph; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Statistics (62-XX)

superpc

Software Authors:   Eric Bair, R. Tibshirani
Cited in: 5 Publications (2002–2018)
Related Software: ElemStatLearn; vsn; Bioconductor; glmnet; MapSplice; MIM; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

SVDMAN

Software Authors:   Michael E. Wall, Patricia A. Dyck, Thomas S. Brettin
Cited in: 5 Publications (2003–2017)
Related Software: impute; OptShrink; Pyglrm; LowRankModels; clusfind; DAVID; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Statistics (62-XX); Numerical analysis (65-XX)

varSelRF

Software Authors:   Ramon Diaz-Uriarte
Cited in: 2 Publications (2009)
Related Software: R; GeneSrF; randomForest; Boruta; FSelector; mlbench; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

COXPRESdb

Software Authors:   Obayashi, T.; Hayashi, S.; Shibaoka, M.; Saeki, M.; Ohta, H.; Kinoshita, K.
Cited in: 3 Publications (2011–2022)
Related Software: KEGG; ArrayExpress; Cytoscape; Symmetric NMTF; QPLIB; STRING; …
Main Fields: Statistics (62-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

datamicroarray

Software Authors:   Ramey, J. A
Cited in: 7 Publications (2017–2022)
Related Software: R; GitHub; penalizedLDA; rda; gamboostLSS; GAMLSS; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

Knorm

Software Authors:   Teng, Siew Leng; Huang, Haiyan
Cited in: 7 Publications (2009–2022)
Related Software: R; clusfind; MIM; dynamicTreeCut; glasso; HDTD; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

MAPPFinder

Software Authors:   Doniger SW, Salomonis N, Dahlquist KD, Vranizan K, Lawlor SC, Conklin BR
Cited in: 4 Publications (2006–2011)
Related Software: GenMAPP; KEGG; Bioconductor; DAVID; FatiGO; Reactome; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)

marrayClasses

Software Authors:   Sandrine Dudoit, Jean Yee Hwa Yang
Cited in: 7 Publications (2003–2013)
Related Software: marrayPlots; marrayNorm; marrayInput; R; Bioconductor; EBarrays; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)

Oncomine

Software Authors:   Rhodes DR, Kalyana-Sundaram S, Mahavisno V et al
Cited in: 3 Publications (2011–2016)
Related Software: GeneSigDB; Bioconductor; ArrayExpress; Galaxy; ROAST; featureCounts; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)

PAGE

Software Authors:   Kim, S.Y., Volsky, D.J.
Cited in: 2 Publications (2015–2016)
Related Software: GSA; R; KEGG; Bioconductor; starBase; Pathway Commons; …
Main Fields: Combinatorics (05-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

PICNIC

Software Authors:   Greenman CD, Bignell G, Butler A, Edkins S, Hinton J, Beare D, Swamy S, Santarius T, Chen L, Widaa S, Futreal PA, Stratton MR
Cited in: 5 Publications (2010–2022)
Related Software: PLASQ; CARAT; GenoSNP; BRLMM; oligo; Repitools; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Computer science (68-XX)

aroma.affymetrix

Software Authors:   Henrik Bengtsson, James Bullard, Kasper Hansen, Pierre Neuvial, Elizabeth Purdom, Mark Robinson, Ken Simpson
Cited in: 1 Publication (2019)
Related Software: Bioconductor; R; MADS; gcrma; ANOSVA; GenoSNP; …
Main Fields: Statistics (62-XX)

CAMERA

Software Authors:   Wu, D.; G. K. Smyth
Cited in: 6 Publications (2015–2021)
Related Software: R; ROAST; pcalg; pyhrt; knockoff; cpi; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Computer science (68-XX)

CASPAR

Software Authors:   Kaderali, L.; Zander, T.; Faigle, U.; Wolf, J.; Schultze, J. L.; Schrade, R.
Cited in: 5 Publications (2006–2012)
Related Software: XPPAUT; WilcoxCV; rda; GenePattern; GeneSrF; mboost; …
Main Fields: Partial differential equations (35-XX); Statistics (62-XX); Numerical analysis (65-XX)

curatedOvarianData

Software Authors:   Ganzfried BF, Riester M, Haibe-Kains B et al.
Cited in: 6 Publications (2015–2022)
Related Software: joint.Cox; glmnet; scModels; dynpred; spgam1; surrosurv; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

curvclust

Software Authors:   Giacofci, M.; Lambert-Lacroix, S.; Marot, G.; Picard, F.
Cited in: 6 Publications (2013–2018)
Related Software: wavethresh; R; CRAN; mclust; ggmap; CAPUSHE; …
Main Fields: Harmonic analysis on Euclidean spaces (42-XX); Statistics (62-XX)

Expression Profiler

Software Authors:   Jaak Vilo, Misha Kapushesky, Patrick Kemmeren, Ugis Sarkans, Alvis Brazma
Cited in: 1 Publication (2003)
Related Software: Bioconductor; Taverna; R; Matlab; Globus Toolkit; ASKALON; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

GEMS

Software Authors:   Statnikov, A.; Tsamardinos, I.; Dosbayev, Y.; Aliferis, C. F.
Cited in: 4 Publications (2018–2020)
Related Software: UCI-ml; BeamECOC; Scikit; LIBSVM; GWO; PRMLT; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

IMA

Software Authors:   Wang, D., Yan, L., Hu, Q., Sucheston, L. E., Higgins, M. J., Ambrosone, C. B., Johnson, C. S., Smiraglia, D. J., Liu, S.
Cited in: 5 Publications (2014–2022)
Related Software: Bioconductor; Minfi; COHCAP; MethylSig; methyAnalysis; HMM-Fisher; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

lpc

Software Authors:   Daniela M Witten; Robert Tibshirani
Cited in: 6 Publications (2008–2021)
Related Software: mclust; sparcl; ElemStatLearn; depthTools; DepthProc; ddalpha; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

PLASQ

Software Authors:   Laframboise, Thomas; Harrington, David; Weir, Barbara A.
Cited in: 5 Publications (2007–2011)
Related Software: CARAT; R; PICNIC; BRLMM; oligo; GenoSNP; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

ACOSampling

Software Authors:   Yu, H.; Ni, J.; Zhao, J.
Cited in: 4 Publications (2014–2021)
Related Software: SMOTE; ADASYN; MWMOTE; JStatCom; GSVM; ECoL; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Computer science (68-XX)

colcor

Software Authors:   Muralidharan, Omkar
Cited in: 5 Publications (2010–2018)
Related Software: glasso; Knorm; spcov; Flury; sda; boost; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Numerical analysis (65-XX)

GOSim

Software Authors:   Holger Fröhlich
Cited in: 4 Publications (2011–2017)
Related Software: TRANSFAC; SeqVis; iGTP; TOPAL; ExaBayes; CLANN; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)

GSPPCA

Software Authors:   Bouveyron, Charles; Latouche, Pierre; Mattei, Pierre-Alexandre
Cited in: 5 Publications (2017–2020)
Related Software: msda; PMA; Bessel; penalizedLDA; GitHub; PCANet; …
Main Fields: Statistics (62-XX)

LCE

Software Authors:   Iam-on N, Boongoen T, Garrett S.
Cited in: 3 Publications (2015–2018)
Related Software: SimRank; LinkCluE; clusfind; UCI-ml; Matlab; clue; …
Main Fields: Statistics (62-XX); Computer science (68-XX)

marrayInput

Software Authors:   Sandrine Dudoit, Jean Yee Hwa Yang
Cited in: 5 Publications (2003–2013)
Related Software: marrayPlots; marrayNorm; marrayClasses; Bioconductor; EBarrays; R; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)

marrayNorm

Software Authors:   Sandrine Dudoit, Jean Yee Hwa Yang
Cited in: 5 Publications (2003–2013)
Related Software: marrayClasses; marrayPlots; marrayInput; Bioconductor; R; EBarrays; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)

marrayPlots

Software Authors:   Sandrine Dudoit, Jean Yee Hwa Yang
Cited in: 5 Publications (2003–2013)
Related Software: marrayClasses; marrayNorm; marrayInput; Bioconductor; R; EBarrays; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)

Puma

Software Authors:   Pearson, Richard D.; Liu, Xuejun; Sanguinetti, Guido; Milo, Marta; Lawrence, Neil D.; Rattray, Magnus
Cited in: 2 Publications (2016–2022)
Related Software: Bioconductor; R; Affycomp III; affy; word2vec; idr; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Fluid mechanics (76-XX)

STEM

Software Authors:   Ernst, J.; Bar-Joseph, Z.
Cited in: 3 Publications (2010–2021)
Related Software: EDGE; maSigPro; ORIOGEN; Silhouettes; GOALIE; GOurmet; …
Main Fields: Ordinary differential equations (34-XX); Statistics (62-XX); Computer science (68-XX)

VarMixt

Software Authors:   Delmar P, Robin S, Daudin JJ
Cited in: 3 Publications (2009–2012)
Related Software: SequentialMA; EMMIX; R; kerfdr; maSigPro; corpor; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

ArrayCluster

Software Authors:   Yoshida R, Higuchi T, Imoto S, Miyano S.
Cited in: 4 Publications (2009–2016)
Related Software: mclust; PGMM; R; AS 136; LISREL; TCLUST; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX)

ChIPmix

Software Authors:   Marie-Laure Martin-Magniette, Tristan Mary-Huard, Caroline Bérard, Stéphane Robin
Cited in: 4 Publications (2013–2020)
Related Software: mixreg; mixtools; flexmix; R; SenSrivastava; Segmented; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

CLENCH

Software Authors:   Shah N. H., Fedoroff N. V.
Cited in: 2 Publications (2005–2010)
Related Software: GOstat; KEGG; BiNGO; FatiGO; GFINDer; GOToolBox; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

DAnTE

Software Authors:   Polpitiya, A. D., Qian, W. J., Jaitly, N., Petyuk, V. A., Adkins, J. N., II, D. G. C., Anderson, G. A., Smith, R. D.
Cited in: 2 Publications (2013–2018)
Related Software: impute; sn; NATbox; MAIA; BRLMM; Cytoscape; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

ErmineJ

Software Authors:   Lee, H. K.; Braynen, W.; Keshav, K.; Pavlidis, P.
Cited in: 1 Publication (2018)
Related Software: KEGG; Redhyte; GeneMANIA; CoXpress; IntAct; PAGE; …
Main Fields: Statistics (62-XX)

Gaggle

Software Authors:   P.T. Shannon, D.J. Reiss, R. Bonneau, N.S. Baliga
Cited in: 0 Publications
Related Software: GOPET; BayGO; GOLEM; GOtcha; BiNGO; ProbCD; …
Main Fields:

GSVA

Software Authors:   Hänzelmann S, Castelo R, Guinney J
Cited in: 4 Publications (2014–2021)
Related Software: Bioconductor; MSigDB; ROAST; DAVID; KEGG; edgeR; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

INCLUSive

Software Authors:   Coessens, B., Thijs, G., Aerts, S., et al.
Cited in: 2 Publications (2003–2007)
Related Software: MARAN; ElemStatLearn; Pfam; UniProt; Jalview; BioMOBY; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX); Systems theory; control (93-XX)

INMEX

Software Authors:   Xia, J., C.D. Fjell, et al.
Cited in: 2 Publications (2018)
Related Software: R; shiny; limma; edgeR; ExAtlas; ScanGEO; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

KIRMES

Software Authors:   Sebastian J. Schultheiss, Wolfgang Busch, Jan U. Lohmann, Oliver Kohlbacher, Gunnar Rätsch
Cited in: 2 Publications (2015–2017)
Related Software: CoMIK; mGene; AAindex; KEGG; LIBSVM; POIMs
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

lemma

Software Authors:   Haim Bar, Elizabeth Schifano
Cited in: 4 Publications (2010–2016)
Related Software: locfdr; limma; RankGene; BayesDA; WinBUGS; care; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)

limmaGUI

Software Authors:   James Wettenhall, Gordon Smyth, Keith Satterley
Cited in: 2 Publications (2012–2017)
Related Software: R; playwith; latticist; svDialogs; Qt WebView; Qt Designer; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

MAANOVA

Software Authors:   Hao Wu, M. Kathleen Kerr, Xiangqin Cui, Gary A. Churchill
Cited in: 3 Publications (2003–2007)
Related Software: EDGE; SAM; EBarrays; maSigPro; limma; marrayInput; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

ofw

Software Authors:   Kim-Anh Lê Cao, Patrick Chabrier
Cited in: 2 Publications (2009–2015)
Related Software: ipred; randomForest; R; BioMark; rpart; spikeSlabGAM; …
Main Fields: Statistics (62-XX)

ParaKMeans

Software Authors:   Kraj P, Sharma A, Garge N, Podolsky R, Richard A, Mcindoe RA
Cited in: 3 Publications (2013–2015)
Related Software: clusfind; AlexNet; ImageNet; Hadoop; MapReduce; Algorithm 97; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Statistics (62-XX); Computer science (68-XX)

poolMC

Software Authors:   Bruex, A., Gilbert, A., Kainkaryam, R., Schiefelbein, J., Woolf, P.
Cited in: 3 Publications (2011–2018)
Related Software:
Main Fields: Computer science (68-XX); Information and communication theory, circuits (94-XX)

SIMAGE

Software Authors:   Albers, C. J.; Jansen, R. C.; Kok, J.; Kuipers, O. P.; Van Hijum, S.
Cited in: 1 Publication (2009)
Related Software: Bioconductor; gcrma; BABAR; sma; impute; limma; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

CARMAweb

Software Authors:   Rainer J, Sanchez-Cabo F, Stocker G, Sturn A, Trajanoski Z
Cited in: 0 Publications
Related Software: R; gcrma; marray; ArrayExpress; affy; Bioconductor; …
Main Fields:

CMA

Software Authors:   M. Slawski, M. Daumer, A.-L. Boulesteix
Cited in: 3 Publications (2010–2016)
Related Software: R; Scikit; GitHub; parallelMap; OpenML; rminer; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

CoClust

Software Authors:   Di Lascio, F.Marta L.; Giannerini, Simone
Cited in: 3 Publications (2012–2019)
Related Software: CDVine; R; copula; mclust; maxLik; CDM; …
Main Fields: Statistics (62-XX)

compHclust

Software Authors:   Nowak, Gen; Tibshirani, Robert
Cited in: 3 Publications (2008–2019)
Related Software: BayesDA; Bioconductor; OSCAR; COSA; sparcl; glmnet; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

CoXpress

Software Authors:   M. Watson
Cited in: 2 Publications (2012–2016)
Related Software: fda (R); R; gcrma; mclust; EBarrays; BOBYQA; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

GEOmetadb

Software Authors:   Zhu Y, Davis S, Stephens R et al
Cited in: 1 Publication (2016)
Related Software: Galaxy; ROAST; featureCounts; Rsubread; recount; PROPER; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

HTqPCR

Software Authors:   Dvinge H, Bertone P
Cited in: 1 Publication (2018)
Related Software: R; qpcR; NormqPCR; ReadqPCR; pcr; ggplot2; …
Main Fields: Biology and other natural sciences (92-XX)

lumi

Software Authors:   Du P, Kibbe WA, Lin SM
Cited in: 0 Publications
Related Software: beadarray; R; beadarrayExampleData; beadarrayFilter; TM4; Refplus; …
Main Fields:

M@cbeth

Software Authors:   Pochet, N.L.M.M., Janssens, F.A.L., De Smet, F., Marchal, K., Suykens, J.A.K., De Moor, B.L.R
Cited in: 2 Publications (2009–2013)
Related Software: Matlab; Prophet; randomForest; GeneSrF; varSelRF; ipred; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

MADE4

Software Authors:   Culhane, A. C.; Thioulouse, J.; Perriere, G.; Higgins, D. G.
Cited in: 2 Publications (2012–2021)
Related Software: R; Rweb; SeqinR; ade4; ade4TkGUI; pmg; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)

MADS

Software Authors:   Xing, Y., Stoilov, P., Kapur, K., Han, A., Jiang, H., Shen, S., Black, D. L., Wong, W. H.
Cited in: 1 Publication (2011)
Related Software: aroma.affymetrix; Bioconductor; ANOSVA; GenXHC; R; gcrma; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)

onechannelgui

Software Authors:   Sanges R, Cordero F, Calogero RA
Cited in: 1 Publication (2015)
Related Software: Bioconductor; EMBOSS; Minimus; EMIRGE; ViennaRNA; TagCleaner; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

Prophet

Software Authors:   Medina, I.; Montaner, D.; Tárraga, J.; Dopazo, J.
Cited in: 1 Publication (2020)
Related Software: StFinMetrics; CausalImpact; randomForest; M@cbeth; GeneSrF; varSelRF; …
Main Fields: Operations research, mathematical programming (90-XX)

rSW-seq

Software Authors:   T.M. Kim, L.J. Luquette, R. Xi, P.J. Park
Cited in: 3 Publications (2016–2017)
Related Software: CNV-seq; SeqBBS; ReadDepth
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

SBRML

Software Authors:   Dada, JO; Spasić, I; Paton, NW; Mendes, P
Cited in: 1 Publication (2013)
Related Software: Virtual Cell; KEGG; COPASI; Octave; CellSys; cPath; …
Main Fields: Dynamical systems and ergodic theory (37-XX); Biology and other natural sciences (92-XX)

Simpleaffy

Software Authors:   Claire L. Wilson; Crispin J. Miller
Cited in: 1 Publication (2011)
Related Software: Bioconductor; gcrma; affy; multicore; ArrayExpress; arrayQualityMetrics; …
Main Fields: Statistics (62-XX)

tspair

Software Authors:   Leek, J. T.
Cited in: 2 Publications (2015–2020)
Related Software: fRMA; Salmon
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

UniPROBE

Software Authors:   Kimberly Robasky, Martha L. Bulyk
Cited in: 2 Publications (2016–2018)
Related Software: FIMO; InteroPORC; JASPAR; rVISTA; ORegAnno; BIPS; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)