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Found 495 Software Packages (Results 1–100)

Simulink

Software Authors:   MathWorks, Inc
Referenced in: 693 Publications (1994–2024)
Related Software: Matlab; Ode15s; StateFlow; Carsim; MATLAB ODE suite; Modelica; …
Main Fields: Ordinary differential equations (34-XX); Numerical analysis (65-XX); Computer science (68-XX)

SparseMatrix

Software Authors:   Davis, Timothy A; Hu, Yifan
Referenced in: 739 Publications (1997–2022)
Related Software: LAPACK; mctoolbox; Matlab; METIS; ILUT; HSL; …
Main Fields: Combinatorics (05-XX); Linear and multilinear algebra; matrix theory (15-XX); Numerical analysis (65-XX)

Uppaal

Software Authors:   Uppsala University, Sweden; Aalborg University in Denmark
Referenced in: 540 Publications (1990–2022)
Related Software: Kronos; HyTech; SPIN; PRISM; IF-2.0; NuSMV; …
Main Fields: Mathematical logic and foundations (03-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

COMSOL

Software Authors:   COMSOL Inc.
Referenced in: 441 Publications (2000–2022)
Related Software: Matlab; Python; Gmsh; FEniCS; OpenFOAM; ABAQUS; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

Mplus

Software Authors:   Mplus development team
Referenced in: 182 Publications (1998–2022)
Related Software: R; LISREL; EQS; SPSS; Latent GOLD; SAS; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

ANFIS

Software Authors:   Jang, J.-S.R.
Referenced in: 205 Publications (1995–2022)
Related Software: UCI-ml; Genocop; DENFIS; Matlab; HyFIS; Fuzzy Logic Toolbox; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

ABAQUS/Standard

Software Authors:   Dassault Systèmes
Referenced in: 215 Publications (1995–2022)
Related Software: ABAQUS; UMAT; Matlab; ABAQUS/Explicit; Mathematica; HYPLAS; …
Main Fields: Numerical analysis (65-XX); Mechanics of particles and systems (70-XX); Mechanics of deformable solids (74-XX)

NEURON

Software Authors:   Migliore, M.; Cannia, C.; Lytton, W.W.; Markram, Henry; Hines, M.L.
Referenced in: 135 Publications (1996–2021)
Related Software: NEST; Brian; Pynn; Spikenet; SpiNNaker; XPPAUT; …
Main Fields: Ordinary differential equations (34-XX); Partial differential equations (35-XX); Numerical analysis (65-XX)

Scilab

Software Authors:   Scilab Enterprises; Ricardo Fabbri
Referenced in: 169 Publications (1999–2022)
Related Software: Matlab; Octave; R; Mathematica; Maple; Scicos; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

libMesh

Software Authors:   B. S. Kirk, J. W. Peterson, R. H. Stogner, and G. F. Carey
Referenced in: 146 Publications (2004–2022)
Related Software: PETSc; deal.ii; FEniCS; Trilinos; Gmsh; FreeFem++; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

Fractional Order Chaotic Systems

Software Authors:   Ivo Petras
Referenced in: 155 Publications (2009–2022)
Related Software: Sprott's Software; Matlab; CRONE; ma2dfc; FODE; FracPECE; …
Main Fields: Real functions (26-XX); Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX)

NetLogo

Software Authors:   Elizabeth Sklar; Seth Tisue; Uri Wilensky
Referenced in: 85 Publications (2007–2022)
Related Software: Boids; Python; Matlab; MASON; NumPy; GAMS; …
Main Fields: Computer science (68-XX); Operations research, mathematical programming (90-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

Jupyter

Software Authors:   Project Jupyter; Perez, F.; Granger, B. E.
Referenced in: 45 Publications (2016–2022)
Related Software: Python; NumPy; SciPy; Matplotlib; Scikit; pandas; …
Main Fields: Algebraic geometry (14-XX); Statistics (62-XX); Numerical analysis (65-XX)

VMD

Software Authors:   Andrew Dalke, William Humphrey, Klaus Schulten
Referenced in: 75 Publications (1999–2023)
Related Software: NAMD; Gromacs; CHARMM; PyMOL; RasMol; APBS; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

Ptolemy

Software Authors:   Johan Eker, Jörn W. Janneck, Edward A. Lee, Jie Liu, Xiaojun Liu, Jozsef Ludvig, Stephen Neuendorffer, Sonia Sachs, Yuhong Xiong
Referenced in: 64 Publications (1995–2022)
Related Software: Metropolis; Simulink; StateFlow; Esterel; SIGNAL; Reo; …
Main Fields: Mathematical logic and foundations (03-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

ABAQUS/Explicit

Software Authors:   Dassault Systèmes
Referenced in: 78 Publications (1997–2022)
Related Software: ABAQUS; ABAQUS/Standard; UMAT; VUMAT; LS-DYNA; FLAC; …
Main Fields: Numerical analysis (65-XX); Mechanics of particles and systems (70-XX); Mechanics of deformable solids (74-XX)

FLASH

Software Authors:   B. Fryxell, K. Olson, P. Ricker, F. X. Timmes, M. Zingale, D. Q. Lamb, P. Macneice, R. Rosner, J. W. Rosner, J. W. Truran, H. Tufo
Referenced in: 63 Publications (2001–2022)
Related Software: PARAMESH; HE-E1GODF; CASTRO; HLLE; Chombo; RAMSES; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

OMNet++

Software Authors:   András Varga
Referenced in: 33 Publications (2001–2021)
Related Software: ns-2; Chord; GloMoSim; Gurobi; SSFNet; ns-3; …
Main Fields: Probability theory and stochastic processes (60-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

Dymola

Software Authors:   Dassault Systèmes
Referenced in: 51 Publications (1998–2022)
Related Software: Modelica; OpenModelica; Matlab; JModelica; gPROMS; DASSL; …
Main Fields: Ordinary differential equations (34-XX); Numerical analysis (65-XX); Computer science (68-XX)

GiD

Software Authors:   R Ribó, MA de Riera Pasenau, E Escolano; CIMNE
Referenced in: 55 Publications (2000–2022)
Related Software: COMET; deal.ii; ParaView; PETSc; FreeFem++; FEniCS; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

Krill herd

Software Authors:   Gandomi, Amir Hossein; Alavi, Amir Hossein
Referenced in: 50 Publications (2012–2022)
Related Software: GWO; ABC; WOA; GSA; SSA; CEC 13; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

Quantum Espresso

Software Authors:   Giannozzi, P., Baroni, S., Bonini, N., Calandra, M., Car, R., Cavazzoni, C., Ceresoli, D, et al.
Referenced in: 42 Publications (2010–2022)
Related Software: ABINIT; lobpcg.m; LAPACK; WIEN2k; Wannier90; CheFSI; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

Code_Saturne

Software Authors:   S. Benhamadouche; Archambeau, F., Méchitoua, N., Sazik, M.
Referenced in: 48 Publications (2004–2022)
Related Software: OpenFOAM; Gmsh; ParaView; Code_Aster; Matlab; MUMPS; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

GridSim

Software Authors:   Buyya, Rajkumar; Murshed, Manzur
Referenced in: 26 Publications (2002–2020)
Related Software: OptorSim; Nimrod/G; SIMGRID; Globus Toolkit; MicroGrid; GRID Infoware; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

KronFit

Software Authors:   Leskovec, Jure; Chakrabarti, Deepayan; Kleinberg, Jon; Faloutsos, Christos; Ghahramani, Zoubin
Referenced in: 47 Publications (2010–2022)
Related Software: SNAP; PRMLT; plfit; ANF; WEKA; HysterSoft; …
Main Fields: Combinatorics (05-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

GEOCLAW

Software Authors:   M. J. Berger, D. L. George, R. J. LeVeque, K. M. Mandli
Referenced in: 43 Publications (2011–2022)
Related Software: AMRCLAW; CLAWPACK; ADCIRC; PARAMESH; HE-E1GODF; HLLE; …
Main Fields: Partial differential equations (35-XX); Statistics (62-XX); Numerical analysis (65-XX)

VPLAN

Software Authors:   Stefan Körkel
Referenced in: 43 Publications (2000–2022)
Related Software: Ipopt; SNOPT; Matlab; qpOASES; ADIFOR; LAPACK; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Statistics (62-XX); Numerical analysis (65-XX)

Uppaal2k

Software Authors:   Kim G. Larsen, Wang Yi, Paul Pettersson, Alexandre David, Brian Nielsen, Arne Skou, John Håkansson, Jacob Illum Rasmussen, Pavel Krcál, Ulrik Larsen, Marius Mikucionis, Leonid Mokrushin
Referenced in: 38 Publications (2000–2017)
Related Software: Uppaal; Kronos; HyTech; PRISM; SPIN; Rabbit; …
Main Fields: Mathematical logic and foundations (03-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

GreatSPN 1.7

Software Authors:   Chiola, G.; Franceschinis, G.; Gaeta, R.; Ribaudo, M.
Referenced in: 38 Publications (1995–2012)
Related Software: GreatSPN; SPNP; PEPA; CADP; PRISM; Möbius; …
Main Fields: Probability theory and stochastic processes (60-XX); Numerical analysis (65-XX); Computer science (68-XX)

MBSPACK

Software Authors:   Simeon, Bernd
Referenced in: 41 Publications (1995–2018)
Related Software: RODAS; MEXX; DASSL; Matlab; GELDA; MBSSIM; …
Main Fields: Ordinary differential equations (34-XX); Partial differential equations (35-XX); Numerical analysis (65-XX)

ROMS

Software Authors:   Haidvogel, D. B.; Arango, H.; Budgell, W. P.; Cornuelle, B. D.; Curchitser, E.; Di Lorenzo, E.; Fennel, K.; Geyer, W. R.; Hermann, A. J.; Lanerolle, L.; Levin, J.; McWilliams, J. C.; Miller, A. J.; Moore, A. M.; Powell, T. M.; Shchepetkin, A. F.; Sherwood, C. R.; Signell, R. P.; Warner, J. C.; Wilkin, J.
Referenced in: 39 Publications (2008–2022)
Related Software: EnKF; MPAS-Ocean; MIKE; SWAN; TAF; Exshall; …
Main Fields: Partial differential equations (35-XX); Statistics (62-XX); Numerical analysis (65-XX)

SSS

Software Authors:   Hans, Chris; Dobra, Adrian; West, Mike
Referenced in: 39 Publications (2007–2022)
Related Software: EMVS; glmnet; BayesDA; EBayesThresh; glasso; R; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)

SINTEF

Software Authors:   Hasle, Geir (ed.); Lie, Knut-Andreas (ed.); Quak, Ewald (ed.)
Referenced in: 37 Publications (2007–2022)
Related Software: Matlab; VRP; CPLEX; Cython; Plotly; Matplotlib; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

k-Wave

Software Authors:   Bradley E. Treeby; B. T. Cox
Referenced in: 34 Publications (2010–2022)
Related Software: U-Net; Matlab; FASTA; UNLocBoX; DeepAdverserialRegulariser; NETT; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

MONACO

Software Authors:   –
Referenced in: 33 Publications (1996–2020)
Related Software: SMILE; dsmcFoam; CUDA; NOISETTE; Nesvetay; FlowModellium; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

OSIRIS

Software Authors:   Fonseca, R.A.; Silva, L.O.; Tsung, F.S.; Decyk, V.K.; Lu, W.; Ren, C.; Mori, W.B.; Deng, S.; Lee, S.; Katsouleas, T.; Adam, J.C.
Referenced in: 33 Publications (2002–2022)
Related Software: QUICKPIC; VORPAL; PSC; UPIC-EMMA; OOPIC; MPI; …
Main Fields: Numerical analysis (65-XX); Fluid mechanics (76-XX); Optics, electromagnetic theory (78-XX)

COUPLEX

Software Authors:   Bourgeat, A.; Kern, M.; Schumacher, S.; Talandier, J.
Referenced in: 33 Publications (2004–2022)
Related Software: UG; HYDROGEOCHEM; JHomogenizer; PhreeqcRM; PHREEQC; MoMaS; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

SMART_

Software Authors:   Ciardo, G.; Jones, R.L.; Miner, A.S.; Siminiceanu, R.
Referenced in: 23 Publications (2000–2018)
Related Software: SPIN; PRISM; NuSMV; Möbius; PEPA; MRMC; …
Main Fields: Mathematical logic and foundations (03-XX); Numerical analysis (65-XX); Computer science (68-XX)

AToM3

Software Authors:   de Lara, Juan; Vangheluwe, Hans
Referenced in: 13 Publications (2002–2013)
Related Software: AGG; VIATRA2; DiaGen; PROGRES; VPM; SMART_; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

TimeNET

Software Authors:   German, Reinhard; Kelling, Christian; Zimmermann, Armin; Hommel, Günter
Referenced in: 28 Publications (1995–2022)
Related Software: GreatSPN; SPNP; GreatSPN 1.7; ESP; SHARPE; SPNica; …
Main Fields: Probability theory and stochastic processes (60-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

SUPG

Software Authors:   Kler, Pablo A.; Dalcin, Lisandro D.; Paz, Rodrigo R.; Tezduyar, Tayfun E.
Referenced in: 31 Publications (2012–2021)
Related Software: XFOIL; libMesh
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

FARSITE

Software Authors:   Finney MA; U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station
Referenced in: 24 Publications (2008–2022)
Related Software: FlamMap; Multivac; Prometheus; WRF-SFIRE; G-LiHT; spNNGP; …
Main Fields: Partial differential equations (35-XX); Statistics (62-XX); Numerical analysis (65-XX)

MuJoCo

Software Authors:   E. Todorov, T. Erez, Y. Tassa
Referenced in: 23 Publications (2016–2022)
Related Software: OpenAI Gym; TensorFlow; Adam; PyTorch; GitHub; Python; …
Main Fields: Computer science (68-XX); Mechanics of particles and systems (70-XX); Operations research, mathematical programming (90-XX)

CloudSim

Software Authors:   Rodrigo N. Calheiros, Rajiv Ranjan, Cesar A. F. De Rose, Rajkumar Buyya
Referenced in: 17 Publications (2012–2022)
Related Software: GridSim; pMapper; Amazon EC2; Eucalyptus; OpenNebula; Satin; …
Main Fields: Probability theory and stochastic processes (60-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

OpenModelica

Software Authors:   Fritzson, Peter
Referenced in: 24 Publications (2008–2022)
Related Software: Modelica; Dymola; JModelica; Matlab; GitHub; HSL; …
Main Fields: Ordinary differential equations (34-XX); Numerical analysis (65-XX); Computer science (68-XX)

SUMO

Software Authors:   Ghent University; Gorissen, Dirk; Couckuyt, Ivo; Demeester, Piet; Dhaene, Tom; Crombecq, Karel
Referenced in: 25 Publications (2010–2022)
Related Software: EGO; ooDACE; Matlab; SMS-EMOA; SPEA2; GitHub; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Optics, electromagnetic theory (78-XX)

URDME

Software Authors:   Drawert, B., Engblom, S.,Hellander, A.
Referenced in: 24 Publications (2009–2022)
Related Software: MesoRD; STEPS; Smoldyn; ReaDDy; Wavos; PySB; …
Main Fields: Partial differential equations (35-XX); Probability theory and stochastic processes (60-XX); Numerical analysis (65-XX)

GNA

Software Authors:   Hidde de Jong, Johannes Geiselmann, Céline Hernandez, Michel Page
Referenced in: 25 Publications (2006–2021)
Related Software: BIOCHAM; Ginsim; Celldesigner; KEGG; RoVerGeNe; DiVinE; …
Main Fields: Mathematical logic and foundations (03-XX); Ordinary differential equations (34-XX); Computer science (68-XX)

MoMaS

Software Authors:   Carrayrou, Jérôme; Kern, Michel; Knabner, Peter
Referenced in: 26 Publications (2010–2022)
Related Software: HYTEC; MIN3P; HYDROGEOCHEM; SPECY; PhreeqcRM; PHREEQC; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

CompuCell3D

Software Authors:   Popławski, Nikodem J.; Shirinifard, Abbas; Swat, Maciej; Glazier, James A.
Referenced in: 24 Publications (2008–2022)
Related Software: PhysiCell; Chaste; EmbryoMaker; ParaView; CellSys; Microvessel Chaste; …
Main Fields: Partial differential equations (35-XX); Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX)

eRm

Software Authors:   Patrick Mair, Reinhold Hatzinger, Marco J. Maier
Referenced in: 10 Publications (2012–2020)
Related Software: R; ltm; mirt; lme4; SAS; Mcmcpack; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

Möbius

Software Authors:   William H. Sanders
Referenced in: 19 Publications (2001–2021)
Related Software: SMART_; PEPA; SHARPE; PRISM; GreatSPN 1.7; SPNP; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Computer science (68-XX)

FLagSHyP

Software Authors:   Bonet, Javier; Gil, Antonio J.; Wood, Richard D.
Referenced in: 24 Publications (2016–2022)
Related Software: Gmsh; HYPLAS; ABAQUS; Matlab; PRMLT; PMTK; …
Main Fields: Differential geometry (53-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

GASP IV

Software Authors:   Pritsker, A. Alan B.
Referenced in: 24 Publications (1974–2006)
Related Software: SIMSCRIPT; Simula 67; DYNAMO; Ada95; LISP; CLOS
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

MCELL

Software Authors:   Bartol, T.; Stiles, J.
Referenced in: 23 Publications (2002–2021)
Related Software: Smoldyn; GEPASI; Ninf-G/MPI; E-CELL; MesoRD; Gromacs; …
Main Fields: Partial differential equations (35-XX); Probability theory and stochastic processes (60-XX); Numerical analysis (65-XX)

PERMIX

Software Authors:   Talebi, Hossein; Silani, Mohammad; Bordas, Stéphane P.A.; Kerfriden, Pierre; Rabczuk, Timon
Referenced in: 24 Publications (2014–2022)
Related Software: XFEM; CutFEM; FEniCS; Matlab; ABAQUS; hypre; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

DEDiscover

Software Authors:   University of Rochester’s Center for Biodefense Immune Modeling (CBIM)
Referenced in: 22 Publications (2011–2022)
Related Software: SemiPar; R; fda (R); smfsb; deSolve; System Identification Toolbox; …
Main Fields: Ordinary differential equations (34-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

E-CELL

Software Authors:   M Tomita, K Hashimoto, K Takahashi, T S Shimizu,Y Matsuzaki ,F Miyoshi, K Saito S Tanida,K Yugi,J C Venter; C A Hutchison
Referenced in: 18 Publications (2003–2019)
Related Software: GEPASI; KEGG; Virtual Cell; SCAMP; COPASI; MCELL; …
Main Fields: Mathematical logic and foundations (03-XX); Probability theory and stochastic processes (60-XX); Numerical analysis (65-XX)

Blender

Software Authors:   Blender Foundation
Referenced in: 19 Publications (2009–2022)
Related Software: CGAL; Python; NumPy; FreeCAD; SciPy; Gmsh; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

FlowLab

Software Authors:   LaRoche, R.D.; Hutchings, B.J.; Muralikrishnan, R.
Referenced in: 22 Publications (2008–2021)
Related Software: OpenFOAM; ParaView; GIMP; Gmsh; FLUENT; AVL; …
Main Fields: General and overarching topics; collections (00-XX); Partial differential equations (35-XX); Numerical analysis (65-XX)

Repast Suite

Software Authors:   North, M.J., N.T. Collier, J. Ozik, E. Tatara, M. Altaweel, C.M. Macal, M. Bragen, P. Sydelko
Referenced in: 15 Publications (2008–2020)
Related Software: MASON; NetLogo; Py2NetLogo; Py4J; Jupyter; BehaviorSearch; …
Main Fields: Computer science (68-XX); Operations research, mathematical programming (90-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

SCIRun

Software Authors:   Parker, Steven G.; Weinstein, David M.; Johnson, Christopher R.
Referenced in: 16 Publications (1997–2012)
Related Software: Diffpack; LAPACK; Mathematica; Uintah; VTK; ELLPACK; …
Main Fields: General and overarching topics; collections (00-XX); Numerical analysis (65-XX); Computer science (68-XX)

Maya

Software Authors:   Autodesk
Referenced in: 13 Publications (1999–2020)
Related Software: Mathematica; Rhinoceros; ScanNet; SceneNN; ShapeNet; Thingi10K; …
Main Fields: General and overarching topics; collections (00-XX); Numerical analysis (65-XX); Computer science (68-XX)

TMSmesh

Software Authors:   Chen M., Lu B.
Referenced in: 21 Publications (2013–2020)
Related Software: APBS; MIBPB; tabipb; TABI; TetGen; AFMPB; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

Chrono

Software Authors:   Tasora, Alessandro; Serban, Radu; Mazhar, Hammad; Pazouki, Arman; Melanz, Daniel; Fleischmann, Jonathan; Taylor, Michael; Sugiyama, Hiroyuki; Negrut, Dan
Referenced in: 20 Publications (2015–2022)
Related Software: Meschach; GitHub; RODAS; DualSPHysics; CUDA; TFOCS; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Mechanics of particles and systems (70-XX)

PMTBR

Software Authors:   Phillips, Joel R.; Zhu, Zhenhai; Siveira, Miguel
Referenced in: 19 Publications (2007–2022)
Related Software: Loewner; redbKIT; emgr; mctoolbox; SparseRC; Sparse Grid Interpolation; …
Main Fields: Ordinary differential equations (34-XX); Numerical analysis (65-XX); Optics, electromagnetic theory (78-XX)

PyDSTool

Software Authors:   Clewley RH, Sherwood WE, LaMar MD, Guckenheimer JM
Referenced in: 19 Publications (2012–2022)
Related Software: MATCONT; Matlab; AUTO; XPPAUT; DDE-BIFTOOL; COCO; …
Main Fields: Ordinary differential equations (34-XX); Partial differential equations (35-XX); Dynamical systems and ergodic theory (37-XX)

Voom

Software Authors:   Law, C. W., Chen, Y., Shi, W., Smyth, G. K.
Referenced in: 18 Publications (2015–2021)
Related Software: edgeR; Bioconductor; R; limma; DEseq; DESeq2; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

NX

Software Authors:   Siemens
Referenced in: 17 Publications (2008–2022)
Related Software: Triangle; NASTRAN; BLAS; Mimics; ABAQUS/Standard; Q-MAT; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

SimVascular

Software Authors:   Updegrove, A.; Wilson, N.M.; Merkow, J.; Lan, H.; Marsden, A.L.; Shadden, S.C.
Referenced in: 18 Publications (2017–2022)
Related Software: TetGen; PETSc; hypre; VTK; Gmsh; svSolver; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

STEPS

Software Authors:   Iain Hepburn, Weiliang Chen, Stefan Wils, Erik De Schutter
Referenced in: 16 Publications (2014–2019)
Related Software: MesoRD; URDME; Smoldyn; PySB; ReaDDy; FEniCS; …
Main Fields: Partial differential equations (35-XX); Probability theory and stochastic processes (60-XX); Numerical analysis (65-XX)

UDEC

Software Authors:   Itasca Consulting Group, Inc
Referenced in: 18 Publications (1996–2021)
Related Software: Y-Geo; PFC; Mathematica; TOUGH-FLAC; FLAC3D; Dips; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Geophysics (86-XX)

Ecosim

Software Authors:   Christensen V, Walters CJ.
Referenced in: 17 Publications (2002–2022)
Related Software: Ecopath with Ecosim; Ecopath II; xsample; Ucinet; ranger; darch; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

CRCP

Software Authors:   Wojciech W Grabowski; Piotr K Smolarkiewicz
Referenced in: 16 Publications (1999–2021)
Related Software: EquationFreeGit; GitHub; Matlab; ODTLES; Expint; NICAM; …
Main Fields: Dynamical systems and ergodic theory (37-XX); Statistics (62-XX); Numerical analysis (65-XX)

Ecopath with Ecosim

Software Authors:   ECOPATH; Christensen, V., Walters, C., Pauly, D.
Referenced in: 16 Publications (2002–2022)
Related Software: Ecosim; Ecopath II; xsample; Ucinet; ranger; darch; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

SmartMobile

Software Authors:   Auer, Ekaterina; Luther, Wolfram
Referenced in: 14 Publications (2008–2014)
Related Software: ValEncIA-IVP; FADBAD++; ValEncIA; Cosy; MOBILE; PROFIL/BIAS; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)

ESTIMA

Software Authors:   Jategaonkar, Ravindra; Thielecke, Frank
Referenced in: 15 Publications (1993–2010)
Related Software: R; MIM; TETRAD; polymake; AS 176; KernSmooth
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

MPTinR

Software Authors:   Henrik Singmann; David Kellen; Quentin Gronau; Christian Mueller; Akhil S Bhel
Referenced in: 15 Publications (2014–2020)
Related Software: Multitree; TreeBUGS; R; JAGS; BayesDA; Rcpp; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

Open CASCADE

Software Authors:   –
Referenced in: 15 Publications (2007–2021)
Related Software: Intel TBB; Trilinos; Gmsh; WorkStream; muparser; p4est; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

qrcm

Software Authors:   Frumento, Paolo; Bottai, Matteo
Referenced in: 15 Publications (2016–2022)
Related Software: R; quantreg; clustEff; qrcmNP; RobStatTM; LMOMENTS; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

E4

Software Authors:   Jose Manuel Casals, Alfredo Garcia-Hiernaux, Miguel Jerez, Sonia Sotoca, A. Alexandre Trindade
Referenced in: 14 Publications (1997–2021)
Related Software: Matlab; STAMP; MIDAS Regressions; gretl
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Statistics (62-XX); Numerical analysis (65-XX)

TOUGH-FLAC

Software Authors:   Jonny Rutqvist
Referenced in: 13 Publications (2015–2022)
Related Software: OpenGeoSys; TOUGH; DuMuX; FLAC3D; DUNE; HYPLAS; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

OpenSees

Software Authors:   Mazzoni, S.; Mckenna, F.; Fenves, G.
Referenced in: 11 Publications (2009–2021)
Related Software: SAP2000; LS-DYNA; ABAQUS; VTK; DYANAS; MSBridge; …
Main Fields: General and overarching topics; collections (00-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

Cimlib

Software Authors:   Digonnet H, Silva L, Coupez T
Referenced in: 12 Publications (2009–2021)
Related Software: FELSOS; PROST; Gmsh; AlexNet; Stable Baselines; ImageNet; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

COM-MAT-FAIL

Software Authors:   Oliver, J.; Dias, I.F.; Huespe, A.E.
Referenced in: 12 Publications (2014–2019)
Related Software:
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

MUI

Software Authors:   Tang, Yu-Hang; Kudo, Shuhei; Bian, Xin; Li, Zhen; Karniadakis, George Em
Referenced in: 11 Publications (2015–2021)
Related Software: preCICE; AdResS; OpenFOAM; CEDRE; MpCCI; pyprecice; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

NFsim

Software Authors:   Sneddon MW, Faeder JR, Emonet T
Referenced in: 11 Publications (2011–2021)
Related Software: BioNetGen; GitHub; LBS; Bio-PEPA; ERODE; BIOCHAM; …
Main Fields: Ordinary differential equations (34-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

MDC-ELLIPSOIDs

Software Authors:   D.S. Lopes, M.T. Silva, J.A. Ambrósio, P. Flores
Referenced in: 11 Publications (2010–2022)
Related Software: CONTACT; LIGGGHTS; ABAQUS; Mathematica; MATLAB ODE suite; ode23s; …
Main Fields: Numerical analysis (65-XX); Mechanics of particles and systems (70-XX); Mechanics of deformable solids (74-XX)

MicroGrid

Software Authors:   H. J. Song, X. Liu, D. Jakobsen, R. Bhagwan, X. Zhang, K. Taura, A. Chien; Xia, Huaxia; Chien, Andrew A.
Referenced in: 6 Publications (2001–2009)
Related Software: GridSim; Globus Toolkit; SIMGRID; OptorSim; GrADS; ScaLAPACK; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

ooDACE

Software Authors:   Couckuyt, Ivo; Dhaene, Tom; Demeester, Piet
Referenced in: 11 Publications (2014–2021)
Related Software: EGO; SUMO; DACE; DiceKriging; GPML; SMS-EMOA; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Statistics (62-XX); Fluid mechanics (76-XX)

AnyBody

Software Authors:   Damsgaard, M., Rasmussen, J., Christensen, S.T., Surma, E., de Zee, M
Referenced in: 6 Publications (2015–2020)
Related Software: OpenSim; Biomechanical ToolKit; Matlab; CusToM; SPACAR; BCCG+FAI; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Mechanics of particles and systems (70-XX)

Bio-SPICE

Software Authors:   Garvey TD, Lincoln P, Pedersen CJ et al
Referenced in: 8 Publications (2005–2014)
Related Software: COPASI; BioModels; Taverna; GEPASI; KEGG; Celldesigner; …
Main Fields: History and biography (01-XX); Numerical analysis (65-XX); Computer science (68-XX)

Sim.DiffProc

Software Authors:   Arsalane Chouaib Guidoum, Kamal Boukhetala
Referenced in: 8 Publications (2016–2022)
Related Software: DiffProc; R; YUIMA; knitr; DiffusionRimp; sde; …
Main Fields: Dynamical systems and ergodic theory (37-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

Simmetrix

Software Authors:   Simmetrix Inc.
Referenced in: 9 Publications (2009–2020)
Related Software: SIERRA; TetGen; PETSc; GitHub; Trilinos; GRUMMP; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

SpiCO

Software Authors:   Kuttler, Céline; Lhoussaine, Cédric; Niehren, Joachim
Referenced in: 10 Publications (2007–2020)
Related Software: Bio-PEPA; BioNetGen; BlenX; PEPA; Dizzy; StochPy; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

US3D

Software Authors:   Graham V. Candler, Heath B. Johnson, Ioannis Nompelis, Pramod K. Subbareddy, Travis W. Drayna, Vladimyr Gidzak, Michael D. Barnhardt
Referenced in: 10 Publications (2011–2022)
Related Software: Mutation++; UQLab; DACE; SMILE; FlowModellium; MONACO; …
Main Fields: Partial differential equations (35-XX); Statistics (62-XX); Numerical analysis (65-XX)

ARENA

Software Authors:   Rockwell Automation, Inc
Referenced in: 9 Publications (2002–2018)
Related Software: Matlab; SPSS; DFBOX_IMPR; DFLBOX; DFLGEN; OptQuest; …
Main Fields: General and overarching topics; collections (00-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

CellSys

Software Authors:   Hoehme S, Drasdo D
Referenced in: 8 Publications (2012–2021)
Related Software: Chaste; Biocellion; PhysiCell; Morpheus; CellML; SciPy; …
Main Fields: Partial differential equations (35-XX); Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX)

CrystallBall

Software Authors:   ORACLE; Charnes, John
Referenced in: 8 Publications (2005–2021)
Related Software: Excel; OptQuest; AMPL; LINGO
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

StochPy

Software Authors:   Maarleveld, T. R.; Olivier, B. G.; Bruggeman, F. J.
Referenced in: 8 Publications (2017–2022)
Related Software: COPASI; BioNetGen; StochKit2; JuMP; libSBML; DifferentialEquations.jl; …
Main Fields: Ordinary differential equations (34-XX); Approximations and expansions (41-XX); Probability theory and stochastic processes (60-XX)