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Found 41 Software Packages (Results 1–41)

RSIR

Software Authors:   Zhong, W.; Zeng, P.; Ma, P.; Liu, J. S.; Zhu, Y.
Referenced in: 17 Publications (2008–2022)
Related Software: R; edrGraphicalTools; ElemStatLearn; fda (R); variables; VSURF; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

MEME

Software Authors:   Bailey, T.L., Williams, N., Misleh, C., Li, W.W.
Referenced in: 9 Publications (2011–2018)
Related Software: BLAT; R; DIALIGN; ANNOVAR; KEGG; WEKA; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)

PhyME

Software Authors:   Saurabh Sinha, Mathieu Blanchette, Martin Tompa
Referenced in: 5 Publications (2006–2013)
Related Software: BioProspector; ClustalW; fastDNAml; TRANSFAC; CisModule; TileMap; …
Main Fields: History and biography (01-XX); Statistics (62-XX); Numerical analysis (65-XX)

BioOptimizer

Software Authors:   S.T. Jensen, J.S. Liu
Referenced in: 4 Publications (2006–2014)
Related Software: GAME; STAMP; TRANSFAC; BioProspector; UniProt; WebGestalt; …
Main Fields: General and overarching topics; collections (00-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

FIMO

Software Authors:   Grant CE, Bailey TL, Noble WS
Referenced in: 5 Publications (2016–2019)
Related Software: KEGG; R; UniPROBE; UniProt; JASPAR; BEDTools; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Statistics (62-XX)

STAMP

Software Authors:   –
Referenced in: 2 Publications (2014–2020)
Related Software: BioOptimizer; GAME; TRANSFAC; R; MODA; Kavosh; …
Main Fields: General and overarching topics; collections (00-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

CisModule

Software Authors:   Zhou, Q.; Wong, W.H
Referenced in: 4 Publications (2006–2015)
Related Software: BioProspector; TRANSFAC; MCFDR; R; tsbridge; CATS; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Statistical mechanics, structure of matter (82-XX)

MODA

Software Authors:   Omidi S, Schreiber F, Masoudi-Nejad A
Referenced in: 3 Publications (2014–2020)
Related Software: Kavosh; NeMoFinder; FANMOD; Graemlin; gSpan; MultiPhyl; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

NeMoFinder

Software Authors:   Chen J, Hsu M, Lee L, Ng SK
Referenced in: 5 Publications (2009–2020)
Related Software: MODA; Kavosh; FANMOD; Graemlin; KEGG; gSpan; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

GAME

Software Authors:   Z. Wei, S.T. Jensen
Referenced in: 1 Publication (2014)
Related Software: BioOptimizer; STAMP; TRANSFAC; BioProspector; UniProt; WebGestalt; …
Main Fields: General and overarching topics; collections (00-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

NestedMICA

Software Authors:   Mutlu Doğruel; Thomas A Down; Tim JP Hubbard
Referenced in: 1 Publication (2010)
Related Software: TRANSFAC; JASPAR; Seeder; FISim; STAMP; randomForest; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

ParaMEME

Software Authors:   Grundy WN, Bailey TL, Elkan CP
Referenced in: 3 Publications (2002–2015)
Related Software: MODA; MultiPhyl; PathBLAST; Graemlin; MAVisto; Kavosh; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Numerical analysis (65-XX)

STUMPY

Software Authors:   Sean M. Law
Referenced in: 1 Publication (2020)
Related Software: Python; hmmlearn; Statsmodels; tslearn; pyts; Seglearn; …
Main Fields: Computer science (68-XX)

Varun

Software Authors:   A. Apostolico, M. Comin, L. Parida
Referenced in: 4 Publications (2013–2018)
Related Software: MADMX; WordSpy; MotifMiner; WebMOTIFS; fREDUCE; SPACER; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

WebMOTIFS

Software Authors:   Katherine A. Romer, Guy-Richard Kayombya, Ernest Fraenkel
Referenced in: 2 Publications (2013)
Related Software: PhyME; WordSpy; MotifMiner; fREDUCE; SPACER; ARGO; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

DREME

Software Authors:   Bailey TL
Referenced in: 2 Publications (2016–2017)
Related Software: DECOD; SeedHam; GitHub; JASPAR; TRANSFAC; Galaxy; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

KiWi

Software Authors:   Obi L. Griffith, Byron J. Gao, Mikhail Bilenky, Yuliya Prichyna, Martin Ester, Steven J.M. Jones
Referenced in: 1 Publication (2018)
Related Software: CPLEX
Main Fields: Operations research, mathematical programming (90-XX)

PePr

Software Authors:   Zhang, Y.; Lin, Y.-H.; Johnson, T. D. Rozek; Sartor, M. A.
Referenced in: 2 Publications (2018–2021)
Related Software: intePareto; iClusterPlus; BiSeq; MethylSeekR; rGREAT; rGADEM; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

SCRIMP++

Software Authors:   Y. Zhu, C.-c. M. Yeh, Z. Zimmerman, K. Kamgar, E. Keogh
Referenced in: 1 Publication (2021)
Related Software: R; tsmp; CRAN; UCR Suite; UCI-ml
Main Fields: Statistics (62-XX)

Seeder

Software Authors:   François Fauteux, Mathieu Blanchette, Martina V. Strömvik
Referenced in: 1 Publication (2010)
Related Software: NestedMICA
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

TFBSTools

Software Authors:   Tan, Ge; Lenhard, Boris
Referenced in: 1 Publication (2021)
Related Software: Bioconductor; R; plot2DO; Travis CI; VplotR; intePareto; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

ChIP-PaM

Software Authors:   Wu, S., Wang, J., Zhao, W., Pounds, S., Cheng, C
Referenced in: 1 Publication (2015)
Related Software: WaveSeq; qvalue
Main Fields: Harmonic analysis on Euclidean spaces (42-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

Cistrome

Software Authors:   Liu T1, Ortiz JA, Taing L, Meyer CA, Lee B, Zhang Y, Shin H, Wong SS, Ma J, Lei Y, Pape UJ, Poidinger M, Chen Y, Yeung K, Brown M, Turpaz Y, Liu XS
Referenced in: 1 Publication (2016)
Related Software: itsmr; FastQC; ODoSE; Nebula; ITSM2000; R
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX)

CPMD

Software Authors:   Mohammad, Yasser; Ohmoto, Yoshimasa; Nishida, Toyoaki
Referenced in: 0 Publications
Related Software:
Main Fields:

DECOD

Software Authors:   Peter Huggins, Shan Zhong, Idit Shiff, Rachel Beckerman, Oleg Laptenko, Carol Prives, Marcel H. Schulz, Itamar Simon, Ziv Bar-Joseph
Referenced in: 1 Publication (2017)
Related Software: SeedHam; GitHub; JASPAR; DREME; TRANSFAC
Main Fields: Biology and other natural sciences (92-XX)

DRIMust

Software Authors:   Leibovich L, et al.
Referenced in: 1 Publication (2019)
Related Software: Methylation; GitHub; Adam
Main Fields: Biology and other natural sciences (92-XX)

FastMotif

Software Authors:   Nicoló Colombo, Nikos Vlassis
Referenced in: 1 Publication (2018)
Related Software: STRUCTURE; bfa; topicmodels; UCI-ml
Main Fields: Statistics (62-XX)

G4Catchall

Software Authors:   Doluca, Osman
Referenced in: 1 Publication (2019)
Related Software: Quadfinder; QGRS-H Predictor; QGRS mapper; pqsfinder; G4Hunter; GitHub
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

GWOMF

Software Authors:   Hashim, F.; Mabrouk, M. S.; Al-Atabany, W.
Referenced in: 1 Publication (2022)
Related Software: WOA; Honey badger algorithm
Main Fields: Numerical analysis (65-XX); Operations research, mathematical programming (90-XX)

jmotif

Software Authors:   Pavel Senin
Referenced in: 0 Publications
Related Software: TSMining; Rcpp; R; TSrepr
Main Fields:

MEME-LaB

Software Authors:   Brown P, Baxter L, Hickman R et al
Referenced in: 1 Publication (2017)
Related Software: SplitsTree; MrBayes; Tracer; MulRF; iGTP; TOPAL; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

MotifCM

Software Authors:   Liu, Li-Fang; Jiao, Li-Cheng
Referenced in: 1 Publication (2010)
Related Software: JASPAR; TRANSFAC; BioProspector
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

MPBind

Software Authors:   Jiang, P.; Meyer, S.; Hou, Z.; Propson, N. E.; Soh, H. T.; Thomson, J. A.; Stewart, R.
Referenced in: 1 Publication (2017)
Related Software:
Main Fields: Biology and other natural sciences (92-XX)

Nebula

Software Authors:   Valentina Boeva, Alban Lermine, Camille Barette, Christel Guillouf, Emmanuel Barillot
Referenced in: 1 Publication (2016)
Related Software: itsmr; FastQC; ODoSE; Cistrome; ITSM2000; R
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX)

RecMotif

Software Authors:   Sun, H. Q.; Low, M. Y.H.; Hsu, W. J.; Rajapakse, J. C.
Referenced in: 1 Publication (2013)
Related Software: RISOTTO; PMS5
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

rGADEM

Software Authors:   Droit A, Gottardo R, Robertson G, Li L
Referenced in: 1 Publication (2021)
Related Software: intePareto; iClusterPlus; BiSeq; MethylSeekR; rGREAT; Trim Galore; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

SegHMC

Software Authors:   Guo, Haitao; Huo, Hongwei; Yu, Qiang
Referenced in: 1 Publication (2016)
Related Software:
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

Tmod

Software Authors:   Sun, Hanchang; Yuan, Yuan; Wu, Yibo; Liu, Hui; Liu, Jun S.; Xie, Hongwei
Referenced in: 0 Publications
Related Software:
Main Fields:

TSMining

Software Authors:   Cheng Fan
Referenced in: 0 Publications
Related Software: jmotif; Rcpp; R; TSrepr
Main Fields:

WideDTA

Software Authors:   Hakime Öztürk, Elif Ozkirimli, Arzucan Özgür
Referenced in: 1 Publication (2022)
Related Software: DeepPurpose; DeepDTA
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

PMS6MC

Software Authors:   Bandyopadhyay, Shibdas; Sahni, Sartaj; Rajasekaran, Sanguthevar
Referenced in: 0 Publications
Related Software:
Main Fields: