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Found 133 Software Packages (Results 1–100)

GATK

Software Authors:   A. McKenna, M. Hanna, E. Banks et al.
Referenced in: 16 Publications (2012–2021)
Related Software: Samtools; Trimmomatic; R; BWA; Bowtie 2; FastQC; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

SHRiMP

Software Authors:   Rumble SM, Lacroute P, Dalca AV, Fiume M, Sidow A, Brudno M
Referenced in: 10 Publications (2010–2017)
Related Software: PatternHunter; Soap; BWA; BFAST; BLAT; ZOOM; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Number theory (11-XX)

BEDTools

Software Authors:   Quinlan AR, Hall IM
Referenced in: 7 Publications (2012–2019)
Related Software: R; Soap; IGV; FastQC; Samtools; edgeR; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Computer science (68-XX)

CNV-seq

Software Authors:   C. Xie, M.T. Tammi
Referenced in: 9 Publications (2011–2019)
Related Software: rSW-seq; ReadDepth; R; SQOPT; SeqBBS; PICNIC; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

GAGE

Software Authors:   Salzberg, S.L., Phillippy, A.M., Zimin, A., Puiu, D., Magoc, T., Koren, S., Treangen, T.J., Schatz, M.C., Delcher, A.L., Roberts, M., et al.
Referenced in: 10 Publications (2012–2019)
Related Software: Velvet; SPAdes; SOAPdenovo; ALLPATHS; ABySS; IDBA-UD; …
Main Fields: Combinatorics (05-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

Segmentor3IsBack

Software Authors:   Alice Cleynen, Michel Koskas, Emilie Lebarbier, Guillem Rigaill, Stephane Robin
Referenced in: 5 Publications (2017–2021)
Related Software: changepoint; wbs; R; FDRSeg; stepR; not; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX)

RAST

Software Authors:   Meyer F, Paarmann D, D’Souza M et al
Referenced in: 4 Publications (2012–2019)
Related Software: KEGG; MEGAN; Artemis; BLAST; PROSITE; PSI-BLAST; …
Main Fields: General and overarching topics; collections (00-XX); Probability theory and stochastic processes (60-XX); Computer science (68-XX)

VarScan

Software Authors:   Koboldt DC, Zhang Q, Larson DE, Shen D, McLellan MD, Lin L, Miller CA, Mardis ER, Ding L, Wilson RK
Referenced in: 7 Publications (2012–2019)
Related Software: Samtools; Trimmomatic; GATK; SNVMix; edgeR; mrsFAST; …
Main Fields: General and overarching topics; collections (00-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

BS Seeker

Software Authors:   Chen, P. Y., S. J. Cokus, M. Pellegrini
Referenced in: 6 Publications (2012–2022)
Related Software: BSMAP; Bismark; BSmooth; Bowtie 2; SHRiMP; MethylCoder; …
Main Fields: General and overarching topics; collections (00-XX); Probability theory and stochastic processes (60-XX); Computer science (68-XX)

FindPeaks

Software Authors:   Fejes AP, Robertson G, Bilenky M, et al.
Referenced in: 3 Publications (2012–2013)
Related Software: BayesPeak; KEGG; DEGseq; edgeR; R; TileMap; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

ZOOM

Software Authors:   Hao Lin, Zefeng Zhang, Michael Q. Zhang, Bin Ma, Ming Li
Referenced in: 5 Publications (2010–2018)
Related Software: Soap; SHRiMP; BWA; PatternHunter; CloudBurst; YASS; …
Main Fields: Combinatorics (05-XX); Number theory (11-XX); Computer science (68-XX)

BSMAP

Software Authors:   Xi, Y.; W. Li
Referenced in: 5 Publications (2012–2022)
Related Software: BS Seeker; Bismark; Bowtie 2; SHRiMP; Soap; mrsFAST; …
Main Fields: General and overarching topics; collections (00-XX); Probability theory and stochastic processes (60-XX); Computer science (68-XX)

CloudBurst

Software Authors:   Michael C. Schatz
Referenced in: 2 Publications (2013–2018)
Related Software: Soap; MrsRF; MapReduce; BWA; ZOOM; Crossbow; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

seqCBS

Software Authors:   Jeremy J. Shen, Nancy R. Zhang
Referenced in: 6 Publications (2012–2019)
Related Software: glmnet; SemiPar; Pindel; Delly; unbalhaar; CNV-seq; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Astronomy and astrophysics (85-XX)

ART

Software Authors:   Weichun Huang, Leping Li, Jason R. Myers, Gabor T. Marth
Referenced in: 5 Publications (2017–2022)
Related Software: BWA; Bowtie 2; ABySS; Velvet; Vargas; AStarix; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

featureCounts

Software Authors:   Liao Y, Smyth GK, Shi W
Referenced in: 5 Publications (2016–2018)
Related Software: R; edgeR; Bioconductor; BEDTools; MEDIPS; FastQC; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

FragGeneScan

Software Authors:   Rho M, Tang H, Ye Y
Referenced in: 5 Publications (2012–2022)
Related Software: ClustalW; SPAdes; JBROWSE; InterProScan; MAKER; EasyGene; …
Main Fields: General and overarching topics; collections (00-XX); Probability theory and stochastic processes (60-XX); Operations research, mathematical programming (90-XX)

GRASS

Software Authors:   A.A. Gritsenko, J.F. Nijkamp, M.J.T. Reinders, D. de Ridder
Referenced in: 5 Publications (2015–2021)
Related Software: SCARPA; SOPRA; Bambus 2; BESST; ScaffMatch; Velvet; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

ScaffMatch

Software Authors:   Mandric, I.; Zelikovsky, A.
Referenced in: 4 Publications (2016–2021)
Related Software: BESST; GRASS; Bambus 2; Velvet; SCARPA; SOPRA; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

Trimmomatic

Software Authors:   Anthony M. Bolger, Marc Lohse, Bjoern Usadel
Referenced in: 4 Publications (2017–2021)
Related Software: FastQC; GATK; TopHat; R; VarScan; Samtools; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

MetaSim

Software Authors:   Richter, D.C.; Ott, F.; Auch, A.F.; Schmid, R.; Huson, D.H.
Referenced in: 2 Publications (2017–2018)
Related Software: ONE; BLAST; PSI-BLAST; MEGAN; Pfam; MetaCluster; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

MPSCAN

Software Authors:   E. Rivals, L. Salmela, P. Kiiskinen, P. Kalsi, J. Tarhio
Referenced in: 3 Publications (2010–2012)
Related Software: Iedera; PerM; PASS; BWA; ZOOM; PatMaN; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

PerM

Software Authors:   Y. Chen, T. Souaiaia, T. Chen
Referenced in: 2 Publications (2010–2014)
Related Software: ZOOM; PatternHunter; SHRiMP; Iedera; MPSCAN; PASS; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

RazerS

Software Authors:   Weese, D., Holtgrewe, M., Reinert, K.
Referenced in: 3 Publications (2010–2016)
Related Software: BWA; Bowtie 2; PatternHunter; PASS; ZOOM; PatMaN; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

Readjoiner

Software Authors:   G. Gonnella; S. Kurtz
Referenced in: 4 Publications (2016–2020)
Related Software: essaMEM; SHREC; KABOOM; GtEncseq
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

Snakemake

Software Authors:   Köster, Johannes; Rahmann, Sven
Referenced in: 0 Publications
Related Software: Taverna; Python; ImgLib2; scikit-image; CLIJ; CellProfiler; …
Main Fields:

SNVMix

Software Authors:   Goya, R. et al.
Referenced in: 3 Publications (2012–2018)
Related Software: VarScan; RSEM; STAR; edgeR; Sniper; GlfMultiples; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

countmotif

Software Authors:   Nuel, G.; Delos, V.
Referenced in: 3 Publications (2016–2019)
Related Software: fsaLib; BWA; R
Main Fields: Combinatorics (05-XX); Probability theory and stochastic processes (60-XX); Computer science (68-XX)

IGV

Software Authors:   Thorvaldsdóttir H, Robinson JT, Mesirov JP
Referenced in: 3 Publications (2016–2018)
Related Software: BEDTools; R; FastQC; Samtools; FIMO; BioMart; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

PairClone

Software Authors:   Zhou, T., Müller, P., Sengupta, S., Ji, Y.
Referenced in: 2 Publications (2019–2020)
Related Software: PyClone; TreeClone; PhyloWGS; THetA; BayCount; GitHub; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

PurityEst

Software Authors:   Su, X., Zhang, L., Zhang, J., Meric-Bernstam, F. and Weinstein, J. N.
Referenced in: 3 Publications (2015–2021)
Related Software: BWA; PyClone; PurBayes; TreeClone; SciClone; PhyloWGS; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

RAPSearch2

Software Authors:   Zhao Y, Tang H, Ye Y
Referenced in: 2 Publications (2017–2019)
Related Software: SplitsTree; MrBayes; Tracer; MulRF; iGTP; TOPAL; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

SlimGene

Software Authors:   C. Kozanitis, C.T. Saunders, S. Kruglyak, V. Bafna, G. Varghese
Referenced in: 1 Publication (2018)
Related Software: SCALCE; Kpath; BEETL
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

SNVer

Software Authors:   Zhi Wei, Wei Wang, Pingzhao Hu, Gholson J. Lyon, Hakon Hakonarson
Referenced in: 3 Publications (2013–2018)
Related Software: Samtools; GATK; ExomeWalker; BCFtools; HTQC; Jannovar; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)

TreeClone

Software Authors:   Zhou, Tianjian; Sengupta, Subhajit; Müller, Peter; Ji, Yuan
Referenced in: 3 Publications (2019–2021)
Related Software: PyClone; PhyloWGS; PairClone; BWA; SciClone; THetA; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

UPARSE

Software Authors:   Robert Edgar
Referenced in: 3 Publications (2015–2020)
Related Software: R; PhyloScan; loo; RcppArmadillo; Rcpp; DESeq2; …
Main Fields: Statistics (62-XX)

Bambino

Software Authors:   . M.N. Edmonson, J. Zhang, C. Yan, R.P. Finney, D.M. Meerzaman, K.H. Buetow
Referenced in: 1 Publication (2014)
Related Software: UniProt; WebGestalt; KDDONTO; Protege; GeoSVM; GAMES; …
Main Fields: General and overarching topics; collections (00-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

BM-map

Software Authors:   Ji, Yuan; Xu, Yanxun; Zhang, Qiong; Tsui, Kam-Wah; Yuan, Yuan; Norris, Clift jun.; Liang, Shoudan; Liang, Han
Referenced in: 2 Publications (2011–2015)
Related Software: PyClone; BWA; PurityEst; PurBayes; Samtools; KEGG; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

Consed

Software Authors:   Gordon D, Green P
Referenced in: 1 Publication (2017)
Related Software: SplitsTree; MrBayes; Tracer; MulRF; iGTP; TOPAL; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

CoreSNP

Software Authors:   Guzzi, Pietro Hiram; Agapito, Giuseppe; Cannataro, Mario
Referenced in: 2 Publications (2014–2019)
Related Software: Cloud4SNP; MapReduce
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

CUSHAW

Software Authors:   Liu, Yongchao; Schmidt, Bertil
Referenced in: 2 Publications (2017)
Related Software: BWA; Bowtie 2; PatternHunter; SHRiMP; Soap; ART; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

FASTX

Software Authors:   Hannon laboratory
Referenced in: 2 Publications (2017–2018)
Related Software: VarScan; Trimmomatic; Samtools; GATK; MethylCoder; mrsFAST; …
Main Fields: Biology and other natural sciences (92-XX)

G-MAPSEQ

Software Authors:   Wojciechowski, Pawel; Frohmberg, Wojciech; Kierzynka, Michal; Zurkowski, Piotr; Blazewicz, Jacek
Referenced in: 2 Publications (2016–2020)
Related Software: Algorithm 457; R-CHIE; Bowtie 2; RazerS; Musket; G-DNA; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

GASV

Software Authors:   S. Sindi, S. Onal, L. Peng, H. Wu, B.J. Raphael
Referenced in: 1 Publication (2017)
Related Software: Pindel; Delly; svclassify; MetaSV; LUMPY; Vaquita; …
Main Fields: Biology and other natural sciences (92-XX)

HIVE-hexagon

Software Authors:   Santana-Quintero L, Dingerdissen H, Thierry-Mieg J, et al
Referenced in: 2 Publications (2017)
Related Software: PatternHunter; Soap; BWA; BatMeth; PSAR-Align; CAP-miRSeq; …
Main Fields: General and overarching topics; collections (00-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

miRanalyzer

Software Authors:   Hackenberg, M., Sturm, M., Langenberger, D., Falcon-Perez, J.M., Aransay, A.M.
Referenced in: 1 Publication (2012)
Related Software: SpliceTrap; DWE; CLIPZ; mirTools; miRExpress; TargetSpy; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

NGS QC Toolkit

Software Authors:   Patel RK, Jain M
Referenced in: 2 Publications (2015–2016)
Related Software: Galaxy; BioMart; TopHat; FastQC; KEGG; edgeR; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

PurBayes

Software Authors:   Larson, N. B.; Fridley, B. L.
Referenced in: 2 Publications (2015–2021)
Related Software: BWA; PyClone; PurityEst; TreeClone; SciClone; PhyloWGS; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

Reptile

Software Authors:   Xiao Yang, Karin S. Dorman, Srinivas Aluru
Referenced in: 2 Publications (2011–2017)
Related Software: SHREC; HiTEC; Quake; ALLPATHS; BWA; Fiona; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

Rqc

Software Authors:   Welliton Souza, Benilton Carvalho
Referenced in: 1 Publication (2021)
Related Software: ggplot2; Rsamtools; ShortRead; TopHat; Trimmomatic; FastQC; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

SeqBBS

Software Authors:   H. Li, J. Vallandingham, J. Chen
Referenced in: 2 Publications (2016–2020)
Related Software: rSW-seq; CNV-seq; ReadDepth
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

SEQuel

Software Authors:   Roy Ronen, Christina Boucher, Hamidreza Chitsaz, Pavel Pevzner
Referenced in: 2 Publications (2016–2017)
Related Software: SPAdes; Canu; Maligner; PBSIM; OMBlast; ABySS; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

ShoRAH

Software Authors:   Osvaldo Zagordi, Arnab Bhattacharya, Nicholas Eriksson, Niko Beerenwinkel
Referenced in: 1 Publication (2022)
Related Software: Gurobi; MultiTrans; Scallop2; SSP; StringTie; RefShannon; …
Main Fields: Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

WaveSeq

Software Authors:   Mitra, A.; Song, J
Referenced in: 2 Publications (2015–2021)
Related Software: pffr; fda (R); ChIP-PaM; qvalue
Main Fields: Harmonic analysis on Euclidean spaces (42-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

ANGSD

Software Authors:   Korneliussen, T. S., Albrechtsen, A., Nielsen, R.
Referenced in: 1 Publication (2018)
Related Software: Frappe; AmiGO; LEA; fastSTRUCTURE; tess3r; STRUCTURE; …
Main Fields: Statistics (62-XX)

BatMeth

Software Authors:   Lim, J.Q., et al.
Referenced in: 1 Publication (2017)
Related Software: BWA; PSAR-Align; CAP-miRSeq; Pash; MAP-RSeq; Socrates; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

BayClone2

Software Authors:   Ji, Yuan; Sengupta, Subhajit; Lee, Juhee; Müller, Peter; Gulukota, Kamalakar
Referenced in: 1 Publication (2015)
Related Software: SciClone; PyClone; THetA; GATK; R
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

BigWig

Software Authors:   Kent, W. J., Zweig, A. S., Barber, G., Hinrichs, A. S., Karolchik, D.
Referenced in: 1 Publication (2014)
Related Software: GenomicAlignments; GenomicRanges; BatchExperiments; BatchJobs; biovizBase; pbdR; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

BING

Software Authors:   Kriseman J, Busick C, Szelinger S, Dinu V
Referenced in: 1 Publication (2012)
Related Software: SpliceTrap; DWE; CLIPZ; mirTools; miRExpress; TargetSpy; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

Bioinformatics Toolbox

Software Authors:   mathworks
Referenced in: 0 Publications
Related Software: panp; RcppGSL; Ox; Affymetrix; Matlab; Bioconductor; …
Main Fields:

BLESS

Software Authors:   Heo, Y.; Wu, X. L.; Chen, D.; Ma, J.; Hwu, W. M.
Referenced in: 1 Publication (2019)
Related Software: GemSIM; BioBloom Tools; sourmash; Mash; HyperLogLog
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

CAR

Software Authors:   Lu, C. L.; Chen, K.-T.; Huang, S.-Y.; Chiu, H.-T.
Referenced in: 1 Publication (2016)
Related Software:
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

CIPHER

Software Authors:   Guzman C, D'Orso I
Referenced in: 0 Publications
Related Software: TRAPLINE; bcbio-nextgen; Snakemake; Taverna; Galaxy; STAR; …
Main Fields:

CIRCUS

Software Authors:   Naquin D, d’Aubenton-Carafa Y, Thermes C, Silvain M
Referenced in: 1 Publication (2017)
Related Software: QAPgrid; IgTree; Decombinator; SoDA2; Ab-origin; iHMMune-align; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

DARNED

Software Authors:   Kiran A, Baranov PV
Referenced in: 1 Publication (2015)
Related Software: TagCleaner; OligoWalk; OptiRNAi; ASTALAVISTA; PredGPI; SPEPlip; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

DBG2OLC

Software Authors:   Ye, C., Hill, C.M., Wu, S., Ruan, J., Ma, Z.S.
Referenced in: 1 Publication (2019)
Related Software: Pilon; ALLMAPS; Bambus 2; OMGS; GitHub; ABySS; …
Main Fields: Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

deepTools2

Software Authors:   Ramírez, F., et al
Referenced in: 1 Publication (2019)
Related Software: ChromHMM; ModHMM; GitHub; BayesPeak
Main Fields: Biology and other natural sciences (92-XX)

EDGAR

Software Authors:   uni-giessen.de
Referenced in: 1 Publication (2013)
Related Software: PGAT; PanCake
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

EPA-ng

Software Authors:   Pierre Barbera, Alexey M Kozlov, Lucas Czech, Benoit Morel, Diego Darriba, Tomáš Flouri, Alexandros Stamatakis
Referenced in: 1 Publication (2022)
Related Software: APPLES; DEPP; PhyloGeoTool; INSTRAL; UShER; HmmUFOtu; …
Main Fields: Biology and other natural sciences (92-XX)

ExaML

Software Authors:   Kozlov, A.M., Aberer, A.J., Stamatakis, A.
Referenced in: 1 Publication (2019)
Related Software: S-Cluster++; SplitsTree; MrBayes; MCScanX; CYNTENATOR; i-ADHoRe; …
Main Fields: General and overarching topics; collections (00-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

ExSPAnder

Software Authors:   Prjibelski, A.D., Vasilinetc, I., Bankevich, A., Gurevich, A., Krivosheeva, T., Nurk, S., Pham, S., Korobeynikov, A., Lapidus, A., Pevzner, P.A
Referenced in: 1 Publication (2015)
Related Software: SPAdes; GAGE
Main Fields: Combinatorics (05-XX)

FASTAptamer

Software Authors:   Alam, K.; Chang, J.; Burke, D.
Referenced in: 1 Publication (2016)
Related Software:
Main Fields: Order, lattices, ordered algebraic structures (06-XX); Computer science (68-XX)

GAMES

Software Authors:   M.E. Sana, M. Iascone, D. Marchetti, J. Palatini, M. Galasso, S. Volinia
Referenced in: 1 Publication (2014)
Related Software: UniProt; WebGestalt; KDDONTO; Protege; GeoSVM; Bambino; …
Main Fields: General and overarching topics; collections (00-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

GemSIM

Software Authors:   McElroy, K. E.; Luciani, F.; Thomas, T.
Referenced in: 1 Publication (2019)
Related Software: BLESS; BioBloom Tools; sourmash; Mash; HyperLogLog
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

GENE-counter

Software Authors:   Cumbie, J. S., J. A. Kimbrel, Y. Di, D. W. Schafer, L. J. Wilhelm, S. E. Fox, C. M. Sullivan, A. D. Curzon, J. C. Carrington, T. C. Mockler, J. H. Chang
Referenced in: 1 Publication (2016)
Related Software: Scotty; PROPER; DEseq; DEGseq; SAS; Bioconductor
Main Fields: Biology and other natural sciences (92-XX)

geno2pheno

Software Authors:   Döring, M., et al.
Referenced in: 1 Publication (2019)
Related Software: Kinship-Privacy; HElib
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

GlfMultiples

Software Authors:   Abecasis Lab
Referenced in: 1 Publication (2017)
Related Software: Sniper; RNASeqReadSimulator; abSNP; SNVMix; VarScan; RSEM; …
Main Fields: Biology and other natural sciences (92-XX)

GTED

Software Authors:   Ali Ebrahimpour Boroojeny, Akash Shrestha, Ali Sharifi-Zarchi, Suzanne Renick Gallagher, S Cenk Sahinalp, Hamidreza Chitsaz
Referenced in: 1 Publication (2019)
Related Software: CAMSA; hybridSPAdes; HINGE; Canu; Bandage; Unicycler; …
Main Fields: Biology and other natural sciences (92-XX)

Hadoop-BAM

Software Authors:   Matti Niemenmaa; Aleksi Kallio; André Schumacher; Petri Klemelä; Eija Korpelainen; Keijo Heljanko
Referenced in: 1 Publication (2013)
Related Software: Crossbow; Probalign; k-means++; Jnomics; T-coffee; Kalign; …
Main Fields: Biology and other natural sciences (92-XX)

HaploMerger

Software Authors:   Huang S, et al.
Referenced in: 0 Publications
Related Software: GAGE; Velvet; dipSPAdes; Hapsembler; Meraculous-2D
Main Fields:

HmmSeq

Software Authors:   Cui, Shiqi; Guha, Subharup; Ferreira, Marco A.R.; Tegge, Allison N.
Referenced in: 1 Publication (2015)
Related Software: DAVID; BaySeq; CNAmet; tmvtnorm; edgeR; Bioconductor; …
Main Fields: Statistics (62-XX)

HPMV

Software Authors:   –
Referenced in: 1 Publication (2016)
Related Software: PlantTFDB; eggNOG; ELM; dbCAN; antiSMASH; dissectHMMER; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

IgRepertoireConstructor

Software Authors:   Safonova Y, Bonissone S, Kurpilyansky E et al
Referenced in: 1 Publication (2017)
Related Software: QAPgrid; IgTree; Decombinator; SoDA2; Ab-origin; iHMMune-align; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

IGV-plus

Software Authors:   Agliata, Antonio; De Martino, Marco; Ferraro, Maria Brigida; Guarracino, Mario Rosario
Referenced in: 0 Publications
Related Software:
Main Fields:

KAT

Software Authors:   Mapleson D, Garcia Accinelli G, Kettleborough G, Wright J, Clavijo BJ
Referenced in: 1 Publication (2020)
Related Software: TTA Lynx; CodonTest; ALF; xREI; RevTrans; MACSE; …
Main Fields: Biology and other natural sciences (92-XX)

LRBinner

Software Authors:   Wickramarachchi, A., Lin, Y.
Referenced in: 1 Publication (2022)
Related Software: metaFlye; MetaQUAST; AMBER; Centrifuge; Seq2Vec; MetaBCC-LR; …
Main Fields: Biology and other natural sciences (92-XX)

MetaCluster

Software Authors:   Wang, Y.; Leung, H. C.; Yiu, S. M.; Chin, F. Y.
Referenced in: 1 Publication (2017)
Related Software: ONE; MetaSim; CLARK; SpEED; MetaProb; PatternHunter; …
Main Fields: Biology and other natural sciences (92-XX)

MetAMOS

Software Authors:   Treangen, T., Koren, S., Sommer, D., Liu, B., Astrovskaya, I., Ondov, B., Darling, A., Phillippy, A., Pop, M.
Referenced in: 1 Publication (2017)
Related Software: Fiona; Oases; SPAdes; BLAT; Quake
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

MetaSpark

Software Authors:   Zhou, W.; Li, R.; Yuan, S.; Liu, C.; Yao, S.; Luo, J.; Niu, B
Referenced in: 1 Publication (2017)
Related Software: AlexNet; Apache Spark; Spark; ImageNet; MapReduce
Main Fields: Computer science (68-XX); Systems theory; control (93-XX); Information and communication theory, circuits (94-XX)

MetaSV

Software Authors:   Marghoob Mohiyuddin, John C. Mu, Jian Li, Narges Bani Asadi, Mark B. Gerstein, Alexej Abyzov, Wing H. Wong, Hugo Y K Lam
Referenced in: 1 Publication (2017)
Related Software: GASV; Pindel; Delly; svclassify; LUMPY; Vaquita; …
Main Fields: Biology and other natural sciences (92-XX)

MicrobiomeAnalyst

Software Authors:   Dhariwal, A., J. Chong, et al.
Referenced in: 1 Publication (2018)
Related Software: NeatMap; betapart; INMEX; HMP; MetamicrobiomeR; MDSINE; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

miRNAkey

Software Authors:   Ronen, R., Gan, I., Modai, S., Sukacheov, A., Dror, G., Halperin, E., Shomron, N.
Referenced in: 1 Publication (2012)
Related Software: SpliceTrap; DWE; CLIPZ; mirTools; miRExpress; TargetSpy; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

motifDiverge

Software Authors:   Kostka, Dennis; Friedrich, Tara; Holloway, Alisha K.; Pollard, Katherine S.
Referenced in: 1 Publication (2015)
Related Software: R
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

MultiQC

Software Authors:   Philip Ewels, Måns Magnusson, Sverker Lundin, Max Käller
Referenced in: 1 Publication (2018)
Related Software: HaploReg; MapSplice; eSNV-detect; Strelka; Salmon; ZOOM; …
Main Fields: Biology and other natural sciences (92-XX)

Musket

Software Authors:   Liu, Y., Schröder, J., Schmidt, B.
Referenced in: 1 Publication (2016)
Related Software: Bowtie 2; RazerS; G-DNA; G-MSA; G-MAPSEQ
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

NBC

Software Authors:   Rosen, G.L., Reichenberger, E.R., Rosenfeld, A.M.
Referenced in: 1 Publication (2015)
Related Software: RePS; JBROWSE; ABySS; Artemis; Meta-IDBA; CEGMA; …
Main Fields: Probability theory and stochastic processes (60-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

NGS

Software Authors:   Yau, Stephen S.-T.; Yin, Changchuan
Referenced in: 1 Publication (2019)
Related Software: GitHub
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

NGS-Trex

Software Authors:   Ilenia Boria, Lara Boatti, Igor Saggese, Flavio Mignone
Referenced in: 1 Publication (2015)
Related Software: TagCleaner; OligoWalk; OptiRNAi; ASTALAVISTA; PredGPI; SPEPlip; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

nucleoSim

Software Authors:   Rawane Samb, Astrid Deschênes, Pascal Belleau, Arnaud Droit
Referenced in: 1 Publication (2015)
Related Software: PICS; PuFFIN; nucleR; consensusSeekeR; VennDiagram
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

OmegaPlus

Software Authors:   Alachiotis, N., A. Stamatakis, P. Pavlidis
Referenced in: 1 Publication (2018)
Related Software:
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)