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Found 822 Software Packages (Results 1–100)

LAPACK

Software Authors:   LAPACK team: lapack@cs.utk.edu
Referenced in: 1,647 Publications (1988–2022)
Related Software: BLAS; ScaLAPACK; Matlab; mctoolbox; LINPACK; ARPACK; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Numerical analysis (65-XX); Computer science (68-XX)

SPIN

Software Authors:   Bell Labs
Referenced in: 590 Publications (1990–2022)
Related Software: NuSMV; Uppaal; Bandera; Java PathFinder; Bebop; CESAR; …
Main Fields: Mathematical logic and foundations (03-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

Geometer's Sketchpad

Software Authors:   2009 KCP Technologies.
Referenced in: 63 Publications (1997–2021)
Related Software: Cinderella; GeoGebra; Mathematica; Cabri-geometry; GEX; CoCoA; …
Main Fields: General and overarching topics; collections (00-XX); Geometry (51-XX); Numerical analysis (65-XX)

PhaseLift

Software Authors:   Candès, Emmanuel J.; Eldar, Yonina C.; Strohmer, Thomas; Voroninski, Vladislav
Referenced in: 228 Publications (2012–2022)
Related Software: Wirtinger Flow; GESPAR; PhaseMax; TFOCS; CVX; SparsePR; …
Main Fields: Harmonic analysis on Euclidean spaces (42-XX); Statistics (62-XX); Numerical analysis (65-XX)

NEURON

Software Authors:   Migliore, M.; Cannia, C.; Lytton, W.W.; Markram, Henry; Hines, M.L.
Referenced in: 135 Publications (1996–2021)
Related Software: NEST; Brian; Pynn; Spikenet; SpiNNaker; XPPAUT; …
Main Fields: Ordinary differential equations (34-XX); Partial differential equations (35-XX); Numerical analysis (65-XX)

PolyMesher

Software Authors:   Talischi, Cameron; Paulino, Glaucio H.; Pereira Anderson; Menezes, Ivan F.M.
Referenced in: 162 Publications (2012–2022)
Related Software: PolyTop; Matlab; Triangle; DistMesh; iFEM; Gmsh; …
Main Fields: Partial differential equations (35-XX); Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX)

SnapPea

Software Authors:   Callahan, Patrick J.; Hildebrand, Martin V.; Weeks, Jeffrey R.
Referenced in: 163 Publications (1992–2022)
Related Software: Snap; SnapPy; Regina; Magma; GAP; Knotscape; …
Main Fields: Group theory and generalizations (20-XX); Functions of a complex variable (30-XX); Differential geometry (53-XX)

spatstat

Software Authors:   Adrian Baddeley, Rolf Turner, Ege Rubak; et al
Referenced in: 114 Publications (2005–2022)
Related Software: R; spatial; pyuvdata; Splancs; lgcp; RandomFields; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

Wirtinger Flow

Software Authors:   Emmanuel Candes, Xiaodong Li, Mahdi Soltanolkotabi
Referenced in: 120 Publications (2015–2022)
Related Software: PhaseLift; PhaseMax; GESPAR; SparsePR; CVX; PhaseCut; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Statistics (62-XX); Numerical analysis (65-XX)

LOF

Software Authors:   Breunig, M., Kriegel, H., Ng, R., Sander, J.
Referenced in: 76 Publications (2008–2022)
Related Software: UCI-ml; Orca; IsolationForest; ELKI; R; ROCK; …
Main Fields: Combinatorics (05-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

DistAl

Software Authors:   Yang, Jihoon; Parekh, Rajesh; Honavar, Vasant
Referenced in: 76 Publications (1999–2022)
Related Software: UCI-ml; C4.5; Genocop; SPEA2; R; LIBSVM; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

Latent GOLD

Software Authors:   Vermunt, J.K.; Magidson, J; Statistical Innovations Inc.,
Referenced in: 83 Publications (2002–2022)
Related Software: Mplus; R; mclust; BayesDA; flexmix; poLCA; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

SPADE

Software Authors:   Zaki, Mohammed J.
Referenced in: 57 Publications (2001–2022)
Related Software: PrefixSpan; BIDE; CloSpan; gSpan; CLOSET; SPMF; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

PrefixSpan

Software Authors:   Pei J, Han J, Mortazavi Asl B, Pinto H, Chen Q, Dayal U, Hsu M C
Referenced in: 37 Publications (2004–2022)
Related Software: SPADE; CloSpan; BIDE; gSpan; SPMF; CLOSET; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Geophysics (86-XX)

Sat4j

Software Authors:   Le Berre; Parrain
Referenced in: 81 Publications (2007–2022)
Related Software: MiniSat; Chaff; QMaxSAT; Open-WBO; PicoSAT; z3; …
Main Fields: Mathematical logic and foundations (03-XX); Combinatorics (05-XX); Computer science (68-XX)

node2vec

Software Authors:   Aditya Grover, Jure Leskovec
Referenced in: 79 Publications (2017–2022)
Related Software: DeepWalk; word2vec; GraRep; t-SNE; struc2vec; Adam; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

Stratego

Software Authors:   Visser, Eelco
Referenced in: 74 Publications (2001–2022)
Related Software: Maude; ELAN; Tom; Haskell; ATERM; ASF+SDF; …
Main Fields: Mathematical logic and foundations (03-XX); Combinatorics (05-XX); Computer science (68-XX)

ROCK

Software Authors:   Guha, S.; Rastogi, R.; Shim, K.
Referenced in: 40 Publications (2002–2021)
Related Software: clusfind; UCI-ml; COOLCAT; LOF; ElemStatLearn; COSA; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

BABEL

Software Authors:   Mario Rodriguez-Artalejo
Referenced in: 69 Publications (1988–2013)
Related Software: Kernel-LEAF; TOY; Curry; ECCE; PAKCS; Miranda; …
Main Fields: General and overarching topics; collections (00-XX); Mathematical logic and foundations (03-XX); Computer science (68-XX)

Gephi

Software Authors:   M. Bastian, S. Heymann, M. Jacomy
Referenced in: 56 Publications (2012–2022)
Related Software: NetworkX; ForceAtlas2; igraph; Cytoscape; Pajek; R; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

YAWL

Software Authors:   van der Aalst, Wil M.P.
Referenced in: 26 Publications (2004–2021)
Related Software: Woflan; Taverna; WSAT; PNML; Oracle; BPEL2PN; …
Main Fields: Mathematical logic and foundations (03-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

Freshml

Software Authors:   Shinwell, M.R., Pitts, A.M., Gabbay, M.
Referenced in: 48 Publications (2003–2021)
Related Software: Coq; Nominal Isabelle; Twelf; Isabelle/HOL; OCaml; Agda; …
Main Fields: Mathematical logic and foundations (03-XX); Order, lattices, ordered algebraic structures (06-XX); General algebraic systems (08-XX)

INLA

Software Authors:   Illian, Janine B.; Sørbye, Sigrunn H.; Rue, Håvard
Referenced in: 38 Publications (2009–2022)
Related Software: R; R-INLA; spBayes; GMRFLib; WinBUGS; spatstat; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

SAMRAI

Software Authors:   Hornung, Richard D.; Kohn, Scott R.
Referenced in: 44 Publications (2002–2022)
Related Software: PETSc; hypre; PARAMESH; Chombo; BoxLib; AMROC; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

CDuce

Software Authors:   Benzaken, Véronique; Castagna, Giuseppe; Frisch, Alain
Referenced in: 48 Publications (2003–2020)
Related Software: XDuce; XPath; XQuery; Haskell; OCaml; PiDuce; …
Main Fields: Mathematical logic and foundations (03-XX); Computer science (68-XX)

CloSpan

Software Authors:   X. Yan, J. Han, R. Afshar
Referenced in: 15 Publications (2005–2019)
Related Software: PrefixSpan; BIDE; SPADE; CLOSET; gSpan; CloseGraph; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

EasyLocal++

Software Authors:   Di Gaspero, L., Schaerf, A
Referenced in: 32 Publications (2001–2022)
Related Software: Localizer; COMET; Tabu search; CPLEX; DIMACS; ParaDisEO; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

PROSITE

Software Authors:   Sigrist, C.J.A., Cerutti, L., Hulo, N., Gattiker, A., Falquet, L., Pagni, M., Bairoch, A., Bucher, P.
Referenced in: 19 Publications (2004–2022)
Related Software: Pfam; BLAST; PSI-BLAST; ClustalW; UniProt; KEGG; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

spdep

Software Authors:   Roger Bivand, et al
Referenced in: 24 Publications (2004–2021)
Related Software: R; Matrix; GeoDa; CRAN; rgdal; splm; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Geophysics (86-XX)

TinkerPlots

Software Authors:   Key Curriculum Press
Referenced in: 0 Publications
Related Software: Fathom; R; NetLogo; bootstrap; WINSTEPS; ElemStatLearn; …
Main Fields:

XGobi

Software Authors:   Swayne DF, Cook D, Buja A
Referenced in: 27 Publications (1995–2020)
Related Software: R; GGobi; MANET; ggplot2; Mondrian; iplots; …
Main Fields: Convex and discrete geometry (52-XX); Statistics (62-XX); Numerical analysis (65-XX)

BIDE

Software Authors:   Wang J, Han J
Referenced in: 16 Publications (2006–2019)
Related Software: PrefixSpan; SPADE; CloSpan; gSpan; PR-Miner; XPath; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

CLAIRE

Software Authors:   Caseau, Yves; Josset, François-Xavier; Laburthe, François
Referenced in: 32 Publications (1998–2019)
Related Software: Oz; Choco; SALSA; CHIP; BL data set; ELAN; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

MEGA

Software Authors:   Kumar, S.; Nei, M.; Dudley, J.; Tamura, K.
Referenced in: 27 Publications (2001–2021)
Related Software: MEGA4; PHYLIP; BLAST; ClustalW; BEAST; MrBayes; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Numerical analysis (65-XX)

EasyCrypt

Software Authors:   Barthe, Gilles; Grégoire, Benjamin; Heraud, Sylvain; Béguelin, Santiago Zanella
Referenced in: 32 Publications (2011–2021)
Related Software: Coq; F*; CryptHOL; Isabelle/HOL; AVISPA; z3; …
Main Fields: Mathematical logic and foundations (03-XX); Category theory; homological algebra (18-XX); Computer science (68-XX)

GraphLog

Software Authors:   Consens, M.; Mendelzon
Referenced in: 32 Publications (1990–2022)
Related Software: XPath; SPARQL; Lorel; Datalog; nSPARQL; DLV2; …
Main Fields: Mathematical logic and foundations (03-XX); Combinatorics (05-XX); Associative rings and algebras (16-XX)

VIATRA2

Software Authors:   Varró, Dániel; Balogh, András
Referenced in: 18 Publications (2006–2019)
Related Software: PROGRES; AGG; Graph transformation benchmarks; VPM; AToM3; GROOVE; …
Main Fields: Computer science (68-XX)

jStar

Software Authors:   DiStefano, D., Parkinson, M.
Referenced in: 29 Publications (2008–2017)
Related Software: Smallfoot; VeriFast; Coq; Boogie; Spec#; ESC/Java; …
Main Fields: Mathematical logic and foundations (03-XX); Computer science (68-XX)

CloseGraph

Software Authors:   X. Yan; J. Han
Referenced in: 19 Publications (2005–2020)
Related Software: gSpan; CLOSET; CMAR; nauty; CloSpan; PrefixSpan; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

EBarrays

Software Authors:   Michael A. Newton, Christina Kendziorski
Referenced in: 31 Publications (2003–2013)
Related Software: R; Bioconductor; SAM; sma; gaga; gcrma; …
Main Fields: General and overarching topics; collections (00-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

BETA

Software Authors:   Bent Bruun Kristensen, Ole Lehrmann Madsen, Birger Møller-Pedersen, Kristen Nygaard
Referenced in: 21 Publications (1985–2016)
Related Software: Eiffel; Simula 67; Smalltalk; BetaSim; PolyTOIL; Featherweight Java; …
Main Fields: Mathematical logic and foundations (03-XX); Computer science (68-XX); Mechanics of deformable solids (74-XX)

BioProspector

Software Authors:   Liu, X., Brutlag, D., Liu, J.
Referenced in: 21 Publications (2002–2013)
Related Software: TRANSFAC; JASPAR; WebLogo; CisModule; PhyME; TEIRESIAS; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

REVEAL

Software Authors:   Liang, S., Fuhrman, S., Somogyi, R
Referenced in: 22 Publications (2003–2022)
Related Software: KEGG; R; BoolNet; E-CELL; GEPASI; Macaulay2; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

ART 3

Software Authors:   Gail A. Carpenter; Stephen Grossberg
Referenced in: 16 Publications (1992–2012)
Related Software: Fuzzy ARTMAP; UCI-ml; LVQPAK; Matplotlib; SciPy; Matlab; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

GVF

Software Authors:   Marshall, M.S.; Herman, I.; Melançon, G.
Referenced in: 20 Publications (2001–2022)
Related Software: IsoMatch; AMPL; Prefuse; TopoLayout; PRMLT; FAIS; …
Main Fields: Combinatorics (05-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

LSRN

Software Authors:   Meng, Xiangrui; Saunders, Michael A.; Mahoney, Michael W.
Referenced in: 27 Publications (2011–2022)
Related Software: Blendenpik; LSQR; Regularization tools; LSMR; PDCO; SparseMatrix; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Statistics (62-XX); Numerical analysis (65-XX)

GraphScope

Software Authors:   Sun J, Papadimitriou S, Yu P.S, Faloutsos C
Referenced in: 23 Publications (2011–2021)
Related Software: FacetNet; GenLouvain; HPStream; LCM; Algorithm 457; gSpan; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

BoxLib

Software Authors:   CCSE
Referenced in: 19 Publications (1998–2022)
Related Software: Chombo; PARAMESH; CASTRO; SAMRAI; Carpet; MAESTRO; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

CompuCell3D

Software Authors:   Popławski, Nikodem J.; Shirinifard, Abbas; Swat, Maciej; Glazier, James A.
Referenced in: 24 Publications (2008–2022)
Related Software: PhysiCell; Chaste; EmbryoMaker; ParaView; CellSys; Microvessel Chaste; …
Main Fields: Partial differential equations (35-XX); Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX)

GraphLab

Software Authors:   Yucheng Low, Joseph E. Gonzalez, Aapo Kyrola, Danny Bickson, Carlos E. Guestrin, Joseph Hellerstein
Referenced in: 20 Publications (2010–2022)
Related Software: Pregel; MapReduce; GraphX; Giraph; PowerGraph; Blogel; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Numerical analysis (65-XX)

Signal Processing Toolbox

Software Authors:   mathworks
Referenced in: 25 Publications (1995–2022)
Related Software: Matlab; System Identification Toolbox; Control System Toolbox; Simulink; FastGaussQuadrature; AAA; …
Main Fields: Computer science (68-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

WebLogo

Software Authors:   G.E. Crooks, G. Hon, J.-M. Chandonia, S.E. Brenner
Referenced in: 13 Publications (2004–2021)
Related Software: TRANSFAC; BioProspector; R; RegulonDB; LIBSVM; JASPAR; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

PARAFAC

Software Authors:   Harshman, R.A.; Lundy, M.E.
Referenced in: 23 Publications (1994–2022)
Related Software: N-way Toolbox; Silhouettes; Blitz++; TAMRESH; POOMA; Boost MultiArray; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

waLBerla

Software Authors:   Donath, S.; Götz, J.; Feichtinger, C.; Igiberger, K.; Rüde, U.
Referenced in: 21 Publications (2010–2022)
Related Software: Palabos; OpenLB; Peano; LB3D; p4est; Gerris; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Fluid mechanics (76-XX)

FSDA

Software Authors:   Riani M, Perrotta D, Torti F
Referenced in: 21 Publications (2013–2022)
Related Software: robustbase; TCLUST; R; mvBACON; rrcov; mclust; …
Main Fields: Statistics (62-XX)

GET

Software Authors:   Mari Myllymäki, Tomáš Mrkvička, Pavel Grabarnik, Ute Hahn, Mikko Kuronen, Michael Rost, Henri Seijo
Referenced in: 23 Publications (2016–2022)
Related Software: R; bootlib; fda (R); spatial; fda.usc; spatstat; …
Main Fields: Algebraic topology (55-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

Haploview

Software Authors:   J. C. Barrett; B. Fry; J. Maller; M. J. Daly
Referenced in: 19 Publications (2007–2022)
Related Software: PLINK; R; LocusZoom; qqman; CRAN; LdCompare; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Operations research, mathematical programming (90-XX)

prefmod

Software Authors:   Reinhold Hatzinger
Referenced in: 15 Publications (2010–2021)
Related Software: R; BradleyTerry2; gnm; Pmr; PerMallows; gvcm.cat; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Numerical analysis (65-XX)

BinaryTrees

Software Authors:   Rowland, Eric S.
Referenced in: 22 Publications (2010–2021)
Related Software: OEIS; GJsqfree; GJSAW; GJseries; SPGJ; SYMGJ; …
Main Fields: Combinatorics (05-XX); Number theory (11-XX); Category theory; homological algebra (18-XX)

TAXYS

Software Authors:   Closse, Etienne; Poize, Michel; Pulou, Jacques; Sifakis, Joseph; Venter, Patrick
Referenced in: 15 Publications (2001–2017)
Related Software: Uppaal; Kronos; Eiffel; Uppaal2k; Esterel; Modelica; …
Main Fields: Computer science (68-XX); Operations research, mathematical programming (90-XX); Systems theory; control (93-XX)

Krimp

Software Authors:   Vreeken J, Van Leeuwen M, Siebes A
Referenced in: 19 Publications (2011–2022)
Related Software: UCI-ml; MDL4BMF; StreamKrimp; gSpan; PrefixSpan; C4.5; …
Main Fields: Combinatorics (05-XX); Linear and multilinear algebra; matrix theory (15-XX); Statistics (62-XX)

VISSIM

Software Authors:   PTV Planung Transport Verkehr AG
Referenced in: 18 Publications (2005–2022)
Related Software: Matlab; Sobol; bootstrap; SSAM; FactoClass; dendextend; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

arules

Software Authors:   Michael Hahsler, Christian Buchta, Bettina Grün, Kurt Hornik
Referenced in: 15 Publications (2008–2021)
Related Software: R; UCI-ml; caret; rpart; arulesViz; tm; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Computer science (68-XX)

FRAGSTATS

Software Authors:   McGarigal, K.; Cushman, S. A.; Ene, E.
Referenced in: 12 Publications (2000–2021)
Related Software: R; CPLEX; raster; OpenStreetMap; Groovy; RPostgreSQL; …
Main Fields: Statistics (62-XX); Geophysics (86-XX); Operations research, mathematical programming (90-XX)

gensim

Software Authors:   Radim Řehůřek
Referenced in: 17 Publications (2011–2021)
Related Software: GloVe; MALLET; word2vec; Python; mcmcse; HOLyHammer; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Computer science (68-XX)

BaySeq

Software Authors:   Thomas J Hardcastle; Krystyna A Kelly
Referenced in: 16 Publications (2013–2018)
Related Software: Bioconductor; edgeR; DEseq; R; Voom; DESeq2; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)

CellProfiler

Software Authors:   Anne E Carpenter, Thouis R Jones, Michael R Lamprecht, Colin Clarke, In Han Kang, Ola Friman, David A Guertin, Joo Han Chang, Robert A Lindquist, Jason Moffat, Polina Golland, David M Sabatini
Referenced in: 5 Publications (2018–2020)
Related Software: ImageJ; ImageJ2; Fiji; ImgLib2; scikit-image; ilastik; …
Main Fields: Algebraic topology (55-XX); Statistics (62-XX); Computer science (68-XX)

GATK

Software Authors:   A. McKenna, M. Hanna, E. Banks et al.
Referenced in: 16 Publications (2012–2021)
Related Software: Samtools; Trimmomatic; R; BWA; Bowtie 2; FastQC; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

HPCC

Software Authors:   Saini, Subhash; Ciotti, Robert; Gunney, Brian T.N.; Spelce, Thomas E.; Koniges, Alice; Dossa, Don; Adamidis, Panagiotis; Rabenseifner, Rolf; Tiyyagura, Sunil R.; Mueller, Matthias
Referenced in: 9 Publications (1999–2021)
Related Software: LINPACK; NAS Parallel Benchmarks; STREAM; Matrix Depot; zeroin; HPL; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX)

Autograph

Software Authors:   Kim, H.A., Karp, B.
Referenced in: 4 Publications (2010–2018)
Related Software: Polygraph; Snort; Hamsa; BLINC; Panorama; KEA; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX); Information and communication theory, circuits (94-XX)

DynaMIT

Software Authors:   Ben-Akiva, Moshe; Bierlaire, Michel; Koutsopoulos, Haris N.; Mishalani, Rabi
Referenced in: 16 Publications (2000–2019)
Related Software: go; GAMS; MATSim; CONTRAM
Main Fields: Ordinary differential equations (34-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

JCLEC

Software Authors:   Sebastián Ventura, Cristóbal Romero, Amelia Zafra, José A. Delgado, César Hervás
Referenced in: 2 Publications (2009–2015)
Related Software: KEEL; UCI-ml; ECJ; ParaDisEO; C4.5; SPEA2; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

TEIRESIAS

Software Authors:   Rigoutsos I., Floratos A.
Referenced in: 9 Publications (2004–2019)
Related Software: Pfam; BioProspector; MEME; TRANSFAC; ELM; Cd-hit; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Computer science (68-XX)

HERB

Software Authors:   Zeilberger, Doron
Referenced in: 15 Publications (1998–2019)
Related Software: WILF; OEIS; InsEnc; PermPAL; PermStruct; Lingeling; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX)

Monomvn

Software Authors:   Robert B. Gramacy
Referenced in: 14 Publications (2010–2022)
Related Software: R; glmnet; ElemStatLearn; CRAN; BayesDA; lars; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Statistics (62-XX); Numerical analysis (65-XX)

OrthoMCL

Software Authors:   Li, L., Stoeckert, C.J., Roos, D.
Referenced in: 8 Publications (2006–2020)
Related Software: MSOAR; BLAST; PSI-BLAST; eggNOG; Proteinortho; PHYLIP; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Statistics (62-XX)

Seesoft

Software Authors:   Eick, S.; Jr., J. Steffen
Referenced in: 8 Publications (1995–2011)
Related Software: Codecrawler; Hipikat; Jove; CVSscan; Vizz3D; ThemeRiver; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

SpectrUW

Software Authors:   Deconinck, Bernard; Kiyak, Firat; Carter, John D.; Kutz, J.Nathan
Referenced in: 15 Publications (2007–2020)
Related Software: STABLAB; AUTO; GitHub; HomCont; wavetrain; LAPACK; …
Main Fields: Partial differential equations (35-XX); Dynamical systems and ergodic theory (37-XX); Operator theory (47-XX)

SPMF

Software Authors:   Fournier-Viger, Philippe; Gomariz, Antonio; Gueniche, Ted; Soltani, Azadeh; Wu, Cheng-Wei; Tseng, Vincent S.
Referenced in: 14 Publications (2013–2022)
Related Software: PrefixSpan; SPADE; Scikit; LCM; Minebench; Python; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

YADE

Software Authors:   Kozicki, J.; Donzé, F.V.
Referenced in: 13 Publications (2008–2022)
Related Software: LIGGGHTS; OpenFOAM; Matlab; QGLViewer; DEMPack; Bullet; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Mechanics of deformable solids (74-XX)

ANF

Software Authors:   C.R. Palmer, P.B. Gibbons, C. Faloutsos
Referenced in: 12 Publications (2005–2017)
Related Software: HyperLogLog; gSpan; WebGraph; KronFit; SNAP; CloseGraph; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

CHOMPACK

Software Authors:   J. Dahl, L. Vandenberghe, V. Roychowdhury
Referenced in: 14 Publications (2008–2022)
Related Software: glasso; CVXOPT; SDPLIB; SparseMatrix; SDPT3; SeDuMi; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Calculus of variations and optimal control; optimization (49-XX); Statistics (62-XX)

TileMap

Software Authors:   Ji, H. and Wong, W. A.
Referenced in: 10 Publications (2006–2012)
Related Software: R; sma; vsn; FindPeaks; ChIPOTle; NTAP; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

DGL

Software Authors:   Minjie Wang, Da Zheng, Guan Gan, Mufei Li, Zihao Ye, Chao Ma, Jinjing Zhou, Xiang Song, Tianjun Xiao, Tong He, Jian Zhang, Wen-ming Ye, George Karypis, Zheng Zhang
Referenced in: 3 Publications (2021–2022)
Related Software: PyTorch; Python; MoleculeNet; Keras; TensorFlow; RotatE; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Information and communication theory, circuits (94-XX)

iOri-Human

Software Authors:   Zhang, C.J.; Tang, H.; Li, W.C.
Referenced in: 13 Publications (2017–2022)
Related Software: iRNA-AI; pSuc-Lys; pLoc-mEuk; pLoc-mPlant; iPromoter-2L; iRSpot-EL; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

MEME

Software Authors:   Bailey, T.L., Williams, N., Misleh, C., Li, W.W.
Referenced in: 9 Publications (2011–2018)
Related Software: BLAT; R; DIALIGN; ANNOVAR; KEGG; WEKA; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)

PQL

Software Authors:   Martin, M., Livshits, V.B., Lam, M.S.
Referenced in: 7 Publications (2003–2020)
Related Software: JML; SLAM; MOPS; Eiffel; AMNESIA; J-LO; …
Main Fields: Mathematical logic and foundations (03-XX); Statistics (62-XX); Computer science (68-XX)

PROXIMUS

Software Authors:   M. Koyuturk; A. Grama
Referenced in: 11 Publications (2006–2022)
Related Software: UCI-ml; ComiRNet; PAL-Tiling; FABIA; DENCLUE; k-means++; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Statistics (62-XX); Computer science (68-XX)

SeqLog

Software Authors:   Lee, Sau; De Raedt, Luc
Referenced in: 12 Publications (2004–2011)
Related Software: GOLEM; Aleph; PrefixSpan; gSpan; ProGolem; XPath; …
Main Fields: Computer science (68-XX)

Sparsity

Software Authors:   EJ Im, K Yelick, R Vuduc
Referenced in: 10 Publications (2005–2018)
Related Software: SparseMatrix; PETSc; MKL; Trilinos; CUDA; ATLAS; …
Main Fields: Partial differential equations (35-XX); Probability theory and stochastic processes (60-XX); Numerical analysis (65-XX)

CAV

Software Authors:   Nakamura, Brian
Referenced in: 12 Publications (2011–2020)
Related Software: GJsqfree; GJSAW; GJseries; SPGJ; SYMGJ; BLANKS; …
Main Fields: Combinatorics (05-XX); Order, lattices, ordered algebraic structures (06-XX); Associative rings and algebras (16-XX)

Isomap

Software Authors:   Tenenbaum, J. B., V. de Silva, J. C. Langford
Referenced in: 10 Publications (2007–2019)
Related Software: UCI-ml; R; Spalart-Allmaras; TAU; Algorithm 97; clusfind; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Fluid mechanics (76-XX)

JHotDraw

Software Authors:   Erich Gamma; Thomas Eggenschwiler
Referenced in: 4 Publications (2007–2010)
Related Software: AspectJ; CodeQuest; XSB; Choco; Ant; ASP.NET; …
Main Fields: Statistics (62-XX); Computer science (68-XX)

MacSpin

Software Authors:   Donoho, A.W.; Donoho, D.L.; Gasko, M.
Referenced in: 9 Publications (1989–2006)
Related Software: LISP-STAT; R; ViSta; Mondrian; MANET; UsingR; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

PermLab

Software Authors:   Michael Albert
Referenced in: 12 Publications (2014–2020)
Related Software: OEIS; automata; GAP; SageMath; BinaryTrees
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

stpp

Software Authors:   Gabriel E, Rowlingson B, Diggle P
Referenced in: 6 Publications (2014–2022)
Related Software: R; RandomFields; spacetime; gstat; CompRandFld; geoR; …
Main Fields: General and overarching topics; collections (00-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

TETRA

Software Authors:   Teeling H, Waldmann J, Lombardot T, Bauer M, Glöckner FO
Referenced in: 2 Publications (2011–2020)
Related Software: MEGAN; TACOA; BLAST; PSI-BLAST; DOTUR; Pfam; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

ZeroMQ

Software Authors:   iMatix
Referenced in: 4 Publications (2016–2021)
Related Software: Python; TensorFlow; Jupyter; Parsl; DLHub; Swift; …
Main Fields: Computer science (68-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

MIQR

Software Authors:   Li, Na; Saad, Yousef
Referenced in: 11 Publications (2006–2022)
Related Software: SparseMatrix; SuiteSparseQR; LSQR; HSL; SuitSparseQR; LSMR; …
Main Fields: Combinatorics (05-XX); Linear and multilinear algebra; matrix theory (15-XX); Partial differential equations (35-XX)

Mixnet

Software Authors:   Picard, F., Miele, V., Daudin, J.-J., Cottret, L., Robin, S.
Referenced in: 10 Publications (2010–2022)
Related Software: igraph; StOCNET; MAVisto; Kavosh; FANMOD; Cytoscape; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Numerical analysis (65-XX)