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Found 38 Software Packages (Results 1–38)

Gudhi

Software Authors:   INRIA; Clement Maria; Jean-Daniel Boissonnat; Marc Glisse; Mariette Yvinec
Referenced in: 40 Publications (2014–2022)
Related Software: PHAT; Dionysus; javaPlex; Ripser; TDA; Perseus; …
Main Fields: Algebraic topology (55-XX); Statistics (62-XX); Numerical analysis (65-XX)

javaPlex

Software Authors:   Mikael Vejdemo-Johansson; Henry Adams; Andrew Tausz
Referenced in: 42 Publications (2014–2022)
Related Software: Ripser; Gudhi; Perseus; Dionysus; PHAT; jHoles; …
Main Fields: Dynamical systems and ergodic theory (37-XX); Algebraic topology (55-XX); Statistics (62-XX)

PHAT

Software Authors:   Ulrich Bauer; Michael Kerber; Jan Reininghaus; Hubert Wagner
Referenced in: 37 Publications (2014–2022)
Related Software: Gudhi; Dionysus; Ripser; Perseus; javaPlex; PersistenceImages; …
Main Fields: Combinatorics (05-XX); Algebraic topology (55-XX); Statistics (62-XX)

PersistenceImages

Software Authors:   Henry Adams, Sofya Chepushtanova, Tegan Emerson, Eric Hanson, Michael Kirby, Francis Motta, Rachel Neville, Chris Peterson, Patrick Shipman, Lori Ziegelmeier
Referenced in: 40 Publications (2016–2022)
Related Software: GitHub; Ripser; PHAT; Scikit; Gudhi; Persistence Landscape; …
Main Fields: Algebraic topology (55-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

Dionysus

Software Authors:   D. Morozov
Referenced in: 35 Publications (2011–2022)
Related Software: PHAT; Gudhi; Ripser; Perseus; javaPlex; GitHub; …
Main Fields: Combinatorics (05-XX); Algebraic topology (55-XX); Statistics (62-XX)

CliqueTop

Software Authors:   Giusti C
Referenced in: 30 Publications (2015–2022)
Related Software: Holes; Ripser; GitHub; javaPlex; PersistenceImages; Gudhi; …
Main Fields: Combinatorics (05-XX); Algebraic topology (55-XX); Statistics (62-XX)

Perseus

Software Authors:   Vidit Nanda
Referenced in: 30 Publications (2013–2022)
Related Software: Dionysus; javaPlex; Gudhi; PHAT; Ripser; TDA; …
Main Fields: Combinatorics (05-XX); Algebraic topology (55-XX); Manifolds and cell complexes (57-XX)

TDA

Software Authors:   Brittany T. Fasy, Jisu Kim, Fabrizio Lecci, Clement Maria, Vincent Rouvreau, Clement Maria, Dmitriy Morozov, Ulrich Bauer, Michael Kerber, Jan Reininghaus
Referenced in: 25 Publications (2017–2022)
Related Software: Gudhi; Ripser; Dionysus; Persistence Landscape; GitHub; PHAT; …
Main Fields: Combinatorics (05-XX); Algebraic topology (55-XX); Statistics (62-XX)

Persistence Landscape

Software Authors:   Bubenik, Peter; Dłotko, Paweł
Referenced in: 18 Publications (2017–2022)
Related Software: TDA; Ripser; PersistenceImages; GitHub; Gudhi; PHAT; …
Main Fields: Algebraic topology (55-XX); Statistics (62-XX); Numerical analysis (65-XX)

Eirene

Software Authors:   Gregory Henselman, Robert Ghrist
Referenced in: 11 Publications (2018–2022)
Related Software: Ripser; GitHub; PHAT; Julia; Gudhi; Perseus; …
Main Fields: Combinatorics (05-XX); Algebraic topology (55-XX); Manifolds and cell complexes (57-XX)

Holes

Software Authors:   G. Petri
Referenced in: 13 Publications (2014–2021)
Related Software: CliqueTop; Gudhi; javaPlex; KONECT; NetworkX; jHoles; …
Main Fields: Combinatorics (05-XX); Dynamical systems and ergodic theory (37-XX); Algebraic topology (55-XX)

jPlex

Software Authors:   Sexton, Harlan; Vejdemo-Johansson, Mikael
Referenced in: 11 Publications (2011–2021)
Related Software: Dionysus; Perseus; Gudhi; Ripser; GitHub; PHAT; …
Main Fields: Algebraic topology (55-XX); Statistics (62-XX); Numerical analysis (65-XX)

LearningAlgebraicVarieties

Software Authors:   Breiding, Paul; Kalisnik, Sara; Sturmfels, Bernd; Weinstein, Madeleine
Referenced in: 11 Publications (2018–2022)
Related Software: Macaulay2; Bertini; IntDim; GitHub; javaPlex; HomotopyContinuation; …
Main Fields: Commutative algebra (13-XX); Algebraic geometry (14-XX); Algebraic topology (55-XX)

jHoles

Software Authors:   Binchi, Jacopo; Merelli, Emanuela; Rucco, Matteo; Petri, Giovanni; Vaccarino, Francesco
Referenced in: 10 Publications (2014–2022)
Related Software: javaPlex; PHAT; Perseus; Gudhi; Ripser; Dionysus; …
Main Fields: Combinatorics (05-XX); Algebraic topology (55-XX); Numerical analysis (65-XX)

SimBa

Software Authors:   Dey, Tamal K.; Shi, Dayu; Wang, Yusu
Referenced in: 9 Publications (2016–2021)
Related Software: PHAT; Gudhi; Sophia; Dionysus; GitHub; SimPers; …
Main Fields: Algebraic topology (55-XX); Computer science (68-XX)

Ripser.py

Software Authors:   Christopher Tralie, Nathaniel Saul, Rann Bar-On
Referenced in: 7 Publications (2019–2022)
Related Software: Scikit; Ripser; PersistenceImages; GitHub; SciPy; Python; …
Main Fields: Dynamical systems and ergodic theory (37-XX); Algebraic topology (55-XX); Statistics (62-XX)

Sophia

Software Authors:   Kerber, Michael; Schreiber, Hannah
Referenced in: 8 Publications (2017–2021)
Related Software: SimBa; PHAT; Gudhi; GitHub; Homology; kepler98; …
Main Fields: Combinatorics (05-XX); Algebraic topology (55-XX); Statistics (62-XX)

TopologyNet

Software Authors:   Zixuan Cang, Guo-Wei Wei
Referenced in: 8 Publications (2020–2022)
Related Software: Ripser; TDA; PersistenceImages; javaPlex; Dionysus; PHAT; …
Main Fields: Combinatorics (05-XX); Differential geometry (53-XX); Algebraic topology (55-XX)

RIVET

Software Authors:   Michael Lesnick, Matthew Wright
Referenced in: 4 Publications (2020–2022)
Related Software: PHAT; Ripser; Eirene; Magma; Macaulay2; CoCoA; …
Main Fields: Commutative algebra (13-XX); Algebraic topology (55-XX); Statistics (62-XX)

Flagser

Software Authors:   Daniel Luetgehetmann, Dejan Govc, Jason Smith, Ran Levi
Referenced in: 3 Publications (2020–2021)
Related Software: Ripser; GitHub; Scikit; Persistence Landscape; Gudhi; PHAT; …
Main Fields: Combinatorics (05-XX); Algebraic topology (55-XX); Statistics (62-XX)

ShortLoop

Software Authors:   Dey, Tamal K.; Sun, Jian; Wang, Yusu
Referenced in: 5 Publications (2011–2020)
Related Software: QuadCover; CGAL; Chemotaxis
Main Fields: Combinatorics (05-XX); Algebraic topology (55-XX); Statistics (62-XX)

DIPHA

Software Authors:   Bauer U, Kerber M, Reininghaus J.
Referenced in: 2 Publications (2019–2021)
Related Software: Ripser; Gudhi; TDA; Dionysus; javaPlex; PHAT; …
Main Fields: Algebraic topology (55-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

giotto-tda

Software Authors:   Tauzin, Guillaume; Lupo, Umberto; Tunstall, Lewis; Pérez, Julian Burella; Caorsi, Matteo; Medina-Mardones, Anibal M.; Dassatti, Alberto; Hess, Kathryn
Referenced in: 4 Publications (2021–2022)
Related Software: Ripser.py; GitHub; Gudhi; Scikit; PersistenceImages; PersistenceCurves; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Category theory; homological algebra (18-XX)

TDAstats

Software Authors:   Raoul Wadhwa, Andrew Dhawan, Drew Williamson, Jacob Scott, Jason Cory Brunson, Shota Ochi
Referenced in: 4 Publications (2019–2022)
Related Software: TDA; Steerable pyramid; PyTorch; ggplot2; R; evd; …
Main Fields: Algebraic topology (55-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

Sparse-Dowker-Nerves

Software Authors:   Brun, Morten; Blaser, Nello
Referenced in: 3 Publications (2019–2022)
Related Software: SimBa; GitHub
Main Fields: Algebraic topology (55-XX); Statistics (62-XX)

CTL

Software Authors:   Lewis R
Referenced in: 2 Publications (2019–2021)
Related Software: Ripser; GitHub; jPlex; Dionysus; PHAT; javaPlex; …
Main Fields: Algebraic topology (55-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

Cubical Ripser

Software Authors:   Shizuo Kaji, Takeki Sudo, Kazushi Ahara
Referenced in: 0 Publications
Related Software: Ripser++; Flagser; PersistenceDiagrams.jl; ComputationalHomology.jl; Sparips.jl; PersistentCohomology.jl; …
Main Fields:

HERMES

Software Authors:   Wang, Rui; Zhao, Rundong; Ribando-Gros, Emily; Chen, Jiahui; Tong, Yiying; Wei, Guo-Wei
Referenced in: 2 Publications (2021)
Related Software: Gudhi; HomotopyContinuation; Hom4PS-3; Bertini; NumPy; PHCpack; …
Main Fields: Algebraic topology (55-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)

phom

Software Authors:   A. Tausz
Referenced in: 2 Publications (2018–2021)
Related Software: Ripser; GitHub; Dionysus; HYPHA; libstick; Ripser++; …
Main Fields: Convex and discrete geometry (52-XX); Algebraic topology (55-XX); Statistical mechanics, structure of matter (82-XX)

Ripserer.jl

Software Authors:   Čufar, Matij
Referenced in: 1 Publication (2021)
Related Software: Ripser++; Eirene; Flagser; PersistenceDiagrams.jl; ComputationalHomology.jl; Sparips.jl; …
Main Fields: Algebraic topology (55-XX)

ANAPT

Software Authors:   Myers, Audun D.; Khasawneh, Firas A.; Fasy, Brittany T.
Referenced in: 1 Publication (2022)
Related Software: teaspoon
Main Fields: Algebraic topology (55-XX); Statistics (62-XX)

HYPHA

Software Authors:   Zhang, S., Xiao, M., Guo, C., Geng, L., Wang, H., Zhang, X.
Referenced in: 1 Publication (2021)
Related Software: libstick; Ripser++; Ripserer.jl; phom; CTL; Ripser; …
Main Fields: Algebraic topology (55-XX)

libstick

Software Authors:   Huber, S., H. Edelsbrunner, J. Harer
Referenced in: 1 Publication (2021)
Related Software: HYPHA; Ripser++; Ripserer.jl; phom; CTL; Ripser; …
Main Fields: Algebraic topology (55-XX)

lookout

Software Authors:   Sevvandi Kandanaarachchi, Rob Hyndman
Referenced in: 1 Publication (2022)
Related Software: evd; outselect; SiZer; TDAstats; ismev
Main Fields: Statistics (62-XX)

PHoDMSs

Software Authors:   Nate Clause, Woojin Kim
Referenced in: 1 Publication (2020)
Related Software: Boids; Formigramator; GitHub; Dionysus
Main Fields: Algebraic topology (55-XX); Statistics (62-XX)

pyrivet

Software Authors:   –
Referenced in: 1 Publication (2020)
Related Software: RIVET; GitHub
Main Fields: Algebraic topology (55-XX); Statistics (62-XX)

Sparips.jl

Software Authors:   Bernhard Brehm, Hanne Hardering
Referenced in: 0 Publications
Related Software: Ripser++; Flagser; PersistenceDiagrams.jl; ComputationalHomology.jl; PersistentCohomology.jl; Eirene; …
Main Fields:

teaspoon

Software Authors:   Elizabeth Munch; Firas Khasawneh
Referenced in: 1 Publication (2022)
Related Software: ANAPT
Main Fields: Algebraic topology (55-XX); Statistics (62-XX)