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Found 44 Software Packages (Results 1–44)

Eigenstrat

Software Authors:   Alkes L Price, Nick J Patterson, Robert M Plenge, Michael E Weinblatt, Nancy A Shadick, David Reich
Cited in: 56 Publications (2007–2022)
Related Software: STRUCTURE; PLINK; R; Frappe; leapp; IMPUTE; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Statistics (62-XX); Numerical analysis (65-XX)

abcrf

Software Authors:   Louis Raynal, Jean-Michel Marin, Pierre Pudlo, Mathieu Ribatet, Christian P. Robert, Arnaud Estoup
Cited in: 20 Publications (2018–2022)
Related Software: abc; DIYABC; R; bayess; ranger; AABC; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

Mesquite

Software Authors:   Maddison, W.P.;D.R. Maddison
Cited in: 12 Publications (2006–2021)
Related Software: R; kdetrees; ape; Castor; ggtree; IcyTree; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

ABCtoolbox

Software Authors:   Daniel Wegmann, Christoph Leuenberger, Samuel Neuenschwander, Laurent Excoffier
Cited in: 7 Publications (2012–2020)
Related Software: abctools; PopABC; abc; ABrox; DIYABC; msABC; …
Main Fields: Ordinary differential equations (34-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

MixMoGenD

Software Authors:   Toussile, Wilson; Gassiat, Elisabeth
Cited in: 6 Publications (2009–2019)
Related Software: STRUCTURE; R; mixsmsn; SAS/STAT; SAS; clustMD; …
Main Fields: Convex and discrete geometry (52-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

simuPOP

Software Authors:   Kimmel M, Peng B
Cited in: 5 Publications (2008–2020)
Related Software: R; ROCR; CRAN; genMOSS; fastsimcoal; SIMCOAL; …
Main Fields: Operator theory (47-XX); Probability theory and stochastic processes (60-XX); Numerical analysis (65-XX)

Arlequin

Software Authors:   Excoffier, L.; Laval, G.; Schneider, S.
Cited in: 5 Publications (2002–2016)
Related Software: PHYLIP; fastsimcoal; SIMCOAL; ForSim; BEAST; simuPOP; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

Bio++

Software Authors:   Dutheil J, Boussau B
Cited in: 3 Publications (2011–2019)
Related Software: SplitsTree; MrBayes; MulRF; iGTP; ExaBayes; pIQPNNI; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Operations research, mathematical programming (90-XX)

fastSTRUCTURE

Software Authors:   Raj A, Stephens M, Pritchard JK
Cited in: 5 Publications (2017–2021)
Related Software: STRUCTURE; R; Frappe; plyr; LBFGS-B; ggplot2; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)

genetics

Software Authors:   Gregory Warnes, Gregor Gorjanc, Friedrich Leisch, Michael Man
Cited in: 0 Publications
Related Software: R; MICE; Bioconductor; gap; LDheatmap; HWEintrinsic; …
Main Fields:

WhatsHap

Software Authors:   Patterson M, Marschall T, Pisanti N, van Iersel L, Stougie L, Klau GW, Schönhuth A
Cited in: 4 Publications (2017–2018)
Related Software: HapCol; ViennaRNA; QAPgrid; IgTree; Decombinator; SoDA2; …
Main Fields: General and overarching topics; collections (00-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

GENEPOP

Software Authors:   Michel Raymond; Francois Rousset
Cited in: 3 Publications (2002–2010)
Related Software: R; FRANz; Cervus; PARENTE; FaMoz; lattice; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

pegas

Software Authors:   Emmanuel Paradis; Klaus Schliep; Alastair Potts; David Winter
Cited in: 3 Publications (2012–2016)
Related Software: R; AstroPhi; GPUPEGAS; ZEUS-3D; BETHE-hydro; ENZO; …
Main Fields: Probability theory and stochastic processes (60-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

FTEC

Software Authors:   Reppell, M.; Boehnke, M.; Zöllner, S.
Cited in: 3 Publications (2014–2018)
Related Software: Eigenstrat; ADZE; iGLASS
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Computer science (68-XX)

Geneland

Software Authors:   Guillot G, Mortier F, Estoup A
Cited in: 2 Publications (2009–2015)
Related Software: R; STRUCTURE; phytools; MrBayes; dismo; BEAUti; …
Main Fields: Statistics (62-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX); Biology and other natural sciences (92-XX)

Serial SimCoal

Software Authors:   Anderson, C. N. K., Ramakrishnan, U., Chan, Y. L., Hadly, E. A.
Cited in: 2 Publications (2016–2018)
Related Software: abc; PopABC; REJECTOR; msBayes; ABCtoolbox; abcpmc; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

zt

Software Authors:   Eric Bonnet; Yves de Peer
Cited in: 2 Publications (2007–2009)
Related Software: Pfam; GSL; R
Main Fields: Game theory, economics, finance, and other social and behavioral sciences (91-XX); Biology and other natural sciences (92-XX)

ASMap

Software Authors:   Julian Taylor, David Butler
Cited in: 0 Publications
Related Software: R; JoinMap; Lep-MAP; ICIMapping; onemap; MAPMAKER; …
Main Fields:

ogaraK

Software Authors:   Tiago Antao, Ian M. Hastings
Cited in: 1 Publication (2017)
Related Software:
Main Fields: Biology and other natural sciences (92-XX)

SPAGEDi

Software Authors:   Olivier Hardy; Xavier Vekemans
Cited in: 2 Publications (2010–2012)
Related Software: spBayes; pyuvdata; INLA; GMRFLib; WinBUGS; spatstat; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX)

TeraPCA

Software Authors:   Aritra Bose, Vassilis Kalantzis, Eugenia-Maria Kontopoulou, Mai Elkady, Peristera Paschou, Petros Drineas
Cited in: 2 Publications (2021–2022)
Related Software: STRUCTURE; ThreSPCA; CluStrat; clusterProfiler; RandNLA; EVSL; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Statistics (62-XX); Numerical analysis (65-XX)

TESD

Software Authors:   Grégory Deceliere, Yann Letrillard, Sandrine Charles, Christian Biémont
Cited in: 1 Publication (2008)
Related Software:
Main Fields: Probability theory and stochastic processes (60-XX); Biology and other natural sciences (92-XX)

Aevol

Software Authors:   Bérénice Batut, David P Parsons, Stephan Fischer, Guillaume Beslon, Carole Knibbe
Cited in: 1 Publication (2016)
Related Software: ALF; INDELible; SimPhy
Main Fields: Biology and other natural sciences (92-XX)

BPEC

Software Authors:   Ioanna Manolopoulou, Axel Hille
Cited in: 0 Publications
Related Software: R; phytools; MrBayes; dismo; Geneland; BEAUti; …
Main Fields:

chifish

Software Authors:   Nils Ryman
Cited in: 1 Publication (2017)
Related Software: SFAPS; MACOED; AntEpiSeeker; FAACOSE; eQTL epistasis; IMPUTE
Main Fields: Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX); Systems theory; control (93-XX)

DeltaS

Software Authors:   Gregorius, Hans-rolf; Gillet, Elizabeth M.; Ziehe, Martin
Cited in: 1 Publication (2003)
Related Software:
Main Fields: Statistics (62-XX)

kgp

Software Authors:   Stephen Turner
Cited in: 0 Publications
Related Software: pedtools; ggplot2; leaflet; pedsuite; skater; tidyverse; …
Main Fields:

momi2

Software Authors:   Kamm, Jack; Terhorst, Jonathan; Durbin, Richard; Song, Yun S.
Cited in: 1 Publication (2020)
Related Software: fastsimcoal; PoMo; Autograd; GATK; ABCtoolbox
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

4P

Software Authors:   Andrea Benazzo; Alex Panziera; Giorgio Bertorelle
Cited in: 0 Publications
Related Software: selscan; SLiM 2; SeleDiff
Main Fields:

Pegas

Software Authors:   Paradis, Emmanuel
Cited in: 0 Publications
Related Software: pegas; R
Main Fields:

PGEToolbox

Software Authors:   James J. Cai
Cited in: 1 Publication (2010)
Related Software: VanInverse; MOCHA; ARPREC; mctoolbox; SUMMA; ScaLAPACK
Main Fields: Numerical analysis (65-XX); Operations research, mathematical programming (90-XX)

PopGenome

Software Authors:   Bastian Pfeifer, Ulrich Wittelsbuerger, Heng Li, Bob Handsaker
Cited in: 0 Publications
Related Software: rehh; R; zalpha
Main Fields:

PyPop

Software Authors:   Lancaster, Alex; Nelson, Mark P.; Meyer, Diogo; Thomson, Glenys; Single, Richard M.
Cited in: 1 Publication (2002)
Related Software: Libxslt; GENEPOP; Python; Arlequin; PHYLIP; NumPy; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

SeleDiff

Software Authors:   Xin Huang; Li Jin; Yungang He
Cited in: 0 Publications
Related Software: selscan; SLiM 2; 4P
Main Fields:

SimPrily

Software Authors:   Ariella L.Gladstein; Consuelo D. Quinto-Cortés; Julian L. Pistorius; David Christy; Logan Gantner; Blake L. Joyce
Cited in: 0 Publications
Related Software: ABrox; abctools; ABCtoolbox; Pegasus; Docker; DIYABC; …
Main Fields:

SpectralTDF

Software Authors:   Steinrücken, M.; Jewett, E. M.; Song, Y. S.
Cited in: 1 Publication (2018)
Related Software: IQ-TREE; fastDNAml
Main Fields: Probability theory and stochastic processes (60-XX); Biology and other natural sciences (92-XX)

tess3r

Software Authors:   Caye, Kevin; Jay, Flora; Michel, Olivier; François, Olivier
Cited in: 1 Publication (2018)
Related Software: Frappe; AmiGO; LEA; fastSTRUCTURE; ANGSD; STRUCTURE; …
Main Fields: Statistics (62-XX)

VarFish

Software Authors:   M. Holtgrewe O. Stolpe M. Nieminen S. Mundlos A. Knaus U. Kornak D. Seelow L. Segebrecht M. Spielmann B. Fischer-Zirnsak F. Boschann U. Scholl N. Ehmke D. Beule
Cited in: 0 Publications
Related Software: DigestiFlow; Django; Python; SODAR Core
Main Fields:

zalpha

Software Authors:   Clare Horscroft
Cited in: 0 Publications
Related Software: rehh; PopGenome; R
Main Fields:

diveRsity

Software Authors:   Kevin Keenan
Cited in: 0 Publications
Related Software:
Main Fields:

FinePop

Software Authors:   Reiichiro Nakamichi, Hirohisa Kishino, Shuichi Kitada
Cited in: 0 Publications
Related Software:
Main Fields:

MetaPopGen

Software Authors:   M. Andrello, S. Manel
Cited in: 0 Publications
Related Software:
Main Fields:

NAM

Software Authors:   Alencar Xavier, William Muir, Katy Rainey, Shizhong Xu
Cited in: 0 Publications
Related Software:
Main Fields:

optiSel

Software Authors:   Robin Wellmann
Cited in: 0 Publications
Related Software:
Main Fields: