PROSITE Software Authors: Sigrist, C.J.A., Cerutti, L., Hulo, N., Gattiker, A., Falquet, L., Pagni, M., Bairoch, A., Bucher, P. Cited in: 19 Publications (2004–2022) Related Software: Pfam; BLAST; PSI-BLAST; ClustalW; UniProt; KEGG; … Main Fields: –
InterProScan Software Authors: E. Quevillon, V. Silventoinen, S. Pillai, N. Harte, N. Mulder, R. Apweiler, R. Lopez Cited in: 6 Publications (2009–2022) Related Software: BLAST; PSI-BLAST; UniProt; EasyGene; PROSITE; MultiLoc2; … Main Fields: –
SMART Software Authors: Letunic, I., Copley, R.R., Schmidt, S., Ciccarelli, F.D., Doerks, T., Schultz, J., Ponting, C.P., Bork, P. Cited in: 7 Publications (2006–2019) Related Software: Pfam; UniProt; PROSITE; ClustalW; PSI-BLAST; ELM; … Main Fields: –
MEME Software Authors: Bailey, T.L., Williams, N., Misleh, C., Li, W.W. Cited in: 9 Publications (2011–2018) Related Software: BLAT; R; DIALIGN; ANNOVAR; KEGG; WEKA; … Main Fields: –
ELM Software Authors: Pål Puntervoll, Rune Linding, Christine Gemünd, et. al. Cited in: 1 Publication (2016) Related Software: PROSITE; Cd-hit; Phospho.ELM; IUPred; GlobPlot; R; … Main Fields: –
GlobPlot Software Authors: Rune Linding, Robert B. Russell, Victor Neduva and Toby J. Gibson Cited in: 4 Publications (2008–2019) Related Software: IUPred; RONN; FoldIndex; FoldUnfold; DISOPRED; ELM; … Main Fields: –
MotifMiner Software Authors: Coatney, M.; Parthasarathy, S. Cited in: 1 Publication (2013) Related Software: CLOSET; UCI-ml; WordSpy; WebMOTIFS; fREDUCE; SPACER; … Main Fields: –
Cluster-C Software Authors: Mohseni-Zadeh, S.; Brézellec, P.; Risler, J.-L. Cited in: 6 Publications (2004–2013) Related Software: BLAST; PSI-BLAST; Algorithm 457; MrBayes; ProClust; MEGA; … Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)
InterPreTS Software Authors: Aloy, P.; Russell, RB Cited in: 4 Publications (2011–2019) Related Software: PIPE; MCODE; DIMA; STRING; PreSPI; LIBSVM; … Main Fields: –
ProClust Software Authors: Pipenbacher P., Schliep A., Schneckener S., Schonhuth A., Schomburg D., Schrader R. Cited in: 4 Publications (2007–2020) Related Software: BLAST; PSI-BLAST; GeneRAGE; Algorithm 457; MrBayes; Cluster-C; … Main Fields: –
PDB-REPRDB Software Authors: Noguchi, T.; Akiyama, Y. Cited in: 1 Publication (2009) Related Software: MODELLER; PROMOTIF; VMD; R; BLAST; PSI-BLAST; … Main Fields: –
PreSPI Software Authors: D.S. Han, H.S. Kim, W.H. Jang, S.D. Lee, J.K. Suh Cited in: 3 Publications (2008–2019) Related Software: InterPreTS; MCODE; BioGRID; CFinder; UniProt; KEGG; … Main Fields: –
SUPERFAMILY Software Authors: Derek Wilson, Ralph Pethica, Yiduo Zhou, Charles Talbot, Christine Vogel, Martin Madera, Cyrus Chothia, Julian Gough Cited in: 2 Publications (2010–2016) Related Software: Ontobee; PlantTFDB; eggNOG; ELM; dbCAN; antiSMASH; … Main Fields: –
DIMA Software Authors: Pagel P, Oesterheld M, Stümpflen V, Frishman D. Cited in: 2 Publications (2011–2019) Related Software: InterPreTS; MCODE; OrthoMCL; IntScore; STRING; IntAct; … Main Fields: –
DOMpro Software Authors: J. L. Cheng, M. J. Sweredoski, P. Baldi Cited in: 3 Publications (2011–2020) Related Software: UProC; LIBSVM; Scikit; Mathematica; I-TASSER; SW1PerS; … Main Fields: –
MUMMALS Software Authors: Pei J, Grishin NV Cited in: 3 Publications (2015–2017) Related Software: MUSCLE; ClustalW; ProbCons; MAFFT; T-coffee; Balibase; … Main Fields: –
PlantTFDB Software Authors: Jin J, Tian F, Yang DC, Meng YQ, Kong L, Luo J, Gao G Cited in: 2 Publications (2016–2019) Related Software: R; NOMAD; GeneNetWeaver; Path2Models; SOSlib; LASSIE; … Main Fields: –
ADP_EM Software Authors: José Ignacio Garzón, Julio Kovacs, Ruben Abagyan, Pablo Chacón Cited in: 1 Publication (2016) Related Software: Ontobee; PlantTFDB; eggNOG; ELM; dbCAN; antiSMASH; … Main Fields: –
CATH Software Authors: Sillitoe I et al Cited in: 2 Publications (2017–2018) Related Software: InterProScan; SeqVis; CodonPhyML; jModelTest; DensiTree; ProtTest 3; … Main Fields: –
EVEREST Software Authors: Portugaly E, Linial N, Linial M Cited in: 1 Publication (2017) Related Software: UniProt; ClustalW; HMMER; SeqVis; CodonPhyML; jModelTest; … Main Fields: –
KineticDB Software Authors: Bogatyreva, N. S.; Osypov, A. A.; Ivankov, D. N. Cited in: 2 Publications (2013–2015) Related Software: iEzy-drug; iMethyl-PseAAC; iCTX-Type; iRSpot-PseDNC; iRSpot-TNCPseAAC; iNuc-PseKNC; … Main Fields: –
PAL2NAL Software Authors: Suyama, M.; Torrents, D.; Bork, P. Cited in: 1 Publication (2018) Related Software: PAML; MrBayes; DAMBE; MUSCLE; MEGA; MODELTEST; … Main Fields: –
SCOWLP Software Authors: Joan Teyra, Andreas Doms, Michael Schroeder, M Teresa Pisabarro Cited in: 1 Publication (2015) Related Software: COCOMAPS; ProtorP; CCP4; AMBER; NOXclass; PIBASE; … Main Fields: –
CyclinPred Software Authors: Kalita, M. K.; Nandal, U. K.; Pattnaik, A.; Sivalingam, A.; Ramasamy, G.; Kumar, M.; Raghava, G. P.; Gupta, D. Cited in: 2 Publications (2016–2021) Related Software: UniProt; PseAAC; iRSpot-GAEnsC; PseAAC-General; iSS-Hyb-mRMR; iPPI-Esml; … Main Fields: –
DBAli tools Software Authors: Marc A. Marti-Renom, Ursula Pieper, M. S. Madhusudhan, Andrea Rossi, Narayanan Eswar, Fred P. Davis, Fátima Al-Shahrour, Joaquín Dopazo, Andrej Sali Cited in: 1 Publication (2016) Related Software: Ontobee; PlantTFDB; eggNOG; ELM; dbCAN; antiSMASH; … Main Fields: –
DelPhiForce Software Authors: Li L, Jia Z, Peng Y, Chakravorty A, Sun L, Alexov E. Cited in: 2 Publications (2019–2021) Related Software: DelPhi; DelPhiPKa; VMD; PDB2PQR; Chimera; NAMD Main Fields: –
DOMINE Software Authors: Yellaboina S, Tasneem A, Zaykin DV, Raghavachari B, Jothi R Cited in: 1 Publication (2018) Related Software: SQUAD; ClueGO; gcrma; RedeR; STRINGdb; ANIMO; … Main Fields: –
FancyGene Software Authors: D. Rambaldi; F. D. Ciccarelli Cited in: 0 Publications Related Software: BWA; dbAutoMaker; NovelSNPer; Artemis; FunctSNP; PERL; … Main Fields: –
Gene3D Software Authors: Yeats C et al Cited in: 1 Publication (2017) Related Software: SeqVis; CodonPhyML; jModelTest; DensiTree; ProtTest 3; REGANOR; … Main Fields: –
GeneReporter Software Authors: A. Bartsch, B. Bunk, I. Haddad, J. Klein, R. Münch, T. Johl, U. Kärst, L. Jänsch, D. Jahn, and I. Retter. Cited in: 1 Publication (2014) Related Software: Sourcerer; Wumpus Main Fields: –
MeDor Software Authors: Philippe Lieutaud, Bruno Canard, Sonia Longh Cited in: 1 Publication (2016) Related Software: IUPred; Ontobee; PlantTFDB; eggNOG; ELM; dbCAN; … Main Fields: –
PIBASE Software Authors: Davis FP, Sali A Cited in: 1 Publication (2018) Related Software: SQUAD; ClueGO; gcrma; RedeR; STRINGdb; ANIMO; … Main Fields: –
PPI_SVM Software Authors: Chatterjee, P.; Basu, S.; Kundu, M., Nasipuri M, Plewczynski D. Cited in: 2 Publications (2019) Related Software: GitHub; DeepPPI; AlexNet; Adam; ImageNet; darch; … Main Fields: –
SCOOP Software Authors: Bateman A, Finn RD Cited in: 1 Publication (2015) Related Software: EMBOSS; Minimus; EMIRGE; ViennaRNA; TagCleaner; OligoWalk; … Main Fields: –
SCOPmap Software Authors: Sara Cheek, Yuan Qi, S Sri Krishna Lisa N Kinch, Nick V Grishin Cited in: 2 Publications (2008–2009) Related Software: TM-align; SARSA; BioJava; BLAST; PSI-BLAST; ScalaBLAST Main Fields: –
SOCKET Software Authors: Walshaw, J.; Woolfson, D.N. Cited in: 2 Publications (2008–2017) Related Software: InterPreTS; Paircoil2; HIPPIE; STRING; UniProt; MUSCLE; … Main Fields: –
TreeWiz Software Authors: Rost U, Bornberg-Bauer E Cited in: 2 Publications (2005–2017) Related Software: BLAT; KEGG; PARAssign; Numbat; WhatsHap; INDDGO; … Main Fields: –
COBALT Software Authors: Papadopoulos, J.S., Agarwala, R. Cited in: 1 Publication (2013) Related Software: ProtTest 3; iGTP; MrBayes; Gegenees; POY; MLTreeMap; … Main Fields: –
DeepText2GO Software Authors: Ronghui You; Xiaodi Huang; Shanfeng Zhu Cited in: 1 Publication (2022) Related Software: Tensor2Tensor; COFACTOR; DeepGOPlus; DeepGO; QAUST; ProTranslator; … Main Fields: –
diffuStats Software Authors: Sergio Picart-Armada, Alexandre Perera-Lluna Cited in: 1 Publication (2021) Related Software: RANKS; EGAD; AptRank; GeneMANIA; DisGeNET; STRING Main Fields: –
eSNV-detect Software Authors: Tang, Xiaojia; Baheti, Saurabh; Kalari, Krishna R. Cited in: 1 Publication (2018) Related Software: MapSplice; Strelka; HaploReg; Salmon; ZOOM; SomaticSniper; … Main Fields: –
fastSCOP Software Authors: Tung, Chi-Hua; Yang, Jinn-Moon Cited in: 0 Publications Related Software: – Main Fields: –
GOLabeler Software Authors: You, R.; Zhang, Z.; Xiong, Y.; Sun, F.; Mamitsuka, H.; Zhu, S. Cited in: 1 Publication (2022) Related Software: Tensor2Tensor; COFACTOR; DeepGOPlus; DeepGO; QAUST; ProTranslator; … Main Fields: Biology and other natural sciences (92-XX)
HPMV Software Authors: – Cited in: 1 Publication (2016) Related Software: Ontobee; PlantTFDB; eggNOG; ELM; dbCAN; antiSMASH; … Main Fields: –
PaxDb Software Authors: Wang M, Weiss M, Simonovic M, Haertinger G, Schrimpf SP, Hengartner MO, von Mering C Cited in: 1 Publication (2018) Related Software: SQUAD; ClueGO; gcrma; RedeR; STRINGdb; ANIMO; … Main Fields: –
PIRSF Software Authors: Nikolskayaw QN, Arighi CN, Huang H, Barker WC, Wu CH Cited in: 1 Publication (2017) Related Software: SeqVis; CodonPhyML; jModelTest; DensiTree; ProtTest 3; REGANOR; … Main Fields: –
PLAAC Software Authors: Lancaster, Alex K, Andrew Nutter - Upham, Susan Lindquist, Oliver D King Cited in: 0 Publications Related Software: propy; Pegasos; AGGRESCAN; MISVM; Python; pyLEMMINGS Main Fields: –
porthoDom Software Authors: Bitard-Feildel, T.; Kemena, C.; Greenwood, J. M.; Bornberg-Bauer, E. Cited in: 1 Publication (2019) Related Software: – Main Fields: –
RNAcode Software Authors: Washietl S, Findeiss S, Müller SA, Kalkhof S, von Bergen M, Hofacker IL, Stadler PF, Goldman N Cited in: 1 Publication (2015) Related Software: PhyloCSF; Matlab Main Fields: –
TRAJELIX Software Authors: Mihaly Mezei, Marta Filizola Cited in: 1 Publication (2011) Related Software: Qmd-plot; Eucb; NAMD Main Fields: –
WideDTA Software Authors: Hakime Öztürk, Elif Ozkirimli, Arzucan Özgür Cited in: 1 Publication (2022) Related Software: DeepPurpose; DeepDTA Main Fields: –
AMPA Software Authors: Torrent, M.; Di Tommaso, P.; Pulido, D.; Nogues, M.V.; Notredame, C.; Boix, E.; Andreu, D. Cited in: 0 Publications Related Software: – Main Fields: –
DFLpred Software Authors: Meng F, Kurgan L Cited in: 0 Publications Related Software: – Main Fields: –
LTRdigest Software Authors: S. Steinbiss, U. Willhoeft, G. Gremme, S. Kurtz Cited in: 0 Publications Related Software: – Main Fields: –
UniCon3D Software Authors: Debswapna Bhattacharya; Renzhi Cao; Jianlin Cheng Cited in: 0 Publications Related Software: – Main Fields: –