UniProt Software Authors: The UniProt Consortium; Apweiler, R.; Bairoch, A.; Wu, C. H.; Barker, W. C.; Boeckmann, B.; Ferro, S.; Gasteiger, E.; Huang, H.; Lopez, R.; Magrane, M.; Martin, M. J.; Natale, D. A.; O’donovan, C.; Redaschi, N.; Yeh, L. S. Cited in: 73 Publications (2004–2022) Related Software: BLAST; PSI-BLAST; KEGG; Pfam; Cd-hit; ClustalW; … Main Fields: Combinatorics (05-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)
DEseq Software Authors: Simon Anders Cited in: 57 Publications (2011–2022) Related Software: Bioconductor; edgeR; R; BaySeq; DESeq2; QuasiSeq; … Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)
edgeR Software Authors: Mark D. Robinson; Davis J. McCarthy; Gordon K. Smyth Cited in: 48 Publications (2011–2021) Related Software: Bioconductor; R; DEseq; Voom; BaySeq; TopHat; … Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)
BioProspector Software Authors: Liu, X., Brutlag, D., Liu, J. Cited in: 21 Publications (2002–2013) Related Software: TRANSFAC; JASPAR; WebLogo; CisModule; PhyME; TEIRESIAS; … Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)
DESeq2 Software Authors: Michael Love, Constantin Ahlmann-Eltze, Kwame Forbes, Simon Anders, Wolfgang Huber Cited in: 26 Publications (2015–2022) Related Software: Bioconductor; edgeR; R; DEseq; Voom; BaySeq; … Main Fields: Combinatorics (05-XX); Statistics (62-XX); Numerical analysis (65-XX)
Samtools Software Authors: Li H., Handsaker B., Wysoker A., Fennell T., Ruan J., Homer N., Marth G., Abecasis G., Durbin R Cited in: 16 Publications (2012–2019) Related Software: BWA; Soap; GATK; R; VarScan; BLAT; … Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Computer science (68-XX)
BaySeq Software Authors: Thomas J Hardcastle; Krystyna A Kelly Cited in: 16 Publications (2013–2018) Related Software: Bioconductor; edgeR; DEseq; R; DESeq2; Voom; … Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)
GATK Software Authors: A. McKenna, M. Hanna, E. Banks et al. Cited in: 16 Publications (2012–2021) Related Software: Samtools; Trimmomatic; R; BWA; STAR; Bowtie 2; … Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)
MEGAN Software Authors: Daniel H. Huson, Alexander F. Auch, Ji Qi, Stephan C. Schuster Cited in: 5 Publications (2010–2017) Related Software: TETRA; TACOA; BLAST; ONE; RAST; PSI-BLAST; … Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)
SPAdes Software Authors: Anton Bankevich, Sergey Nurk, Dmitry Antipov, Alexey A. Gurevich, Mikhail Dvorkin, Alexander S. Kulikov, Valery M. Lesin, Sergey I. Nikolenko, Son Pham, Andrey D. Prjibelski, Alexey V. Pyshkin, Alexander V. Sirotkin, Nikolay Vyahhi, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner Cited in: 17 Publications (2015–2022) Related Software: Velvet; IDBA-UD; IDBA; ABySS; GAGE; MEGAHIT; … Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)
STAR Software Authors: Alexander Dobin, Carrie A. Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R. Gingeras Cited in: 13 Publications (2015–2021) Related Software: R; TopHat; edgeR; Bioconductor; Soap; FastQC; … Main Fields: Combinatorics (05-XX); Statistics (62-XX); Numerical analysis (65-XX)
ABySS Software Authors: Simpson, J.T., Wong, K., Jackman, S.D., Schein, J.E., Jones, S.J., Birol, I. Cited in: 12 Publications (2012–2021) Related Software: Velvet; SPAdes; SOAPdenovo; IDBA-UD; GAGE; ALLPATHS; … Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)
iOri-Human Software Authors: Zhang, C.J.; Tang, H.; Li, W.C. Cited in: 13 Publications (2017–2022) Related Software: iRNA-AI; pSuc-Lys; pLoc-mEuk; pLoc-mPlant; iPromoter-2L; iRSpot-EL; … Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
BSmooth Software Authors: Hansen, K., B. Langmead, R. Irizarry Cited in: 12 Publications (2016–2022) Related Software: Bioconductor; MethylSig; Minfi; HMM-Fisher; HMM-DM; methylKit; … Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)
BEDTools Software Authors: Quinlan AR, Hall IM Cited in: 7 Publications (2012–2019) Related Software: R; Soap; IGV; FastQC; Samtools; edgeR; … Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Computer science (68-XX)
DEGseq Software Authors: Likun Wang; Zhixing Feng; Xi Wang; Xiaowo Wang; Xuegong Zhang Cited in: 9 Publications (2012–2018) Related Software: edgeR; Bioconductor; DEseq; R; BaySeq; Voom; … Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)
PoiClaClu Software Authors: Daniela Witten Cited in: 10 Publications (2011–2022) Related Software: R; penalizedLDA; rda; ElemStatLearn; edgeR; Bioconductor; … Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)
Salmon Software Authors: Rob Patro, Geet Duggal, Michael I Love, Rafael A Irizarry, Carl Kingsford Cited in: 9 Publications (2017–2022) Related Software: HISAT; RSEM; edgeR; TopHat; StringTie; RNASeqReadSimulator; … Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)
Segmentor3IsBack Software Authors: Alice Cleynen, Michel Koskas, Emilie Lebarbier, Guillem Rigaill, Stephane Robin Cited in: 5 Publications (2017–2021) Related Software: changepoint; wbs; R; FDRSeg; stepR; not; … Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX)
FastQC Software Authors: Simon Andrews Cited in: 7 Publications (2015–2021) Related Software: R; TopHat; Trimmomatic; Bioconductor; STAR; KEGG; … Main Fields: General and overarching topics; collections (00-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)
GenBank Software Authors: Dennis A. Benson; Mark Cavanaugh; Karen Clark; Ilene Karsch-Mizrachi; David J. Lipman; James Ostell; Eric W. Sayers Cited in: 5 Publications (2015–2020) Related Software: LAGAN; MEGA; Surge; Staticman; Nix; Jekyll; … Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)
HTSeq Software Authors: Simon Anders, Paul Theodor Pyl, Wolfgang Huber Cited in: 7 Publications (2016–2018) Related Software: Bioconductor; edgeR; TopHat; STAR; R; DEseq; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
MAST Software Authors: Finak, G., McDavid, A., Yajima, M., Deng, J., Gersuk, V., Shalek, A. K., Slichter, C. K., Miller, H. W., McElrath, M. J., Prlic, M., Linsley, P. S., Gottardo, R. Cited in: 8 Publications (2018–2021) Related Software: ZIFA; CIDR; DEseq; DESeq2; KEGG; SC3; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
Minfi Software Authors: Aryee MJ, Jaffe AE, Corrada-Bravo H, Ladd-Acosta C, Feinberg AP, Hansen KD, Irizarry RA Cited in: 8 Publications (2016–2022) Related Software: Bioconductor; BSmooth; MethylSig; IMA; limma; R; … Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)
Minimap2 Software Authors: Li H Cited in: 6 Publications (2019–2022) Related Software: Winnowing; metaFlye; AMBER; Centrifuge; MaxBin; MetaBAT; … Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)
Phyloseq Software Authors: Paul J. McMurdie; Susan Holmes Cited in: 5 Publications (2015–2021) Related Software: R; ggplot2; GUniFrac; shiny; vegan; multtest; … Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)
RAST Software Authors: Meyer F, Paarmann D, D’Souza M et al Cited in: 4 Publications (2012–2019) Related Software: KEGG; MEGAN; Artemis; BLAST; PROSITE; PSI-BLAST; … Main Fields: General and overarching topics; collections (00-XX); Probability theory and stochastic processes (60-XX); Computer science (68-XX)
SHARCGS Software Authors: Dohm, J. C., Lottaz, C., Borodina, T. Cited in: 2 Publications (2012–2017) Related Software: Velvet; ALLPATHS; SSAKE; ARACHNE; BLAT; QSRA; … Main Fields: General and overarching topics; collections (00-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
SOPRA Software Authors: A. Dayarian, T.P. Michael, A.M. Sengupta Cited in: 7 Publications (2015–2021) Related Software: GRASS; SCARPA; Bambus 2; BESST; Samtools; ScaffMatch; … Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)
VarScan Software Authors: Koboldt DC, Zhang Q, Larson DE, Shen D, McLellan MD, Lin L, Miller CA, Mardis ER, Ding L, Wilson RK Cited in: 7 Publications (2012–2019) Related Software: Samtools; Trimmomatic; GATK; SNVMix; edgeR; mrsFAST; … Main Fields: General and overarching topics; collections (00-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
BS Seeker Software Authors: Chen, P. Y., S. J. Cokus, M. Pellegrini Cited in: 6 Publications (2012–2022) Related Software: BSMAP; Bismark; BSmooth; Bowtie 2; SHRiMP; MethylCoder; … Main Fields: General and overarching topics; collections (00-XX); Probability theory and stochastic processes (60-XX); Computer science (68-XX)
FindPeaks Software Authors: Fejes AP, Robertson G, Bilenky M, et al. Cited in: 3 Publications (2012–2013) Related Software: BayesPeak; KEGG; DEGseq; edgeR; R; TileMap; … Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)
IDBA-UD Software Authors: Y. Peng, H.C. Leung, S.M. Yiu, F.Y. Chin Cited in: 7 Publications (2015–2022) Related Software: SPAdes; MEGAHIT; ABySS; SOAPdenovo; Velvet; IDBA; … Main Fields: Combinatorics (05-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
MaCH Software Authors: Li, Y., Willer, C. J., Ding, J., Scheet, P., Abecasis, G. R Cited in: 7 Publications (2013–2020) Related Software: PLINK; R; pi-MASS; Matrix eQTL; MASS; MTAR; … Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Computer science (68-XX)
MultiCluster Software Authors: Wang, Miaoyan; Fischer, Jonathan; Song, Yun S. Cited in: 7 Publications (2019–2022) Related Software: CORALS; JIVE; MultiwayRegression; tensorregress; SupCP; TensorReg; … Main Fields: Combinatorics (05-XX); Linear and multilinear algebra; matrix theory (15-XX); Statistics (62-XX)
PhyloWGS Software Authors: Deshwar, A. G., Vembu, S., Yung, C. K., Jang, G. H., Stein, L., Morris, Q. Cited in: 7 Publications (2018–2021) Related Software: PyClone; SciClone; TreeClone; R; PairClone; THetA; … Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Operations research, mathematical programming (90-XX)
ART Software Authors: Weichun Huang, Leping Li, Jason R. Myers, Gabor T. Marth Cited in: 6 Publications (2017–2022) Related Software: BWA; Bowtie 2; ABySS; Velvet; hybridSPAdes; Vargas; … Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)
BEAGLE Software Authors: Ayres, D.L., Darling, A., Zwickl, D.J., Beerli, P., Holder, M.T., Lewis, P.O., Huelsenbeck, J.P., Ronquist, F., Swofford, D.L., Cummings, M.P., Rambaut, A., Suchard, M.A. Cited in: 4 Publications (2014–2022) Related Software: R; BEAST; MrBayes; BEAUti; ape; Rcpp; … Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)
CloudBurst Software Authors: Michael C. Schatz Cited in: 2 Publications (2013–2018) Related Software: Soap; MrsRF; MapReduce; BWA; ZOOM; Crossbow; … Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)
GOLD Software Authors: Reddy TBK, Thomas A, Stamatis D, Bertsch J, Isbandi M, Jansson J, Mallajosyula J, Pagani I, Lobos E, Kyrpides N Cited in: 4 Publications (2011–2017) Related Software: miRBase; KEGG; MPRAP; BLAST; PSI-BLAST; PONDR-FIT; … Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Statistical mechanics, structure of matter (82-XX)
KMC Software Authors: Deorowicz, S., Kokot, M., Grabowski, S., Debudaj, A Cited in: 6 Publications (2016–2022) Related Software: Velvet; GitHub; Turtle; Gerbil; Winnowing; Minimap2; … Main Fields: Combinatorics (05-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
mothur Software Authors: Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF. Cited in: 4 Publications (2013–2021) Related Software: pplacer; rtk; iNEXT; vegan; EstimateS; CURSAT; … Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)
SeqMap Software Authors: Jiang H, Wong WH Cited in: 3 Publications (2011–2015) Related Software: ClustalW; DIALIGN; ViennaRNA; RAST; TopHat; SHRiMP; … Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)
ShortRead Software Authors: Martin Morgan, Simon Anders, Michael Lawrence, Patrick Aboyoun, Hervé Pagès, Robert Gentleman Cited in: 2 Publications (2015–2021) Related Software: Bioconductor; R; ggplot2; Rsamtools; TopHat; Trimmomatic; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
ShrinkBayes Software Authors: van de Wiel, M. A., Neerincx, M., Buffart, T. E., Sie, D., Verheul, H. M Cited in: 6 Publications (2015–2021) Related Software: Bioconductor; edgeR; BaySeq; DESeq2; Voom; R; … Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)
sva Software Authors: Leek JT, Johnson WE, Parker HS, et al. Cited in: 5 Publications (2016–2021) Related Software: R; CRAN; systemPipeR; JASPAR; KEGG; Bioconductor; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
TopKLists Software Authors: Michael G. Schimek, Eva Budinska, Jie Ding, Karl G. Kugler, Vendula Svendova, Shili Lin Cited in: 6 Publications (2015–2020) Related Software: R; sets; relations; Rankcluster; Label.switching; PerMallows; … Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
Bismark Software Authors: Krueger, F.; S. Andrews Cited in: 4 Publications (2016–2021) Related Software: Bowtie 2; BSMAP; BS Seeker; STAR; methylKit; Trimmomatic; … Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Computer science (68-XX)
casper Software Authors: Rossell, David; Attolini, Camille Stephan-Otto; Kroiss, Manuel; St"ocker, Almond Cited in: 5 Publications (2014–2018) Related Software: RSEM; TopHat; EBSeq; edgeR; Bioconductor; DRIMSeq; … Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)
d2_cluster Software Authors: Burke, J., Davison, D., Hide, W. Cited in: 5 Publications (2007–2019) Related Software: MOLPHY; PHYLIP; Rainbow; SlideSort; Mash; Corset; … Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Computer science (68-XX)
EDAseq Software Authors: Davide Risso; Sandrine Dudoit Cited in: 5 Publications (2014–2018) Related Software: DEseq; BaySeq; edgeR; Bioconductor; R; EXPANDER; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
F-Seq Software Authors: – Cited in: 3 Publications (2011–2016) Related Software: KEGG; Galaxy; ROAST; featureCounts; Rsubread; recount; … Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)
GRASS Software Authors: A.A. Gritsenko, J.F. Nijkamp, M.J.T. Reinders, D. de Ridder Cited in: 5 Publications (2015–2021) Related Software: SCARPA; SOPRA; Bambus 2; BESST; ScaffMatch; Velvet; … Main Fields: Combinatorics (05-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)
IMP Software Authors: Peisen Zhang, Xiaolu Ye, Li Liao, James J. Russo, Stuart G. Fischer Cited in: 5 Publications (2004–2020) Related Software: – Main Fields: Combinatorics (05-XX); Computer science (68-XX)
methylKit Software Authors: Akalin, A., M. Kormaksson, S. Li, F. Garrett-Bakelman, M. Figueroa, A. Melnick, C. Mason Cited in: 5 Publications (2016–2021) Related Software: HMM-Fisher; HMM-DM; BSmooth; Bioconductor; MethylSig; MOABS; … Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)
MethylSig Software Authors: Park, Y., M. E. Figueroa, L. S. Rozek, M. A. Sartor Cited in: 5 Publications (2016–2022) Related Software: BSmooth; Minfi; Bioconductor; HMM-Fisher; MOABS; HMM-DM; … Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)
Mugsy Software Authors: Samuel V. Angiuoli, Steven L. Salzberg Cited in: 4 Publications (2013–2022) Related Software: MUSCLE; HMMER; Mauve; iGTP; MrBayes; ProtTest 3; … Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)
ScaffMatch Software Authors: Mandric, I.; Zelikovsky, A. Cited in: 4 Publications (2016–2021) Related Software: BESST; GRASS; Bambus 2; Velvet; SCARPA; SOPRA; … Main Fields: Combinatorics (05-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)
slingshot Software Authors: Kelly Street, Davide Risso, Diya Das, Sandrine Dudoit, Koen Van den Berge, Robrecht Cannoodt Cited in: 5 Publications (2008–2021) Related Software: zinbwave; PMA; DESeq2; UMAP; ZIFA; Pyglrm; … Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)
svaseq Software Authors: Jeffrey T. Leek Cited in: 5 Publications (2015–2021) Related Software: Bioconductor; R; DESeq2; DEseq; LBFGS-B; L-BFGS; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
Trimmomatic Software Authors: Anthony M. Bolger, Marc Lohse, Bjoern Usadel Cited in: 4 Publications (2017–2021) Related Software: FastQC; GATK; TopHat; R; VarScan; Samtools; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
ANNOVAR Software Authors: Wang K, Li M, Hakonarson H Cited in: 3 Publications (2014–2020) Related Software: R; MEME; KEGG; WEKA; GenABEL; lme4; … Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Computer science (68-XX)
BFAST Software Authors: Homer, N., Merriman, B., Nelson, S.F. Cited in: 3 Publications (2010–2017) Related Software: SHRiMP; PatternHunter; BWA; Soap; ART; GASSST; … Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)
GenomeGraphs Software Authors: Durinck S, Bullard J. Cited in: 1 Publication (2016) Related Software: Bioconductor; R; Rtracklayer; edgeR; Galaxy; ROAST; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
GenomicRanges Software Authors: P. Aboyoun, H. Pagès, M. Lawrence Cited in: 2 Publications (2014–2021) Related Software: Bioconductor; R; ggplot2; GenomicAlignments; ASReml; IRanges; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
GString Software Authors: H. Jiang, H. Wang, P.S. Yu, S. Zhou Cited in: 3 Publications (2011–2016) Related Software: Fg-index; GraphGrep; TALE; NeMa; GADDI; SAPPER; … Main Fields: Computer science (68-XX); Operations research, mathematical programming (90-XX)
HMM-DM Software Authors: Yu, Xiaoqing; Sun, Shuying Cited in: 4 Publications (2016–2019) Related Software: HMM-Fisher; BSmooth; methylKit; MethylSig; MOABS; Bisulfighter; … Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)
HMM-Fisher Software Authors: Sun, S., Yu, X. Cited in: 4 Publications (2016–2019) Related Software: HMM-DM; BSmooth; methylKit; MethylSig; MOABS; Bisulfighter; … Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)
HPeak Software Authors: Qin ZS, Yu J, Shen J, et al. Cited in: 4 Publications (2012–2016) Related Software: BayesPeak; CLIPZ; COUNT; ARACHNE; SpliceTrap; DWE; … Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)
MetaSim Software Authors: Richter, D.C.; Ott, F.; Auch, A.F.; Schmid, R.; Huson, D.H. Cited in: 2 Publications (2017–2018) Related Software: ONE; BLAST; PSI-BLAST; MEGAN; Pfam; MetaCluster; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
miRTarBase Software Authors: Chou CH, Chang NW, Shrestha S, Hsu SD, Lin YL, Lee WH, Yang CD, Hong HC, Wei TY, Tu SJ, Tsai TR, Ho SY, Jian TY, Wu HY, Chen PR, Lin NC, Huang HT, Yang TL, Pai CY, Tai CS, Chen WL, Huang CY, Liu CC, Weng SL, Liao KW, Hsu WL, Huang HD Cited in: 3 Publications (2013–2018) Related Software: HIPPIE; STRING; DAVID; Algorithm 862; SylArray; Sylamer; … Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Statistics (62-XX); Operations research, mathematical programming (90-XX)
MOABS Software Authors: Sun, D., Y. Xi, B. Rodriguez, H. J. Park, P. Tong, M. Meong, M. A. Goodell, W. Li Cited in: 4 Publications (2016) Related Software: Bioconductor; MethylSig; HMM-Fisher; HMM-DM; Bisulfighter; BSmooth; … Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)
PerM Software Authors: Y. Chen, T. Souaiaia, T. Chen Cited in: 2 Publications (2010–2014) Related Software: ZOOM; PatternHunter; SHRiMP; BWA; PASS; Iedera; … Main Fields: Combinatorics (05-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
ReadDepth Software Authors: Miller, CA, et al. Cited in: 4 Publications (2015–2018) Related Software: CNV-seq; R; ExomeWalker; BCFtools; HTQC; SNVer; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
SHREC Software Authors: Schroder, J., Schroder, H., Puglisi, S.J., Sinha, R., Schmidt, B. Cited in: 3 Publications (2011–2018) Related Software: Reptile; HiTEC; Quake; ALLPATHS; BWA; Fiona; … Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)
SimSeq Software Authors: Samuel Benidt Cited in: 3 Publications (2015–2019) Related Software: R; edgeR; DEseq; Bioconductor; VCNet; ARACNE; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
Snakemake Software Authors: Köster, Johannes; Rahmann, Sven Cited in: 0 Publications Related Software: Taverna; Python; ImgLib2; scikit-image; CLIJ; CellProfiler; … Main Fields: –
SNVMix Software Authors: Goya, R. et al. Cited in: 3 Publications (2012–2018) Related Software: VarScan; RSEM; STAR; edgeR; Sniper; GlfMultiples; … Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)
THetA Software Authors: Oesper, L., Mahmoody, A., Raphael, B. J. Cited in: 4 Publications (2015–2020) Related Software: PyClone; R; PhyloWGS; BayCount; PairClone; TreeClone; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
Bambus 2 Software Authors: Koren, S., Treangen, T.J., Pop, M. Cited in: 3 Publications (2016–2021) Related Software: GRASS; SCARPA; SOPRA; BESST; ScaffMatch; Velvet; … Main Fields: Combinatorics (05-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)
BamTools Software Authors: Barnett D. W., Garrison E. K., Quinlan A. R., Stromberg M. P., Marth G. T. Cited in: 1 Publication (2019) Related Software: BioClojure; BioRuby; LEVIATHAN; Samtools; LRez Main Fields: Biology and other natural sciences (92-XX)
BayCount Software Authors: Xie, Fangzheng; Zhou, Mingyuan; Xu, Yanxun Cited in: 3 Publications (2018–2021) Related Software: R; PyClone; THetA; PhyloWGS; PairClone; TreeClone; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
BEAT Software Authors: Akman, K., T. Haaf, S. Gravina, J. Vijg, A. Tresch Cited in: 3 Publications (2016–2017) Related Software: BSmooth; MethylSig; methyAnalysis; HMM-Fisher; IMA; MOABS; … Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)
Bisulfighter Software Authors: Saito, Y., J. Tsuji, T. Mituyama Cited in: 3 Publications (2016) Related Software: MethylSig; HMM-Fisher; MOABS; HMM-DM; BSmooth; methylKit; … Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)
Canu Software Authors: Sergey Koren, Brian P Walenz, Konstantin Berlin, Jason R Miller, Nicholas H Bergman, Adam M Phillippy Cited in: 3 Publications (2017–2019) Related Software: SPAdes; CAMSA; hybridSPAdes; GTED; HINGE; Bandage; … Main Fields: Biology and other natural sciences (92-XX)
CLIPZ Software Authors: Khorshid M, Rodak C, Zavolan M. Cited in: 2 Publications (2012–2014) Related Software: HPeak; ARACHNE; SpliceTrap; DWE; mirTools; miRExpress; … Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)
csaw Software Authors: Lun, A. T. L., Smyth, G. K. Cited in: 3 Publications (2016–2018) Related Software: limma; Bioconductor; diffHic; Voom; edgeR; DMRScan; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
deBGA Software Authors: B. Liu, H. Guo, M. Brudno, Y. Wang Cited in: 3 Publications (2017–2022) Related Software: IDBA; DARRC; BlastGraph; MEGAHIT; Velvet; IDBA-Tran; … Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)
Delly Software Authors: T. Rausch, T. Zichner, A. Schlattl, A. M. Stutz, V. Benes, J. O. Korbel Cited in: 2 Publications (2016–2017) Related Software: Pindel; LUMPY; wgsim; Samtools; YAHA; GitHub; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
HiTEC Software Authors: Ilie, L., Fazayeli, F., Ilie, S. Cited in: 2 Publications (2011–2017) Related Software: SHREC; Reptile; Quake; ALLPATHS; BWA; Fiona; … Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)
IGV Software Authors: Thorvaldsdóttir H, Robinson JT, Mesirov JP Cited in: 3 Publications (2016–2018) Related Software: BEDTools; R; FastQC; Samtools; FIMO; BioMart; … Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)
IsoLasso Software Authors: Wei Li, Jianxing Feng, Tao Jiang Cited in: 2 Publications (2019–2022) Related Software: HISAT; Salmon; Gurobi; MultiTrans; Scallop2; ShoRAH; … Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)
miRExpress Software Authors: Wang, W.C., Lin, F.M., Chang, W.C., Lin, K.Y., Huang, H.D., Lin, N.S. Cited in: 2 Publications (2011–2012) Related Software: ARACHNE; SpliceTrap; DWE; CLIPZ; mirTools; TargetSpy; … Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)
Oases Software Authors: Marcel H. Schulz, Daniel R. Zerbino, Martin Vingron, Ewan Birney Cited in: 3 Publications (2015–2017) Related Software: SOAPdenovo; MetAMOS; Fiona; SPAdes; BLAT; Quake; … Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Computer science (68-XX)
PairClone Software Authors: Zhou, T., Müller, P., Sengupta, S., Ji, Y. Cited in: 2 Publications (2019–2020) Related Software: PyClone; TreeClone; PhyloWGS; THetA; BayCount; GitHub; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
PCAP Software Authors: Huang, X., Wang, J., Aluru, S., Yang, S.P., Hillier, L. Cited in: 3 Publications (2007–2017) Related Software: ClustalW; PHYLIP; JBROWSE; InterProScan; MAKER; EasyGene; … Main Fields: General and overarching topics; collections (00-XX); Probability theory and stochastic processes (60-XX); Operations research, mathematical programming (90-XX)
PICS Software Authors: Zhang, Xuekui; Robertson, Gordon; Krzywinski, Martin; Ning, Kaida; Droit, Arnaud; Jones, Steven; Gottardo, Raphael Cited in: 3 Publications (2011–2015) Related Software: nucleoSim; PuFFIN; nucleR; consensusSeekeR; VennDiagram; FindPeaks; … Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)
Prokka Software Authors: Torsten Seemann Cited in: 1 Publication (2016) Related Software: HMMER; MAFFT; eggNOG; R; Gubbins; SeqKit; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
PurityEst Software Authors: Su, X., Zhang, L., Zhang, J., Meric-Bernstam, F. and Weinstein, J. N. Cited in: 3 Publications (2015–2021) Related Software: BWA; PyClone; PurBayes; TreeClone; SciClone; PhyloWGS; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
RAPSearch2 Software Authors: Zhao Y, Tang H, Ye Y Cited in: 2 Publications (2017–2019) Related Software: PHYLIP; Tracer; MulRF; iGTP; TOPAL; ExaBayes; … Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)