×

Found 471 Software Packages (Results 1–100)

WordNet

Software Authors:   Princeton University; George A. Miller; Christiane Fellbaum
Referenced in: 216 Publications (1996–2022)
Related Software: word2vec; ConceptNet; YAGO; BabelNet; LIBSVM; Freebase; …
Main Fields: Mathematical logic and foundations (03-XX); Combinatorics (05-XX); Statistics (62-XX)

NewtonLib

Software Authors:   Deuflhard, Peter; Lutz Weimann
Referenced in: 308 Publications (2001–2022)
Related Software: Matlab; RODAS; PETSc; KELLEY; Ipopt; minpack; …
Main Fields: Partial differential equations (35-XX); Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX)

BLAST

Software Authors:   Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, David J. Lipman
Referenced in: 150 Publications (1999–2022)
Related Software: PSI-BLAST; Pfam; UniProt; ClustalW; MUSCLE; LIBSVM; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

MADM

Software Authors:   Rao, R. Venkata
Referenced in: 127 Publications (1998–2022)
Related Software: ELECTRE; VIKOR; NBI; FLINTSTONES; SimLean; Mathematica; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

SIMPLIcity

Software Authors:   Wang, J.Z., Li, J., Wiederhold, G.
Referenced in: 44 Publications (2002–2021)
Related Software: VisualSEEk; NeTra; EMD; LIBSVM; SIFT; PASCAL VOC; …
Main Fields: General topology (54-XX); Statistics (62-XX); Computer science (68-XX)

ROCK

Software Authors:   Guha, S.; Rastogi, R.; Shim, K.
Referenced in: 40 Publications (2002–2021)
Related Software: clusfind; UCI-ml; COOLCAT; LOF; ElemStatLearn; COSA; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

SimRank

Software Authors:   Jeh G, Widom J
Referenced in: 35 Publications (2008–2022)
Related Software: node2vec; LCE; DeepWalk; clusfind; UCI-ml; Matlab; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Numerical analysis (65-XX)

MUMMER

Software Authors:   S. Kurtz, A. Phillippy, A.L. Delcher, M. Smoot, M. Shumway, C. Antonescu, S.L. Salzberg
Referenced in: 29 Publications (2003–2022)
Related Software: LAGAN; REPuter; BLASTZ; PatternHunter; AVID; DIALIGN; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Computer science (68-XX)

FSIM

Software Authors:   Zhang, L., Mou, X., Zhang, D.
Referenced in: 38 Publications (2011–2022)
Related Software: TID2013; DnCNN; BM3D; PyTorch; MatConvNet; tproduct; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

SimEstFBM

Software Authors:   Jean-Francois Coeurjolly
Referenced in: 39 Publications (2001–2022)
Related Software: longmemo; wmtsa; R; Matlab; S-PLUS; DLMF; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

QBIC

Software Authors:   W. Niblack, R. Barber, W. Equitz, M. Flickner, E. Glasman, D. Petkovic, P. Yanker, C. Faloutsos, G. Taubin
Referenced in: 24 Publications (1997–2018)
Related Software: VisualSEEk; Chabot; SIMPLIcity; NeTra; PicHunter; PicToSeek; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Information and communication theory, circuits (94-XX)

FaceNet

Software Authors:   Florian Schroff, Dmitry Kalenichenko, James Philbin
Referenced in: 28 Publications (2017–2022)
Related Software: LFW; ImageNet; DeepFace; AlexNet; GitHub; LIBSVM; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Computer science (68-XX)

LASS

Software Authors:   Stilian A. Stoev
Referenced in: 29 Publications (1997–2021)
Related Software: longmemo; wmtsa; Matlab; NESToolbox; fArma; nlt; …
Main Fields: History and biography (01-XX); Harmonic analysis on Euclidean spaces (42-XX); Probability theory and stochastic processes (60-XX)

CRYPTIM

Software Authors:   Ustimenko, Vasyl
Referenced in: 29 Publications (2001–2015)
Related Software: CRYPTALL; Galois Field Arithmetic Library
Main Fields: Combinatorics (05-XX); Algebraic geometry (14-XX); Computer science (68-XX)

FASTA

Software Authors:   William R. Pearson
Referenced in: 17 Publications (1992–2022)
Related Software: BLAST; PSI-BLAST; ClustalW; T-coffee; CLUSTAL; SMART; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Computer science (68-XX)

MaSh

Software Authors:   Daniel Kühlwein; Jasmin Christian Blanchette; Cezary Kaliszyk; Josef Urban
Referenced in: 25 Publications (2001–2021)
Related Software: Flyspeck; E Theorem Prover; VAMPIRE; MaLARea; Sledgehammer; HOL Light; …
Main Fields: Mathematical logic and foundations (03-XX); Numerical analysis (65-XX); Computer science (68-XX)

WebLogo

Software Authors:   G.E. Crooks, G. Hon, J.-M. Chandonia, S.E. Brenner
Referenced in: 13 Publications (2004–2021)
Related Software: TRANSFAC; BioProspector; R; RegulonDB; LIBSVM; JASPAR; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

AFP-Pred

Software Authors:   Kandaswamy, K. K.; Martinetz, T.; Moller, S.; Suganthan, P. N.; Sridharan, S.; Pugalenthi, G.
Referenced in: 23 Publications (2011–2019)
Related Software: Cell-PLoc; iLoc-Euk; iRSpot-TNCPseAAC; iDNA-Prot; iSNO-PseAAC; iPPI-Esml; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

AFGen

Software Authors:   Nikil Wale and George Karypis.
Referenced in: 19 Publications (2009–2022)
Related Software: gSpan; node2vec; Graclus; DeepWalk; PyTorch; BRENDA; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Numerical analysis (65-XX)

2D-MH

Software Authors:   Wu ZC, Xiao X, Chou KC.
Referenced in: 21 Publications (2010–2019)
Related Software: FoldRate; GPCR-CA; Wenxiang; BLAST; PSI-BLAST; iRNA-PseU; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

HPStream

Software Authors:   Aggarwal C, Han J, Wang J, Yu P
Referenced in: 7 Publications (2007–2017)
Related Software: UCI-ml; clusfind; LCM; GraphScope; ROCK; TelegraphCQ; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

RAPTOR

Software Authors:   Xu, J.; Li, M.; Lin, G.; Kim, D.; Xu, Y.
Referenced in: 15 Publications (2002–2021)
Related Software: GenThreader; CPLEX; BLAST; PSI-BLAST; FUGUE; GreedyBB; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

HMMER

Software Authors:   Robert D. Finn, Jody Clements, Sean R. Eddy
Referenced in: 12 Publications (2006–2019)
Related Software: ClustalW; UniProt; MUSCLE; MAFFT; R; MrBayes; …
Main Fields: General and overarching topics; collections (00-XX); Harmonic analysis on Euclidean spaces (42-XX); Statistics (62-XX)

CLUSTAL

Software Authors:   Higgins, D. G.; Sharp, P. M.
Referenced in: 14 Publications (1992–2017)
Related Software: ClustalW; MUSCLE; T-coffee; MAFFT; DIALIGN; Balibase; …
Main Fields: Probability theory and stochastic processes (60-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

gensim

Software Authors:   Radim Řehůřek
Referenced in: 17 Publications (2011–2021)
Related Software: GloVe; MALLET; word2vec; LIBSVM; svdpack; Python; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Computer science (68-XX)

bmds

Software Authors:   Oh, Man-Suk; Raftery, Adrian E.
Referenced in: 17 Publications (2001–2022)
Related Software: R; BayesDA; Stan; MassiveMDS; RStan; NUTS; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

TagProp

Software Authors:   Guillaumin, M., Mensink, T., Verbeek, J., & Schmid, C.
Referenced in: 13 Publications (2010–2018)
Related Software: ImageNet; NUS-WIDE; SIFT; PASCAL VOC; Pegasos; C4.5; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

TwitterRank

Software Authors:   Weng, J., Lim, E. P., Jiang, J., He, Q.
Referenced in: 13 Publications (2011–2021)
Related Software: SIMPATH; JGibbLDA; GATE; Stanford Tagger; CLUTO; jLDADMM; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

P-FCM

Software Authors:   Loia, V.; Pedrycz, W.; Senatore, S.
Referenced in: 9 Publications (2003–2015)
Related Software: CMU PIE; ElemStatLearn; BoostCluster; CECM; ReliefF; WEKA; …
Main Fields: Statistics (62-XX); Computer science (68-XX)

EigenRank

Software Authors:   Liu, N.; Yang, Q.
Referenced in: 7 Publications (2012–2018)
Related Software: CLiMF; PathRank; WSRank; VSRank; SibRank; CARES; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

FALCONN

Software Authors:   Ilya Razenshteyn; Ludwig Schmidt
Referenced in: 15 Publications (2017–2021)
Related Software: GitHub; annoy; GloVe; LEMP; FLANN; PRMLT; …
Main Fields: Number theory (11-XX); Statistics (62-XX); Computer science (68-XX)

SymNMF

Software Authors:   Kuang, Da; Yun, Sangwoon; Park, Haesun
Referenced in: 15 Publications (2015–2021)
Related Software: HierNMF2; SmallK; RCV1; GLAD; REV2; OddBall; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Statistics (62-XX); Numerical analysis (65-XX)

TM-align

Software Authors:   Zhang, Y., Skolnick, J.
Referenced in: 9 Publications (2009–2021)
Related Software: BLAST; PSI-BLAST; ClustalW; MAMMOTH; SSAP; Gephi; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

DRAGON

Software Authors:   Mauri, Andrea; Consonni, Viviana; Pavan, Manuela; Todeschini, Roberto; Kode srl; Talete SRL
Referenced in: 12 Publications (2006–2019)
Related Software: HyperChem; OCHEM; MOPAC; STATISTICA; PubChem PUG; KNIME; …
Main Fields: History and biography (01-XX); Combinatorics (05-XX); Statistics (62-XX)

ExPASy

Software Authors:   Gasteiger, E.; Gattiker, A.; Hoogland, C.; Ivanyi, I.; Appel, R. D.; Bairoch, A
Referenced in: 10 Publications (2006–2020)
Related Software: MODELLER; BLAST; PSI-BLAST; R; UniProt; PROCHECK; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

struc2vec

Software Authors:   Leonardo F. R. Ribeiro, Pedro H. P. Savarese, Daniel R. Figueiredo
Referenced in: 13 Publications (2020–2021)
Related Software: node2vec; DeepWalk; word2vec; PyTorch; GraRep; RolX; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

Swoogle

Software Authors:   Ding, L., Finin, T., Joshi, A., Pan, R., Cost, R.S., Peng, Y., Reddivari, P., Doshi, V.C., Sachs, J.
Referenced in: 2 Publications (2011)
Related Software: WordNet; SPARQL; DBpedia; Jena; LSCrawler; MnM; …
Main Fields: Computer science (68-XX)

GNUC

Software Authors:   Hofheinz, Dennis; Shoup, Victor
Referenced in: 13 Publications (2013–2022)
Related Software: MoSS; CryptHOL; TAMARIN; EasyCrypt; FairplayMP
Main Fields: Computer science (68-XX); Information and communication theory, circuits (94-XX)

OPPDIF

Software Authors:   Lutz, A.E.; Kee, R.J.; Grcar, J.F.; Rupley, F.M.
Referenced in: 13 Publications (2003–2021)
Related Software: CHEMKIN; PREMIX; TRANSPORT; GRI-Mech 3.0; FlameMaster; PETSc; …
Main Fields: Numerical analysis (65-XX); Fluid mechanics (76-XX); Classical thermodynamics, heat transfer (80-XX)

DESOLV

Software Authors:   Vu, K.T.; Butcher, J.; Carminati, J.
Referenced in: 12 Publications (2005–2021)
Related Software: SYMMGRP; Maple; DESOLVII; GeM; LIE; BIGLIE; …
Main Fields: Ordinary differential equations (34-XX); Partial differential equations (35-XX); Probability theory and stochastic processes (60-XX)

EstimateS

Software Authors:   Colwell, R.K.
Referenced in: 10 Publications (2002–2021)
Related Software: Rcapture; iNEXT; vegan; ws2m; SPADE; asymptor; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

QPath

Software Authors:   Tomer Shlomi, Daniel Segal, Eytan Ruppin, Roded Sharan
Referenced in: 9 Publications (2008–2020)
Related Software: QNet; MetaCyc; GraMoFoNe; KEGG; SIMBio; Kavosh; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

Gpos-PLoc

Software Authors:   Shen, H.B.; Chou, K.C.
Referenced in: 11 Publications (2007–2017)
Related Software: Virus-ploc; Hum-PLoc; Hum-mPLoc; Euk-PLoc; Euk-mPLoc; Gneg-mPLoc; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

MAMMOTH

Software Authors:   Ortiz, A.R.; Strauss, C.E.M.; Olmea, O.
Referenced in: 8 Publications (2008–2017)
Related Software: TM-align; BLAST; PSI-BLAST; DIAL; GenThreader; PHYLIP; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

metapath2vec

Software Authors:   Yuxiao Dong, Nitesh V Chawla, Ananthram Swami
Referenced in: 10 Publications (2018–2021)
Related Software: node2vec; DeepWalk; word2vec; GraRep; PTE; PyTorch; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

proxy

Software Authors:   David Meyer; Christian Buchta
Referenced in: 2 Publications (2013–2016)
Related Software: R; cluster (R); vegan; arules; tm; Matrix; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX)

shallot

Software Authors:   David B. Dahl; Ryan Day; Jerry W. Tsai
Referenced in: 9 Publications (2018–2022)
Related Software: R; bamboo; rscala; CRAN; MLlib; SparkR; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

WHIRL

Software Authors:   Cohen, W.W.
Referenced in: 11 Publications (2000–2015)
Related Software: C4.5; XPath; SSE; Figaro; PRISM; Dyna; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

Rdkit

Software Authors:   Landrum G.
Referenced in: 3 Publications (2018–2021)
Related Software: Python; MoleculeNet; ZINC; PyTorch; SciPy; kallisto; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

SA-cluster

Software Authors:   Cheng, Hong; Zhou, Yang; Huang, Xin; Yu, Jeffrey Xu
Referenced in: 10 Publications (2012–2022)
Related Software: Inc-cluster; SimRank; GenLouvain; CRIO; DAVID; AppliedPredictiveModeling; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

TED

Software Authors:   Pawlik, M.; Augsten, N.
Referenced in: 9 Publications (2015–2021)
Related Software: RTED; KEGG; graph2vec; ViennaRNA; ecceTERA; RNAforester; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

ClueGO

Software Authors:   Bindea G, Mlecnik B, Hackl H et al
Referenced in: 7 Publications (2014–2018)
Related Software: IntAct; STRING; KEGG; Cytoscape; BioGRID; Reactome; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Statistics (62-XX)

PathBLAST

Software Authors:   Kelley, B. P., Yuan, B., Lewitter, F., Sharan, R., Stockwell, B. R., Ideker T
Referenced in: 6 Publications (2011–2015)
Related Software: KEGG; BLAST; PSI-BLAST; ClustalW; MAVisto; FANMOD; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Computer science (68-XX)

PipMaker

Software Authors:   Scott Schwartz, Zheng Zhang, Kelly A. Frazer, Arian Smit, Cathy Riemer, John Bouck, Richard Gibbs, Ross Hardison, Webb Miller
Referenced in: 7 Publications (2003–2018)
Related Software: MUMMER; AVID; BLAT; DIALIGN; PatternHunter; RepeatMasker; …
Main Fields: Probability theory and stochastic processes (60-XX); Computer science (68-XX); Statistical mechanics, structure of matter (82-XX)

SABmark

Software Authors:   Walle, I.V., Lasters, I., Wyns, L.
Referenced in: 4 Publications (2013–2017)
Related Software: MUSCLE; ClustalW; OXBench; Kalign; ProbCons; Balibase; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

BERTScore

Software Authors:   Tianyi Zhang, Varsha Kishore, Felix Wu, Kilian Q. Weinberger, Yoav Artzi
Referenced in: 6 Publications (2021–2022)
Related Software: BERT; Rouge; XLNet; Tensor2Tensor; GloVe; RoBERTa; …
Main Fields: Mathematical logic and foundations (03-XX); Computer science (68-XX)

COSMOS

Software Authors:   Stefan Hougardy, Nicolas Rocca, Martin Thimm
Referenced in: 7 Publications (2006–2018)
Related Software: MARCH-INSIDE; Bio-AIMS; PHP; GPCR-CA; NL MIND-BEST; Quat-2L; …
Main Fields: Combinatorics (05-XX); Numerical analysis (65-XX); Computer science (68-XX)

DECKARD

Software Authors:   Lingxiao Jiang, Ghassan Misherghi, Zhendong Su, Stephane Glondu
Referenced in: 1 Publication (2009)
Related Software: CCFinder; CP-miner; Gplag; Dotplot; MISIM; StaQC; …
Main Fields: Computer science (68-XX)

GenBank

Software Authors:   Dennis A. Benson; Mark Cavanaugh; Karen Clark; Ilene Karsch-Mizrachi; David J. Lipman; James Ostell; Eric W. Sayers
Referenced in: 5 Publications (2015–2020)
Related Software: LAGAN; MEGA; Surge; Staticman; Nix; Jekyll; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

iSPARQL

Software Authors:   C. Kiefer; A. Bernstein; M. Stocker
Referenced in: 0 Publications
Related Software: SPARQL; SEQUEL; R2RML; RDF123; QueryVOWL; OptiqueVQS; …
Main Fields:

MotifCut

Software Authors:   Eugene Fratkin, Brian T. Naughton, Douglas L. Brutlag, Serafim Batzoglou
Referenced in: 7 Publications (2008–2021)
Related Software: SNAP; CIDANE; SageMath; NetworkX; MCODE; GAME; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

SBERT

Software Authors:   Nils Reimers, Iryna Gurevych
Referenced in: 6 Publications (2021–2022)
Related Software: word2vec; GloVe; BERT; BLEU; XLNet; RoBERTa; …
Main Fields: Computer science (68-XX)

ToppGene Suite

Software Authors:   Chen, J., E. E. Bardes, B. J. Aronow, A. G. Jegga
Referenced in: 6 Publications (2018–2021)
Related Software: glasso; DEseq; SILGGM; TestBMN; huge; GlobalMIT; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

BindingDB

Software Authors:   Liu T, Lin Y, Wen X, Jorrisen RN, Gilson MK
Referenced in: 4 Publications (2009–2018)
Related Software: ChEMBL; KEGG; ImageNet; TorchIO; TensorLy; ADA; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Computer science (68-XX)

CLIP

Software Authors:   Rhodes N, Willett P, Calvet A, Dunbar JB, Humblet C
Referenced in: 7 Publications (2006–2018)
Related Software: DIMACS; TRON; Biq Mac; SDPT3; Algorithm 457
Main Fields: Combinatorics (05-XX); Linear and multilinear algebra; matrix theory (15-XX); Numerical analysis (65-XX)

Dotplot

Software Authors:   Church, K., Helfman, I.
Referenced in: 4 Publications (2005–2017)
Related Software: CCFinder; CP-miner; DECKARD; Winnowing; UMLDiff; ArgoUML; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Dynamical systems and ergodic theory (37-XX); Statistics (62-XX)

FASTA3

Software Authors:   Pearson, W. R.
Referenced in: 3 Publications (2005–2017)
Related Software: BLAST; PSI-BLAST; T-coffee; ClustalW; Balibase; Pfam; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)

HHpred

Software Authors:   J. Söding, A. Biegert, A. Lupas
Referenced in: 3 Publications (2014–2018)
Related Software: Pfam; BioGRID; PSI-BLAST; ARACNE; KEGG; minet; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Computer science (68-XX)

NESToolbox

Software Authors:   Kira Rehfeld, Bedartha Goswami
Referenced in: 7 Publications (2014–2021)
Related Software: PearsonT; MEMSS; S-PLUS; BINCOR; nuSpectral; K2; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

Quicksilver

Software Authors:   Yang, X., Kwitt, R., Styner, M., Niethammer, M.
Referenced in: 7 Publications (2018–2021)
Related Software: VoxelMorph; Wasserstein GAN; U-Net; USAC; D2-Net; GMS; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

Selfis

Software Authors:   Karagiannis T.
Referenced in: 3 Publications (2006–2013)
Related Software: longmemo; SSE; Fractan; DiskSim; VTune
Main Fields: Computer science (68-XX); Operations research, mathematical programming (90-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

SFA

Software Authors:   Schäfer P, Högqvist M
Referenced in: 7 Publications (2015–2021)
Related Software: UCR Suite; catch22; rocket; TS-CHIEF; hctsa; AlexNet; …
Main Fields: Statistics (62-XX); Computer science (68-XX)

simPop

Software Authors:   Bernhard Meindl, Matthias Templ, Andreas Alfons, Alexander Kowarik, Mathieu Ribatet
Referenced in: 4 Publications (2017–2020)
Related Software: R; laeken; IVEware; synthpop; SAS; MICE; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Mathematics education (97-XX)

AttnGAN

Software Authors:   Tao Xu, Pengchuan Zhang, Qiuyuan Huang, Han Zhang, Zhe Gan, Xiaolei Huang, Xiaodong He
Referenced in: 3 Publications (2019–2021)
Related Software: BigGAN; Wasserstein GAN; CIFAR; Python; StackGAN; InfoGAN; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Statistics (62-XX); Numerical analysis (65-XX)

Blast2GO

Software Authors:   Conesa, A., Götz, S., García-Gómez, J.M., Terol, J., Talón, M., Robles, M.
Referenced in: 2 Publications (2019–2020)
Related Software: DAVID; Pfam; KEGG; MODELLER; InterProScan; I-TASSER; …
Main Fields: General and overarching topics; collections (00-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

CartoDraw

Software Authors:   Keim, D.A., North, S.C., Panse, C.
Referenced in: 4 Publications (2005–2018)
Related Software: ABF++; MANET; Polaris; Gql; ADDTREE/P; EXPLOR4; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

Cluster-C

Software Authors:   Mohseni-Zadeh, S.; Brézellec, P.; Risler, J.-L.
Referenced in: 6 Publications (2004–2013)
Related Software: BLAST; PSI-BLAST; Algorithm 457; MrBayes; ProClust; MEGA; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

CMfinder

Software Authors:   Z. Yao, Z. Weinberg, W.L. Ruzzo
Referenced in: 4 Publications (2008–2018)
Related Software: Infernal; Rfam; pLoc-mHum; FoldRate; iDNA4mC; PROSPERous; …
Main Fields: General and overarching topics; collections (00-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

DIAL

Software Authors:   F. Ferrè; Y. Ponty; W. A. Lorenz; Peter Clote
Referenced in: 3 Publications (2008–2015)
Related Software: ARTS; MAMMOTH; FRASS; iPARTS; FR3D; SARSA; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

DV-Curve

Software Authors:   Zhu-Jin Zhang
Referenced in: 5 Publications (2010–2016)
Related Software: 2D-MH; Clustal X; BLAST; PSI-BLAST; PHYLIP; FoldRate; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

GHOST

Software Authors:   Rob Patro; Carl Kingsford
Referenced in: 6 Publications (2013–2021)
Related Software: IsoRank; SPINAL; L-GRAAL; IsoRankN; NETAL; HubAlign; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

LargeVis

Software Authors:   Jian Tang, Jingzhou Liu, Ming Zhang, Qiaozhu Mei
Referenced in: 5 Publications (2018–2022)
Related Software: largeVis; UMAP; t-SNE; Scikit; UCI-ml; openTSNE; …
Main Fields: Statistics (62-XX); Computer science (68-XX)

MatchNet

Software Authors:   Xufeng Han; Thomas Leung; Yangqing Jia; Rahul Sukthankar; Alexander C. Berg
Referenced in: 5 Publications (2016–2022)
Related Software: HPatches; TILDE; SuperPoint; LF-Net; Key.Net; FlowNet; …
Main Fields: Computer science (68-XX)

MBT

Software Authors:   Daelemans, W., Zavrel, J., Berck, P., Gillis, S.
Referenced in: 5 Publications (1999–2005)
Related Software: Penn Treebank; TreeTagger
Main Fields: General and overarching topics; collections (00-XX); Computer science (68-XX)

NICE

Software Authors:   Halilovič, Miroslav; Vrh, Marko; Štok, Boris
Referenced in: 6 Publications (2009–2022)
Related Software: ABAQUS; GitHub; UMAT; HYPLAS; FEAPpv; TRESNEI; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

PFRES

Software Authors:   Chen K, Kurgan L.
Referenced in: 5 Publications (2009–2019)
Related Software: LIBSVM; Cell-PLoc; ProLanGO; QAcon; iNuc-STNC; iPhos-PseEn; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

ProClust

Software Authors:   Pipenbacher P., Schliep A., Schneckener S., Schonhuth A., Schomburg D., Schrader R.
Referenced in: 4 Publications (2007–2020)
Related Software: BLAST; PSI-BLAST; GeneRAGE; Algorithm 457; MrBayes; Cluster-C; …
Main Fields: Statistics (62-XX); Operations research, mathematical programming (90-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

RepFinder

Software Authors:   Cheng M M, Zhang F L, Mitra N J, Huang X L, Hu S M
Referenced in: 1 Publication (2011)
Related Software: Sketch2Photo; Photosketcher; GrabCut
Main Fields: Approximations and expansions (41-XX); Numerical analysis (65-XX); Information and communication theory, circuits (94-XX)

SAGA

Software Authors:   Tian, Y.; Mceachin, R. C.; Santos, C.; States, D. J.; Patel, J. M.
Referenced in: 3 Publications (2014–2016)
Related Software: GADDI; Fg-index; TALE; SING; SAPPER; GraphGrep; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

SCPRED

Software Authors:   Lukasz Kurgan; Krzysztof Cios; Ke Chen
Referenced in: 4 Publications (2009–2014)
Related Software: LogitBoost; BLAST; PSI-BLAST; MemHyb; Cascleave; E-DRAGON; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

STAMP

Software Authors:   –
Referenced in: 2 Publications (2014–2020)
Related Software: BioOptimizer; GAME; TRANSFAC; R; MODA; Kavosh; …
Main Fields: General and overarching topics; collections (00-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

STITCH

Software Authors:   Michael Kuhn, Damian Szklarczyk, Sune Pletscher-Frankild, Thomas H. Blicher, Christian von Mering, Lars J. Jensen, Peer Bork
Referenced in: 4 Publications (2010–2018)
Related Software: DrugBank; KEGG; RSARF; AFP-Pred; ClusterViz; SDTNBI; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

TOPD/FMTS

Software Authors:   PUIGBO, P., GARCIA-VALLVE, S., McINERNEY, J.O
Referenced in: 5 Publications (2010–2018)
Related Software: PhyloNetwork; MrBayes; Tracer; DensiTree; Partitionfinder; ASTRAL-II; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

VMEXT

Software Authors:   Schubotz, Moritz; Meuschke, Norman; Hepp, Thomas; Cohl, Howard S.; Gipp, Bela
Referenced in: 6 Publications (2017–2022)
Related Software: DLMF; CitePlag; LaTeXML; Maple; LaTeX; BERT; …
Main Fields: General and overarching topics; collections (00-XX); History and biography (01-XX); Computer science (68-XX)

AquaLog

Software Authors:   Lopez V, Uren V, Motta E, Pasin M
Referenced in: 1 Publication (2019)
Related Software: WEBCOOP; DBpedia; SPARQL; WordNet; RDFox; Vadalog; …
Main Fields: Computer science (68-XX)

BIGLIE

Software Authors:   A.K. Head
Referenced in: 5 Publications (2003–2018)
Related Software: LIE; Maple; CRACK; LIEPDE; PDEtools; DESOLV; …
Main Fields: Nonassociative rings and algebras (17-XX); Ordinary differential equations (34-XX); Partial differential equations (35-XX)

E-DRAGON

Software Authors:   Tetko, I. V.; Gasteiger, J.; Todeschini, R.; et al.
Referenced in: 4 Publications (2007–2014)
Related Software: Cell-PLoc; WEKA; iRSpot-PseDNC; iCDI-PseFpt; iNR-PhysChem; iHSP-PseRAAAC; …
Main Fields: Combinatorics (05-XX); Partial differential equations (35-XX); Computer science (68-XX)

GeneRAGE

Software Authors:   Anton J. Enright, Christos A. Ouzounis
Referenced in: 3 Publications (2004–2017)
Related Software: ProClust; MEME; SPADE; gmp; BWA; Bowtie 2; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

GENETAG

Software Authors:   Tanabe, L.; Xie, N.; Thom, L.H.; Matten, W.; Wilbur, W.J.
Referenced in: 1 Publication (2008)
Related Software: GENIA corpus; bootstrap; OpenDMAP; MedPost; ABNER; iHOP; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

GGSA

Software Authors:   Mohammad Bagher Dowlatshahi, Hossein Nezamabadi-pour
Referenced in: 5 Publications (2016–2021)
Related Software: GSA; ABC; Apache Spark; MLlib; UCI-ml; DENDIS; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)