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Found 306 Software Packages (Results 1–100)

ABAQUS

Software Authors:   Simulia (Dassault Systemes); ABAQUS Inc
Referenced in: 1,577 Publications (1985–2022)
Related Software: UMAT; ABAQUS/Standard; ABAQUS/Explicit; Matlab; ANSYS; LS-DYNA; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

SparseMatrix

Software Authors:   Davis, Timothy A; Hu, Yifan
Referenced in: 739 Publications (1997–2022)
Related Software: LAPACK; mctoolbox; Matlab; METIS; ILUT; HSL; …
Main Fields: Combinatorics (05-XX); Linear and multilinear algebra; matrix theory (15-XX); Numerical analysis (65-XX)

Ada95

Software Authors:   Jean Ichbiah
Referenced in: 274 Publications (1979–2022)
Related Software: Modula; Eiffel; Smalltalk; Simula 67; ALGOL 68; MPFR; …
Main Fields: Partial differential equations (35-XX); Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX)

MPT

Software Authors:   M. Kvasnica; P. Grieder; M. Baoti; ETH Zürich; Borrelli, Francesco
Referenced in: 229 Publications (2004–2022)
Related Software: YALMIP; CPLEX; Matlab; Hybrid Toolbox; Gurobi; fast_mpc; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX); Computer science (68-XX)

OpenCL

Software Authors:   Khronos OpenCL Working Group
Referenced in: 185 Publications (2009–2022)
Related Software: CUDA; MPI; OpenACC; Matlab; CUBLAS; Thrust; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

Boost

Software Authors:   Siek J; Lee L; Lumsdaine A; J. Maurer; S. Watanabe
Referenced in: 185 Publications (2004–2022)
Related Software: Boost C++ Libraries; BGL; CGAL; PETSc; CUDA; LAPACK; …
Main Fields: Combinatorics (05-XX); Numerical analysis (65-XX); Computer science (68-XX)

CUDD

Software Authors:   Fabio Somenzi
Referenced in: 150 Publications (1997–2022)
Related Software: NuSMV; SPIN; PRISM; MiniSat; PolyBoRi; SINGULAR; …
Main Fields: Mathematical logic and foundations (03-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

Boost C++ Libraries

Software Authors:   http://www.boost.org/community/, Beman Dawes, David Abrahams, Rene Rivera
Referenced in: 106 Publications (2005–2022)
Related Software: Boost; BGL; PETSc; R; CUDA; CGAL; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Mechanics of deformable solids (74-XX)

SOFTSUSY

Software Authors:   B.C. Allanach
Referenced in: 77 Publications (2001–2021)
Related Software: Spheno; SuSpect; micrOMEGAs; NMHDECAY; MicrOMEGAs 2.0; FeynHiggs; …
Main Fields: Statistics (62-XX); Quantum theory (81-XX); Statistical mechanics, structure of matter (82-XX)

BNT

Software Authors:   Kevin Murphy
Referenced in: 58 Publications (2001–2021)
Related Software: TETRAD; UCI-ml; LIBSVM; Matlab; PRMLT; RAIcode; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

Spheno

Software Authors:   W. Porod
Referenced in: 58 Publications (2007–2022)
Related Software: SARAH; SOFTSUSY; micrOMEGAs; SuSpect; FeynArts; MicrOMEGAs 2.0; …
Main Fields: Operator theory (47-XX); Numerical analysis (65-XX); Quantum theory (81-XX)

FDL3DI

Software Authors:   Gaitonde, Datta V.; Visbal, Miguel R.
Referenced in: 56 Publications (2001–2022)
Related Software: XFOIL; MPI; SOLA; HE-E1GODF; HIGAN; DGM; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

CosmoMC

Software Authors:   Antony Lewis
Referenced in: 42 Publications (2010–2022)
Related Software: CAMB; CLASS; MultiNest; GADGET; Monte Python; Python; …
Main Fields: Partial differential equations (35-XX); Statistics (62-XX); Quantum theory (81-XX)

RAMSES

Software Authors:   R. Teyssier
Referenced in: 37 Publications (2006–2022)
Related Software: NIRVANA; GADGET; FLASH; ENZO; PARAMESH; Pluto; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

SLEIGN2

Software Authors:   Bailey, P.B.; Everitt, W.N.; Zettl, A
Referenced in: 41 Publications (1991–2021)
Related Software: SLEDGE; MATSLISE; SLTSTPAK; SLDRIVER; SLCPM12; Matlab; …
Main Fields: Ordinary differential equations (34-XX); Operator theory (47-XX); Numerical analysis (65-XX)

ERATO

Software Authors:   Gruber, R.; Troyon, F.; Berger, D.; Bernard, L. C.; Roussert, S.; Schreiber, R.; Kerner, W.; Schneider, W.; Roberts, K. V.
Referenced in: 40 Publications (1979–2022)
Related Software: XTOR; CHEASE; GATO; CASTOR; ECOM; FINESSE; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

FLAME

Software Authors:   Bientinese, Paolo; Quintana-Ortí, Enrique S.; van de Geijn, Robert A
Referenced in: 38 Publications (1997–2021)
Related Software: LAPACK; BLAS; ATLAS; SPIRAL; PLAPACK; libflame; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

NMHDECAY

Software Authors:   Ulrich Ellwanger, Cyril Hugonie
Referenced in: 36 Publications (2001–2017)
Related Software: NMSSMTools; SOFTSUSY; micrOMEGAs; NMSPEC; MicrOMEGAs 2.0; Spheno; …
Main Fields: Commutative algebra (13-XX); Statistics (62-XX); Quantum theory (81-XX)

MoDeST

Software Authors:   D'Argenio, Pedro R.; Hermanns, Holger; Katoen, Joost-Pieter; Klaren, Ric
Referenced in: 31 Publications (2001–2021)
Related Software: PRISM; Uppaal; HyTech; IF-2.0; MOTOR; CADP; …
Main Fields: Mathematical logic and foundations (03-XX); Probability theory and stochastic processes (60-XX); Computer science (68-XX)

BioModels

Software Authors:   Le Novere, N., Bornstein, B., Broicher, A., Courtot, M., Donizelli, M., Dharuri, H., Li, L., Sauro, H., Schilstra, M., Shapiro, B., Snoep, J.L., Hucka, M
Referenced in: 30 Publications (2008–2022)
Related Software: COPASI; KEGG; Celldesigner; PoCaB; Bio-PEPA; PRISM; …
Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX)

LASS

Software Authors:   Stilian A. Stoev
Referenced in: 29 Publications (1997–2021)
Related Software: longmemo; wmtsa; Matlab; NESToolbox; fArma; nlt; …
Main Fields: History and biography (01-XX); Harmonic analysis on Euclidean spaces (42-XX); Probability theory and stochastic processes (60-XX)

GADMM

Software Authors:   Fang, Ethan X.; He, Bingsheng; Liu, Han; Yuan, Xiaoming
Referenced in: 29 Publications (2015–2022)
Related Software: UNLocBoX; PDCO; UCI-ml; RecPF; BADMM; iPiano; …
Main Fields: Operator theory (47-XX); Calculus of variations and optimal control; optimization (49-XX); Statistics (62-XX)

preCICE

Software Authors:   Hans-Joachim Bungartz, Gerasimos Chourdakis, Kyle Davis, Berhard Gatzhammer, Florian Lindner, Miriam Mehl, Alexander Rusch, Benjamin Rüth, Klaudius Scheufele, Frédéric Simonis, Amin Totounferoush, Benjamin Uekermann
Referenced in: 26 Publications (2010–2022)
Related Software: MpCCI; deal.ii; MUI; OpenFOAM; FEniCS; UMFPACK; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Mechanics of deformable solids (74-XX)

RuleML

Software Authors:   Eberhart, Andreas
Referenced in: 20 Publications (2002–2020)
Related Software: swrl; TRIPLE; Protege; PyGaze; DeepRED; Psychophysics Toolbox; …
Main Fields: Mathematical logic and foundations (03-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

COBRA

Software Authors:   Sanchez, R.; Hirshman, S.P.; Whitson, J.C.; Ware, A.S.
Referenced in: 26 Publications (1998–2012)
Related Software: ARPACK; Eigtool; testmatrix; SPARSKIT; ITSOL; Seigtool; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

NMSSMTools

Software Authors:   Ulrich Ellwanger; John F. Gunion; Cyril Hugonie
Referenced in: 26 Publications (2006–2017)
Related Software: NMHDECAY; micrOMEGAs; SOFTSUSY; MicrOMEGAs 2.0; NMSPEC; Spheno; …
Main Fields: Quantum theory (81-XX); Relativity and gravitational theory (83-XX)

PARSEC

Software Authors:   Bienia, C.; Kumar, S.; Singh, J. P.; Li, K.
Referenced in: 7 Publications (2010–2021)
Related Software: SPLASH-2; ALPBench; LLVM; Cilk; MapReduce; PAPI; …
Main Fields: Mathematical logic and foundations (03-XX); Probability theory and stochastic processes (60-XX); Computer science (68-XX)

OpenGeoSys

Software Authors:   O. Kolditz
Referenced in: 21 Publications (2012–2022)
Related Software: PFLOTRAN; PHREEQC; DuMuX; GEMSelektor; PhreeqcRM; GEMS3K; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

QUESO

Software Authors:   Ernesto Prudencio; Karl W. Schulz
Referenced in: 21 Publications (2011–2022)
Related Software: libMesh; DAKOTA; PETSc; deal.ii; DDDAS; GRINS; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

SuSpect

Software Authors:   Djouadi, Abdelhak; Kneur, Jean-Loïc; Moultaka, Gilbert
Referenced in: 22 Publications (2006–2018)
Related Software: SOFTSUSY; Spheno; micrOMEGAs; FeynHiggs; ISAJet; MicrOMEGAs 2.0; …
Main Fields: General and overarching topics; collections (00-XX); Quantum theory (81-XX); Statistical mechanics, structure of matter (82-XX)

MatSol

Software Authors:   Tomáš Brzobohatý; Alexandros Markopoulos; Tomáš Kozubek
Referenced in: 24 Publications (2010–2020)
Related Software: Total FETI; Matlab; TFETI; symrcm; HYPLAS; METIS; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX)

Orbifolder

Software Authors:   H.P. Nilles; S. Ramos-Sánchez; P.K.S. Vaudrevange; A. Wingerter
Referenced in: 23 Publications (2012–2020)
Related Software: GAP; TensorFlow; CARAT; PRMLT; Wasserstein GAN; Inception-v4; …
Main Fields: Algebraic geometry (14-XX); Algebraic topology (55-XX); Manifolds and cell complexes (57-XX)

GPCR-2L

Software Authors:   Xiao, X.; Wang, P.
Referenced in: 22 Publications (2011–2018)
Related Software: iLoc-Euk; Cell-PLoc; Plant-mPLoc; Quat-2L; Euk-mPLoc; GPCR-GIA; …
Main Fields: Combinatorics (05-XX); Measure and integration (28-XX); Statistics (62-XX)

QNMspectral

Software Authors:   Aron Jansen
Referenced in: 20 Publications (2017–2022)
Related Software: Mathematica; Ringdown; HeunGPrime; HeunG; DLMF; GitHub; …
Main Fields: Mechanics of particles and systems (70-XX); Fluid mechanics (76-XX); Quantum theory (81-XX)

BayesSpec

Software Authors:   Rosen, O., Wood, S., Stoffer, D.
Referenced in: 19 Publications (2012–2022)
Related Software: astsa; BayesDA; beyondWhittle; R; bsplinePsd; PRMLT; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

Dirac++

Software Authors:   Mocken, Guido R.; Keitel, Christoph H.
Referenced in: 18 Publications (2008–2021)
Related Software: Dirac_Laczos; FFTW; PETSc; SLEPc; Boost; CUDA; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Optics, electromagnetic theory (78-XX)

haarfisz

Software Authors:   Fryzlewicz, Piotr; Nason, Guy P.
Referenced in: 18 Publications (2006–2022)
Related Software: wavethresh; R; WaveThresh4; wmtsa; BootWPTOS; locits; …
Main Fields: Harmonic analysis on Euclidean spaces (42-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

JADAMILU

Software Authors:   Matthias Bollhöfer, Yvan Notay
Referenced in: 16 Publications (2007–2019)
Related Software: ARPACK; PRIMME; JDQZ; JDQR; Anasazi; PARDISO; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Special functions (33-XX); Statistics (62-XX)

ApaTools

Software Authors:   Zeng, Zhonggang
Referenced in: 16 Publications (2008–2020)
Related Software: PHCpack; MultRoot; Bertini; Matlab; SNAP; SINGULAR; …
Main Fields: Field theory and polynomials (12-XX); Commutative algebra (13-XX); Algebraic geometry (14-XX)

HasCasl

Software Authors:   Schr"oder, Lutz; Mossakowski, Till
Referenced in: 17 Publications (2002–2015)
Related Software: CASL; Haskell; Hets; Maude; F#; Coq; …
Main Fields: Mathematical logic and foundations (03-XX); Category theory; homological algebra (18-XX); Computer science (68-XX)

KIOPS

Software Authors:   Gaudreault, Stéphane; Rainwater, Greg; Tokman, Mayya
Referenced in: 17 Publications (2018–2022)
Related Software: phipm; Algorithm 919; Expokit; mftoolbox; Expint; GitHub; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Partial differential equations (35-XX); Numerical analysis (65-XX)

MobileNetV2

Software Authors:   Mark Sandler, Andrew Howard, Menglong Zhu, Andrey Zhmoginov, Liang-Chieh Chen
Referenced in: 10 Publications (2020–2022)
Related Software: ImageNet; MobileNets; AlexNet; ShuffleNet; Xception; CIFAR; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Statistics (62-XX); Numerical analysis (65-XX)

DSUBSP

Software Authors:   P. Van Dooren
Referenced in: 16 Publications (1984–2020)
Related Software: LAPACK; HQR3; EISPACK; mctoolbox; JDQR; BLAS; …
Main Fields: General and overarching topics; collections (00-XX); Linear and multilinear algebra; matrix theory (15-XX); Difference and functional equations (39-XX)

DVDSON

Software Authors:   Stathopoulos, Andreas; Fischer, Charlotte F.
Referenced in: 15 Publications (1994–2019)
Related Software: lobpcg.m; ARPACK; LAPACK; PRIMME; JDQZ; JDQR; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Partial differential equations (35-XX); Statistics (62-XX)

PyTransport

Software Authors:   David J. Mulryne, John W. Ronayne
Referenced in: 15 Publications (2017–2021)
Related Software: CppTransport; BINGO; Python; MultiModeCode; CandS
Main Fields: Measure and integration (28-XX); Geometry (51-XX); Differential geometry (53-XX)

ESTIMA

Software Authors:   Jategaonkar, Ravindra; Thielecke, Frank
Referenced in: 15 Publications (1993–2010)
Related Software: R; MIM; TETRAD; polymake; AS 176; KernSmooth
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

GW-WINKS

Software Authors:   Woodward, Wayne A.; Gray, Henry L.; Elliott, Alan C.
Referenced in: 15 Publications (2012–2022)
Related Software: astsa; R; Matlab; tswge; S-PLUS
Main Fields: General and overarching topics; collections (00-XX); Mathematical logic and foundations (03-XX); Dynamical systems and ergodic theory (37-XX)

SpectrUW

Software Authors:   Deconinck, Bernard; Kiyak, Firat; Carter, John D.; Kutz, J.Nathan
Referenced in: 15 Publications (2007–2020)
Related Software: STABLAB; AUTO; GitHub; HomCont; wavetrain; LAPACK; …
Main Fields: Partial differential equations (35-XX); Dynamical systems and ergodic theory (37-XX); Operator theory (47-XX)

FAST-PT

Software Authors:   Fang, Xiao; Blazek, Jonathan A.; McEwen, Joseph E.; Hirata, Christopher M.
Referenced in: 14 Publications (2017–2021)
Related Software: CAMB; GetDist; SciPy; emcee; NumPy; Matplotlib; …
Main Fields: Partial differential equations (35-XX); Statistics (62-XX); Optics, electromagnetic theory (78-XX)

MERLIN

Software Authors:   Papageorgiou, D.G.; Demetropoulos, I.N.; Lagaris, I.E.
Referenced in: 13 Publications (1992–2015)
Related Software: MCL; PANMIN; TOLMIN; SimPed; MinFinder; GEATbx; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Quantum theory (81-XX)

azove

Software Authors:   Behle, Markus
Referenced in: 13 Publications (2007–2021)
Related Software: PPL; PORTA; barvinok; lrs; LattE; CPLEX; …
Main Fields: Combinatorics (05-XX); Convex and discrete geometry (52-XX); Computer science (68-XX)

batchtools

Software Authors:   Michel Lang, Bernd Bischl, Dirk Surmann
Referenced in: 9 Publications (2017–2021)
Related Software: R; OpenML; mlr; clustermq; parallelMap; tidyverse; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Numerical analysis (65-XX)

maiprogs

Software Authors:   Maischak, M
Referenced in: 12 Publications (2004–2015)
Related Software: Open CASCADE; HyENA; AHMED; Intel TBB; Python; BETL; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

EVSL

Software Authors:   R. Li, Y. Xi, L. Erlandson, Y. Saad
Referenced in: 11 Publications (2019–2022)
Related Software: ARPACK; SparseMatrix; CIRR; LAPACK; FEAST; PRIMME; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

CPsuperH

Software Authors:   J.S. Lee; A. Pilaftsis; M. Carena; S.Y. Choi; M. Drees; J. Ellis; C.E.M. Wagner
Referenced in: 10 Publications (2007–2013)
Related Software: SOFTSUSY; SuSpect; FeynHiggs; ISAJet; SLHAplus; CalcHEP; …
Main Fields: Optics, electromagnetic theory (78-XX); Quantum theory (81-XX); Relativity and gravitational theory (83-XX)

nbodykit

Software Authors:   Nick Hand, Yu Feng, Florian Beutler, Yin Li, Chirag Modi, Uros Seljak, Zachary Slepian
Referenced in: 10 Publications (2019–2021)
Related Software: CLASS; Healpix; DTFE; GitHub; ECOSMOG; HaloGen; …
Main Fields: Mechanics of particles and systems (70-XX); Optics, electromagnetic theory (78-XX); Quantum theory (81-XX)

QuEST

Software Authors:   Ledoit, Olivier; Wolf, Michael
Referenced in: 11 Publications (2017–2022)
Related Software: OptShrink; SPECTRODE; RMTool; CVXOPT; spcov; Manopt; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

Rk-opt

Software Authors:   Ketcheson, D.I., Parsani, M., Ahmadia, A.J.
Referenced in: 10 Publications (2015–2022)
Related Software: GitHub; RODAS; NodePy; Nek5000; Matplotlib; NumPy; …
Main Fields: Ordinary differential equations (34-XX); Partial differential equations (35-XX); Numerical analysis (65-XX)

BINGO

Software Authors:   Dhiraj Kumar Hazra, L. Sriramkumar, Jerome Martin
Referenced in: 10 Publications (2017–2021)
Related Software: CppTransport; PyTransport; CAMB; GetDist; polychord; CosmoMC; …
Main Fields: Measure and integration (28-XX); Partial differential equations (35-XX); Probability theory and stochastic processes (60-XX)

CASTOR

Software Authors:   Kerner, W.; Goedbloed, J. P.; Huysmans, G. T. A.; Poedts, S.; Schwarz, E.
Referenced in: 10 Publications (1998–2022)
Related Software: FINESSE; ERATO; PHOENIX; GATO; LIGKA; GitHub; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Global analysis, analysis on manifolds (58-XX); Numerical analysis (65-XX)

CLASSgal

Software Authors:   Enea Di Dio, Francesco Montanari, Julien Lesgourgues, Ruth Durrer
Referenced in: 10 Publications (2017–2022)
Related Software: CLASS; COFFE; CAMB; CosmoDC2; healpy; Astropy; …
Main Fields: Mechanics of particles and systems (70-XX); Optics, electromagnetic theory (78-XX); Quantum theory (81-XX)

CTIGAR

Software Authors:   Birgmeier, J., Bradley, A.R., Weissenbacher, G.
Referenced in: 8 Publications (2016–2021)
Related Software: z3; PySMT; MathSAT5; nuXmv; Kind 2; SMT-LIB; …
Main Fields: Mathematical logic and foundations (03-XX); Ordinary differential equations (34-XX); Computer science (68-XX)

Sips

Software Authors:   Zhang, Hong; Smith, Barry; Sternberg, Michael; Zapol, Peter
Referenced in: 9 Publications (2007–2020)
Related Software: PETSc; SLEPc; LAPACK; JDQZ; JDQR; SparseMatrix; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Partial differential equations (35-XX); Numerical analysis (65-XX)

DENDRAL

Software Authors:   Buchanan, Bruce G.; Sutherland, Georgia L.; Feigenbaum, E. A.
Referenced in: 7 Publications (1970–2005)
Related Software: Swift; BUGS; Venture; Church; Lasagne; Keras; …
Main Fields: History and biography (01-XX); Combinatorics (05-XX); Statistics (62-XX)

FlexibleSUSY

Software Authors:   P. Athron, J.-H. Park, D. Stöckinger, A. Voigt
Referenced in: 8 Publications (2015–2022)
Related Software: SARAH; Spheno; SOFTSUSY; SuSpect; micrOMEGAs; HiggsSignals; …
Main Fields: Quantum theory (81-XX); Relativity and gravitational theory (83-XX)

NR-2L

Software Authors:   Wang P, Xiao X, Chou KC
Referenced in: 9 Publications (2012–2018)
Related Software: Cell-PLoc; iLoc-Euk; iLoc-Virus; GPCR-2L; iLoc-Gpos; Plant-mPLoc; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

Z3-str

Software Authors:   Zheng Y, Zhang X, Ganesh V
Referenced in: 8 Publications (2015–2021)
Related Software: S3; HAMPI; z3; PASS; Stranger; Norn; …
Main Fields: Mathematical logic and foundations (03-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

GYGLES

Software Authors:   Fivaz, M.; Brunner, S.; de Ridder, G.; Sauter, O.; Tran, T.M.; Vaclavik, J.; Villard, L.; Appert, K.
Referenced in: 7 Publications (1998–2020)
Related Software: gs2; GYSELA; GENE; XTOR; CHEASE; XGC0; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

MathOptInterface.jl

Software Authors:   Benoit Legat, Oscar Dowson, Joaquim Dias Garcia, Miles Lubin
Referenced in: 6 Publications (2021–2022)
Related Software: Julia; JuMP; Gurobi; Mosek; Pyomo; CPLEX; …
Main Fields: Computer science (68-XX); Operations research, mathematical programming (90-XX)

MOTOR

Software Authors:   Katoen, Joost-Pieter; Bohnenkamp, Henrik; Klaren, Ric; Hermanns, Holger
Referenced in: 5 Publications (2004–2013)
Related Software: Uppaal; MoDeST; IF-2.0; Kronos; SPIN; UPPAAL CORA; …
Main Fields: Computer science (68-XX)

Rssa

Software Authors:   Anton Korobeynikov, Alex Shlemov, Konstantin Usevich, Nina Golyandina
Referenced in: 6 Publications (2014–2018)
Related Software: R; CaterpillarSSA; forecast; zoo; svd; raster; …
Main Fields: Approximations and expansions (41-XX); Harmonic analysis on Euclidean spaces (42-XX); Statistics (62-XX)

SERK2v3

Software Authors:   Kleefeld, B.; Martín-Vaquero, J.
Referenced in: 8 Publications (2016–2020)
Related Software: SERK2; RKC; RODAS; MEBDF; DASSL; VODE; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

varSelRF

Software Authors:   Ramon Diaz-Uriarte
Referenced in: 2 Publications (2009)
Related Software: GeneSrF; R; randomForest; Boruta; FSelector; ipred; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

dnner

Software Authors:   Marylou Gabrié, Andre Manoel, Clément Luneau, Jean Barbier, Nicolas Macris, Florent Krzakala, Lenka Zdeborová
Referenced in: 7 Publications (2019–2021)
Related Software: lsd; TheCommitteeMachine; AlexNet; GNMT; ImageNet; Adam; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Computer science (68-XX)

EdgeRewire

Software Authors:   Chan, Hau; Akoglu, Leman
Referenced in: 7 Publications (2016–2021)
Related Software: KONECT; NetComm; Pajek; NetworKit; igraph; SNAP; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Operations research, mathematical programming (90-XX)

MENDEL

Software Authors:   Lange, K.; Cantor, R.; Horvath, S.; Perola, M.; Sabatti, C.; Sinsheimer, J.; Sobel, E.
Referenced in: 6 Publications (2012–2019)
Related Software: spcov; lme4; BOADICEA; Pedcheck; ViennaRNA; QAPgrid; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)

QPmR

Software Authors:   Vyhlídal, Tomáš; Zítek, Pavel
Referenced in: 7 Publications (2014–2022)
Related Software: YALMIP; GradSamp; mctoolbox; SDPT3; OPQ; TRACE-DDE; …
Main Fields: Ordinary differential equations (34-XX); Systems theory; control (93-XX)

Selfis

Software Authors:   Karagiannis T.
Referenced in: 3 Publications (2006–2013)
Related Software: longmemo; SSE; Fractan; DiskSim; VTune
Main Fields: Computer science (68-XX); Operations research, mathematical programming (90-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

SUSY Phenomenology toolbox

Software Authors:   F. Staub, T. Ohl, W. Porod, C. Speckner
Referenced in: 7 Publications (2012–2015)
Related Software: SARAH; Spheno; HiggsBounds; HiggsSignals; PreSARAH; CosmoTransitions; …
Main Fields: Quantum theory (81-XX); Relativity and gravitational theory (83-XX)

FLYCHK

Software Authors:   H. K. Chung, M. H. Chen, W. L. Morgan, Y. Ralchenko, R. W. Lee
Referenced in: 6 Publications (2010–2021)
Related Software: HULLAC; ABAKO/RAPCAL; SPECT3D; IRIS; MIXKIP/RAPCAL; HERACLES; …
Main Fields: Computer science (68-XX); Fluid mechanics (76-XX); Optics, electromagnetic theory (78-XX)

iFeature

Software Authors:   Chen, Z.; Zhao, P. Y.; Li, F.; Leier, A.; Marquez-Lago, T. T.; Wang, Y.; Webb, G. I.; Smith, A. I.; Daly, R. J.; Song, J.
Referenced in: 6 Publications (2018–2022)
Related Software: pLoc-mHum; iPTM-mLys; iRSpot-PseDNC; PseKNC; Quokka; iKcr-PseEns; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

STR

Software Authors:   Michelangelo Preti
Referenced in: 5 Publications (2019–2021)
Related Software: WiLE; FIRE5; Mathematica
Main Fields: Statistics (62-XX); Mechanics of particles and systems (70-XX); Quantum theory (81-XX)

SUSYGEN

Software Authors:   Katsanevas, Stavros; Morawitz, Peter
Referenced in: 5 Publications (1998–2007)
Related Software: SOFTSUSY; SDECAY; Spheno; SuSpect; JETSET; micrOMEGAs; …
Main Fields: Several complex variables and analytic spaces (32-XX); Dynamical systems and ergodic theory (37-XX); Differential geometry (53-XX)

Cosmos++

Software Authors:   Anninos, P.; Fragile, P. C.; Salmonson, J. D.
Referenced in: 5 Publications (2007–2021)
Related Software: WhiskyMHD; ECHO; HARM; HLLE; RAM; Pluto; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

3D Alpha Shapes

Software Authors:   Tran Kai Frank Da, Sébastien Loriot, Mariette Yvinec
Referenced in: 5 Publications (2010–2020)
Related Software: CGAL; PersistenceImages; PHAT; CHEXVIS; CAMPARY; Thrust; …
Main Fields: Convex and discrete geometry (52-XX); Statistics (62-XX); Numerical analysis (65-XX)

EuclidEmulator

Software Authors:   Euclid Collaboration, Mischa Knabenhans, Joachim Stadel, Stefano Marelli, Doug Potter, Romain Teyssier, Laurent Legrand, Aurel Schneider, Bruno Sudret, Linda Blot, Saeeda Awan, Carlo Burigana, Carla Sofia Carvalho, Hannu Kurki-Suonio, Gabriele Sirri
Referenced in: 5 Publications (2019–2021)
Related Software: CLASS; FAST-PT; CosmoNet; CAMB; Adam; CosmoMC; …
Main Fields: Commutative algebra (13-XX); Fluid mechanics (76-XX); Quantum theory (81-XX)

GutenTag

Software Authors:   Tabb, D. L., Saraf, A., Yates, J. R.
Referenced in: 1 Publication (2010)
Related Software: TANDEM; Pinnacle; Decon2LS
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

Hume

Software Authors:   Hammond, K., Michaelson, G.
Referenced in: 3 Publications (2007–2011)
Related Software: Cyclone; Cedalion; JastAdd; Feldspar; mbeddr; ArchJava; …
Main Fields: Computer science (68-XX)

IGLOO

Software Authors:   Robert G. Crittenden, Neil G. Turok
Referenced in: 4 Publications (2007–2020)
Related Software: Healpix; GLESP; FFTPACK; spinsfast; s2hat; FFTW; …
Main Fields: Numerical analysis (65-XX); Relativity and gravitational theory (83-XX); Astronomy and astrophysics (85-XX)

LEMan

Software Authors:   Popovich, P.; Cooper, W.A.; Villard, L.
Referenced in: 5 Publications (2006–2011)
Related Software: LIGKA; SPECTOR3D; ORB5; TERPSICHORE; PETSc
Main Fields: Numerical analysis (65-XX); Fluid mechanics (76-XX); Optics, electromagnetic theory (78-XX)

NetLSD

Software Authors:   Anton Tsitsulin, Davide Mottin, Panagiotis Karras, Alex Bronstein, Emmanuel Müller
Referenced in: 2 Publications (2020–2021)
Related Software: Python; PyTorch; SciPy; NumPy; NetworkX; Scikit; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Computer science (68-XX)

PARSHL

Software Authors:   Smith, J.O.; Serra, X.
Referenced in: 2 Publications (2011–2017)
Related Software: SymPy; LIBSVM
Main Fields: Harmonic analysis on Euclidean spaces (42-XX); Functional analysis (46-XX); Information and communication theory, circuits (94-XX)

quantspec

Software Authors:   Kley, Tobias
Referenced in: 4 Publications (2014–2021)
Related Software: R; devtools; testthat; quantreg; astsa; zoo; …
Main Fields: Statistics (62-XX)

SAFL

Software Authors:   Mycroft, Alan; Sharp, Richard
Referenced in: 5 Publications (2000–2007)
Related Software: Handel-C; SystemC; Cayenne; LEGO; Coq; PERL
Main Fields: Computer science (68-XX)

Spectral

Software Authors:   Corrêa Silva, E.V.; Monerat, G.A.; de Oliveira Neto, G.; Ferreira Filho, L.G.
Referenced in: 5 Publications (2014–2019)
Related Software: nuSpectral; FFTW; R; Spectra; Octave; Maple
Main Fields: Real functions (26-XX); Partial differential equations (35-XX); Numerical analysis (65-XX)

SpekCalc

Software Authors:   G. Poludniowski, G. Landry, F. Deblois, P. M. Evans, F. Verhaegen
Referenced in: 5 Publications (2013–2020)
Related Software: ASTRA; Adam; TensorFlow; FSIM
Main Fields: Partial differential equations (35-XX); Integral transforms, operational calculus (44-XX); Numerical analysis (65-XX)

ACE+

Software Authors:   ESI Group (commercial)
Referenced in: 4 Publications (2010–2016)
Related Software: FUN3D; Turbulence Modeling; enGrid; OpenFOAM; FLUENT; Matlab; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

ChemmineR

Software Authors:   Y. Eddie Cao, Kevin Horan, Tyler Backman, Thomas Girke
Referenced in: 2 Publications (2019)
Related Software: Algorithm 457; CTS; xml2; dplyr; roxygen2; stringr; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

CRYSTAL09

Software Authors:   Zhuravlyov, Yu.N.; Lisitsyn, V.M.
Referenced in: 4 Publications (2001–2012)
Related Software: CRYSTAL; QMCPACK; GAUSSIAN; GAMESS; QWalk
Main Fields: Classical thermodynamics, heat transfer (80-XX); Quantum theory (81-XX); Statistical mechanics, structure of matter (82-XX)

CTFFIND

Software Authors:   Alexis Rohou, Nikolaus Grigorieff
Referenced in: 3 Publications (2020–2021)
Related Software: RELION; FREALIGN; EMPIAR; DeepPicker; cryoSPARC; TMaCS; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)