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Found 356 Software Packages (Results 1–100)

AUTO

Software Authors:   Doedel, Eusebius, Alan Champneys, Fabio Dercole, Thomas Fairgrieve, Yuri Kuznetsov, Bart Oldeman, Randy Paffenroth, Bjorn Sandstede, Xianjun Wang, and Chenghai Zhang
Cited in: 951 Publications (1981–2022)
Related Software: AUTO-07P; HomCont; AUTO-86; MATCONT; XPPAUT; Matlab; …
Main Fields: Ordinary differential equations (34-XX); Partial differential equations (35-XX); Dynamical systems and ergodic theory (37-XX)

Dynamics

Software Authors:   Nusse, Helena E.; Yorke, James A.
Cited in: 184 Publications (1994–2022)
Related Software: AUTO; HomCont; Mathematica; DSTool; DMC; TISEAN; …
Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX); Mechanics of particles and systems (70-XX)

Robust Control Toolbox

Software Authors:   MathWorks; Balas G, Chiang R, Packard A, Safonov M
Cited in: 153 Publications (1989–2022)
Related Software: Matlab; Control System Toolbox; Mu Analysis and Synthesis Toolbox; LMI toolbox; YALMIP; Optimization Toolbox; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Ordinary differential equations (34-XX); Numerical analysis (65-XX)

Gromacs

Software Authors:   Mark James Abraham; Teemu Murtola; Roland Schulz; Szilárd Páll; Jeremy C.Smith; Berk Hess; Erik Lindahl
Cited in: 99 Publications (2002–2022)
Related Software: NAMD; CHARMM; LINCS; AMBER; VMD; LAMMPS; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

K2

Software Authors:   Marco Thiel, Mamen Romano, André Bergner
Cited in: 118 Publications (2004–2022)
Related Software: TISEAN; igraph; PhysioToolkit; Matlab; longmemo; QSIMVN; …
Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX); Statistics (62-XX)

CHARMM

Software Authors:   B. R. Brooks, R. E. Bruccoleri, B. D. Olafson, D. J. States, S. Swaminathan, M. Karplus
Cited in: 100 Publications (1992–2022)
Related Software: NAMD; Gromacs; APBS; AMBER; VMD; MIBPB; …
Main Fields: Numerical analysis (65-XX); Optics, electromagnetic theory (78-XX); Statistical mechanics, structure of matter (82-XX)

PHAVer

Software Authors:   Frehse, Goran
Cited in: 115 Publications (2005–2022)
Related Software: HyTech; SpaceEx; Uppaal; RSOLVER; HSolver; d/dt; …
Main Fields: Mathematical logic and foundations (03-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

DSTool

Software Authors:   J Guckenheimer, BA Meloon, MR Myers, FJ Wicklin, Michael Patra
Cited in: 104 Publications (1992–2022)
Related Software: AUTO; AUTO-86; HomCont; PITCON; MATCONT; LOCBIF; …
Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX)

VMD

Software Authors:   Andrew Dalke, William Humphrey, Klaus Schulten
Cited in: 75 Publications (1999–2023)
Related Software: NAMD; Gromacs; CHARMM; PyMOL; RasMol; APBS; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

PDE-Net

Software Authors:   Zichao Long, Yiping Lu, Xianzhong Ma, Bin Dong
Cited in: 91 Publications (2019–2022)
Related Software: DGM; Adam; TensorFlow; PyTorch; DeepONet; ImageNet; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

PRED_PREY

Software Authors:   Garvie, Marcus R.; Burkardt, John; Morgan, Jeff
Cited in: 88 Publications (2007–2022)
Related Software: Matlab; wavetrain; DistMesh; CutFEM; MATCONT; PRMLT; …
Main Fields: Ordinary differential equations (34-XX); Partial differential equations (35-XX); Dynamical systems and ergodic theory (37-XX)

NAMD

Software Authors:   James Phillips
Cited in: 65 Publications (1999–2022)
Related Software: Gromacs; CHARMM; VMD; AMBER; CUDA; DESMOND; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

SpaceEx

Software Authors:   Goran Frehse, Colas Le Guernic, Alexandre Donzé, Scott Cotton, Rajarshi Ray,Olivier Lebeltel, Rodolfo Ripado, Antoine Girard,Thao Dang, Oded Maler
Cited in: 77 Publications (2011–2021)
Related Software: HyTech; PHAVer; Flow*; KeYmaera; RSOLVER; dReach; …
Main Fields: Ordinary differential equations (34-XX); Numerical analysis (65-XX); Computer science (68-XX)

LAMMPS

Software Authors:   Plimpton, Steve
Cited in: 61 Publications (1995–2022)
Related Software: Python; Gromacs; NAMD; Peridigm; CUDA; CHARMM; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

SLMC

Software Authors:   Hugo Vieira; Luís Caires
Cited in: 72 Publications (2003–2022)
Related Software: PIPER; PRISM; KLAIM; Maude; Uppaal; BlenX; …
Main Fields: General and overarching topics; collections (00-XX); Mathematical logic and foundations (03-XX); Computer science (68-XX)

AMRCLAW

Software Authors:   M. J. Berger, R. J. LeVeque
Cited in: 70 Publications (1997–2022)
Related Software: CLAWPACK; PARAMESH; GEOCLAW; AMROC; Peano; Chombo; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

ABINIT

Software Authors:   Xavier Gonze; et al.
Cited in: 47 Publications (2004–2022)
Related Software: Quantum Espresso; CASTEP; CheFSI; NWChem; lobpcg.m; WIEN2k; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

Adams

Software Authors:   MSC Software
Cited in: 51 Publications (2005–2022)
Related Software: Matlab; ANSYS; NASTRAN; SIMPACK; ABAQUS; Meschach; …
Main Fields: Computer science (68-XX); Mechanics of particles and systems (70-XX); Mechanics of deformable solids (74-XX)

Multisim

Software Authors:   National Instruments Corporation
Cited in: 48 Publications (2004–2022)
Related Software: Matlab; Fractional Order Chaotic Systems; CNN; DFOC; sysdfod
Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX); Mechanics of deformable solids (74-XX)

NWChem

Software Authors:   Kendall, Ricky A.; Aprà, Edoardo; Bernholdt, David E.; Bylaska, Eric J.; Dupuis, Michel; Fann, George I.; Harrison, Robert J.; Ju, Jialin; Nichols, Jeffrey A.; Nieplocha, Jarek; Straatsma, T.P.; Windus, Theresa L.; Wong, Adrian T.
Cited in: 42 Publications (2000–2023)
Related Software: GAUSSIAN; ABINIT; LAPACK; Quantum Espresso; GAMESS; ScaLAPACK; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Quantum theory (81-XX)

HSolver

Software Authors:   Stefan Ratschan; Zhikun She; Tomáš Dzetkulič
Cited in: 43 Publications (2005–2021)
Related Software: RSOLVER; Benchmarks; HyTech; PHAVer; SpaceEx; Sostools; …
Main Fields: Ordinary differential equations (34-XX); Numerical analysis (65-XX); Computer science (68-XX)

TrueTime

Software Authors:   Anton Cervin, Dan Henriksson, Bo Lincoln, Johan Eker, Karl-Erik Årzén
Cited in: 39 Publications (2005–2021)
Related Software: Matlab; Simulink; Torsche; Uppaal; SeDuMi; AQuoSA; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Probability theory and stochastic processes (60-XX); Computer science (68-XX)

d/dt

Software Authors:   Asarin, Eugene; Dang, Thao; Maler, Oded
Cited in: 38 Publications (2002–2021)
Related Software: HyTech; PHAVer; SpaceEx; RSOLVER; Uppaal; HSolver; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

QuTiP

Software Authors:   J. R. Johansson, P. D. Nation, F. Nori
Cited in: 24 Publications (2015–2022)
Related Software: Python; NumPy; SciPy; WavePacket; QuantumOptics.jl; Krotov; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Probability theory and stochastic processes (60-XX); Computer science (68-XX)

PDB2PQR

Software Authors:   T. Dolinsky, J. Nielsen, A. McCammon, N. Baker
Cited in: 33 Publications (2006–2022)
Related Software: APBS; MIBPB; TABI; tabipb; CHARMM; PBEQ-Solver; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Optics, electromagnetic theory (78-XX)

Pluto

Software Authors:   Mignone, A.; Bodo, G.; Massaglia, S.; Matsakos, T.; Tesileanu, O.; Zanni, C.; Ferrari, A.
Cited in: 33 Publications (2007–2022)
Related Software: Athena; HLLE; RAMSES; NIRVANA; FLASH; ENZO; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

Flow*

Software Authors:   Xin Chen, Erika Ábrahám, Sriram Sankaranarayanan
Cited in: 31 Publications (2015–2022)
Related Software: SpaceEx; KeYmaera; HyTech; PHAVer; dReach; Breach; …
Main Fields: Mathematical logic and foundations (03-XX); Ordinary differential equations (34-XX); Numerical analysis (65-XX)

NEST

Software Authors:   Gewaltig, MO; Diesmann, M.
Cited in: 19 Publications (2008–2021)
Related Software: NEURON; Pynn; Brian; Python; SpiNNaker; Scikit; …
Main Fields: Probability theory and stochastic processes (60-XX); Computer science (68-XX); Statistical mechanics, structure of matter (82-XX)

DL_POLY

Software Authors:   Smith, W.; Yong, C.W.; Rodger, P.M.
Cited in: 24 Publications (2000–2020)
Related Software: Gromacs; CHARMM; DL_POLY_3; AMBER; DL_MONTE; MDAnalysis; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Quantum theory (81-XX)

SINDy

Software Authors:   Loiseau, Jean-Christophe; Brunton, Steven L.
Cited in: 31 Publications (2017–2022)
Related Software: redbKIT; Nek5000; PDE-Net; VAMPnets; Adam; Loewner; …
Main Fields: Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX); Computer science (68-XX)

MATISSE

Software Authors:   Girard, Antoine; Pappas, George J.
Cited in: 30 Publications (2007–2022)
Related Software: HyTech; PHAVer; SpaceEx; Sostools; Matlab; d/dt; …
Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX); Computer science (68-XX)

MuJoCo

Software Authors:   E. Todorov, T. Erez, Y. Tassa
Cited in: 23 Publications (2016–2022)
Related Software: OpenAI Gym; TensorFlow; Adam; PyTorch; GitHub; Python; …
Main Fields: Computer science (68-XX); Mechanics of particles and systems (70-XX); Operations research, mathematical programming (90-XX)

TC-HAT

Software Authors:   Thota, P., Dankowicz, H.
Cited in: 29 Publications (2008–2022)
Related Software: SlideCont; COCO; AUTO; HomCont; MATCONT; DDE-BIFTOOL; …
Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX)

GNA

Software Authors:   Hidde de Jong, Johannes Geiselmann, Céline Hernandez, Michel Page
Cited in: 25 Publications (2006–2021)
Related Software: BIOCHAM; Ginsim; Celldesigner; KEGG; RoVerGeNe; DiVinE; …
Main Fields: Mathematical logic and foundations (03-XX); Ordinary differential equations (34-XX); Computer science (68-XX)

SIESTA

Software Authors:   Soler J.S., Artacho E., Gale J.D., Garcia A., Junquera J., Ordejon P., Sanchez-Portal D
Cited in: 23 Publications (2006–2023)
Related Software: ONETEP; CASTEP; ABINIT; OCTOPUS; CONQUEST; ScaLAPACK; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Mechanics of deformable solids (74-XX)

BacSim

Software Authors:   J. Kreft, G. Booth, J.W.T. Wimpenny
Cited in: 21 Publications (2000–2021)
Related Software: AgentCell; iDynoR; MatPack; FreeFem++; AceFEM; AQUASIM; …
Main Fields: Partial differential equations (35-XX); Statistics (62-XX); Numerical analysis (65-XX)

Celldesigner

Software Authors:   Funahashi, A., Morohashi, M., Kitano, H., Tanimura, N.
Cited in: 17 Publications (2007–2019)
Related Software: KEGG; MetaCyc; BIOCHAM; Reactome; BioModels; COPASI; …
Main Fields: Ordinary differential equations (34-XX); Numerical analysis (65-XX); Computer science (68-XX)

NAMD2

Software Authors:   Kale, Laxmikant; Skeel, Robert; Bhandarkar, Milind; Brunner, Robert; Gursoy, Attila; Krawetz, Neal; Phillips, James; Shinozaki, Aritomo; Varadarajan, Krishnan; Schulten, Klaus
Cited in: 17 Publications (1998–2016)
Related Software: CHARMM; Gromacs; VMD; NAMD; AMBER; Globus Toolkit; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Mechanics of deformable solids (74-XX)

Chrono

Software Authors:   Tasora, Alessandro; Serban, Radu; Mazhar, Hammad; Pazouki, Arman; Melanz, Daniel; Fleischmann, Jonathan; Taylor, Michael; Sugiyama, Hiroyuki; Negrut, Dan
Cited in: 20 Publications (2015–2022)
Related Software: Meschach; GitHub; RODAS; DualSPHysics; CUDA; TFOCS; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Mechanics of particles and systems (70-XX)

GULP

Software Authors:   Gale, Julian D.; Rohl, Andrew L.
Cited in: 19 Publications (1986–2017)
Related Software: Open Babel; VASP; XtalOpt; Avogadro; SICStus; Smodels; …
Main Fields: Mathematical logic and foundations (03-XX); Computer science (68-XX); Mechanics of deformable solids (74-XX)

Scicos

Software Authors:   INRIA
Cited in: 19 Publications (2006–2019)
Related Software: Scilab; ScicosLab; FreeFem++; Modelica; Chaos; GPOPS; …
Main Fields: Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX); Computer science (68-XX)

ESPResSo

Software Authors:   Limbach, H.-J.; Arnold, A.; Mann, B. A.; Holm, C
Cited in: 15 Publications (2008–2021)
Related Software: NAMD; Gromacs; ESPResSo++; AdResS; MMM2D; Python; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

Openpipeflow

Software Authors:   Ashley P.Willis
Cited in: 15 Publications (2017–2022)
Related Software: channelflow; OpenMPI; FFTW; nsCouette
Main Fields: Dynamical systems and ergodic theory (37-XX); Fluid mechanics (76-XX); Classical thermodynamics, heat transfer (80-XX)

Packmol

Software Authors:   Martínez, L., Andrade, R., Birgin, E.G., Martínez, J.M.
Cited in: 15 Publications (2012–2022)
Related Software: ALGENCAN; Ipopt; CUTEst; SPG; GradSamp; nanoHUB; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Convex and discrete geometry (52-XX); Numerical analysis (65-XX)

AmgX

Software Authors:   Naumov, M.; Arsaev, M.; Castonguay, P.; Cohen, J.; Demouth, J.; Eaton, J.; Layton, S.; Markovskiy, N.; Reguly, I.; Sakharnykh, N.; Sellappan, V.; Strzodka, R.
Cited in: 11 Publications (2015–2022)
Related Software: hypre; CUDA; PETSc; BoomerAMG; CUSPARSE; SparseMatrix; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

HODMD

Software Authors:   Soledad Le Clainche; José M. Vega
Cited in: 15 Publications (2018–2022)
Related Software: redbKIT; GitHub; Loewner; VAMPnets; PDE-Net; rsvd; …
Main Fields: Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX); Computer science (68-XX)

Racoon

Software Authors:   Jürgen Dreher; Rainer Grauer
Cited in: 15 Publications (2006–2020)
Related Software: PARAMESH; p4est; Peano; AMROC; Chombo; deal.ii; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

STAPL

Software Authors:   An, Ping; Jula, Alin; Rus, Silvius; Saunders, Steven; Smith, Tim; Tanase, Gabriel; Thomas, Nathan; Amato, Nancy; Rauchwerger, Lawrence
Cited in: 12 Publications (1992–2021)
Related Software: Boost; STL; PBGL; BGL; Boost C++ Libraries; Chapel; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

FODD-Planner

Software Authors:   Joshi, S.; Khardon, R.
Cited in: 13 Publications (2008–2021)
Related Software: FluCaP; Graphplan; ProbLog; GOLOG; PEORL; REBA; …
Main Fields: Mathematical logic and foundations (03-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

DESMOND

Software Authors:   D. E. Shaw Research
Cited in: 8 Publications (2010–2022)
Related Software: Gromacs; NAMD; LAMMPS; AMBER; CHARMM; CUDA; …
Main Fields: Number theory (11-XX); Numerical analysis (65-XX); Statistical mechanics, structure of matter (82-XX)

KARDOS

Software Authors:   B. Erdmann, J. Lang, R. Roitzsch, ZIB Berlin
Cited in: 14 Publications (1995–2021)
Related Software: ROS3P; RODAS; PDEX1M; Kaskade7; Algorithm 432; IFISS; …
Main Fields: Partial differential equations (35-XX); Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX)

Hemelb

Software Authors:   Mazzeo, M.D.; Coveney, P.V.
Cited in: 12 Publications (2008–2021)
Related Software: MUPHY; Palabos; LUDWIG; OpenLB; CUDA; Spalart-Allmaras; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Fluid mechanics (76-XX)

LMGC90

Software Authors:   Dubois, F.; Jean, M.; Renouf, M.; Mozul, R.; Martin, A.; Bagneris, M.
Cited in: 13 Publications (2005–2018)
Related Software: SIMEM3 Renault; Xper; PELICANS; PeliGRIFF; FEATFLOW; Chrono; …
Main Fields: Numerical analysis (65-XX); Mechanics of particles and systems (70-XX); Mechanics of deformable solids (74-XX)

Siconos

Software Authors:   Siconos development team
Cited in: 13 Publications (2010–2022)
Related Software: PATH Solver; CasADi; Ipopt; ZQPCVX; Meschach; RODAS; …
Main Fields: Numerical analysis (65-XX); Mechanics of particles and systems (70-XX); Mechanics of deformable solids (74-XX)

RedHom

Software Authors:   Juda, Mateusz; Mrozek, Marian
Cited in: 12 Publications (2012–2017)
Related Software: GAP; CAPD; CHomP; Library of Triangulations; Simplicial complex library; Perseus; …
Main Fields: Convex and discrete geometry (52-XX); Algebraic topology (55-XX); Manifolds and cell complexes (57-XX)

veDYNA

Software Authors:   Burgermeister, B.; Arnold, M.; Esterl, B.; TESIS DYNAware GmbH
Cited in: 12 Publications (2006–2022)
Related Software: RODAS; MEXX; SIMPACK; Matlab; DASSL; MATLAB ODE suite; …
Main Fields: Numerical analysis (65-XX); Mechanics of particles and systems (70-XX); Mechanics of deformable solids (74-XX)

FMI

Software Authors:   Arnold, Martin; Clauß, Christoph; Schierz, Tom
Cited in: 11 Publications (2014–2022)
Related Software: Modelica; SUNDIALS; CHOPtrey; RODAS; Adams; LSODE; …
Main Fields: Ordinary differential equations (34-XX); Numerical analysis (65-XX); Computer science (68-XX)

odmd

Software Authors:   H. Zhang; C. W. Rowley
Cited in: 11 Publications (2018–2022)
Related Software: PRMLT; GitHub; DeepONet; PyDMD; VAMPnets; rsvd; …
Main Fields: Dynamical systems and ergodic theory (37-XX); Operator theory (47-XX); Numerical analysis (65-XX)

PhysiCell

Software Authors:   Ghaffarizadeh, A.; Heiland, R.; Friedman, SH; Mumenthaler, SM; Macklin, P.
Cited in: 9 Publications (2019–2022)
Related Software: Chaste; Biocellion; CellSys; CompuCell3D; Python; Morpheus; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)

SPHinXsys

Software Authors:   Chi Zhang, Massoud Rezavand, Yujie Zhu, Yongchuan Yu, Dong Wu, Wenbin Zhang, Jianhang Wang, Xiangyu Hu
Cited in: 9 Publications (2021–2022)
Related Software: DualSPHysics; PySPH; GADGET; MAGMA; JOSEPHINE; ParaView; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

AMIGO

Software Authors:   Eva Balsa-Canto; Julio R. Banga
Cited in: 7 Publications (2015–2021)
Related Software: Data2Dynamics; PESTO; COPASI; R; pyPESTO; PEtab; …
Main Fields: Ordinary differential equations (34-XX); Numerical analysis (65-XX); Operations research, mathematical programming (90-XX)

jHoles

Software Authors:   Binchi, Jacopo; Merelli, Emanuela; Rucco, Matteo; Petri, Giovanni; Vaccarino, Francesco
Cited in: 10 Publications (2014–2022)
Related Software: javaPlex; PHAT; Perseus; Gudhi; Ripser; Dionysus; …
Main Fields: Combinatorics (05-XX); Algebraic topology (55-XX); Numerical analysis (65-XX)

JIDT

Software Authors:   Joseph T. Lizier, Ipek Özdemir, Pedro Mediano
Cited in: 6 Publications (2018–2020)
Related Software: TRENTOOL; MuTE; IDTxl; Python; NetComp; NetLSD; …
Main Fields: Dynamical systems and ergodic theory (37-XX); Statistics (62-XX); Statistical mechanics, structure of matter (82-XX)

JiTCODE

Software Authors:   Ansmann, Gerrit
Cited in: 8 Publications (2018–2022)
Related Software: JiTCSDE; JiTCDDE; Python; SciPy; PowerDynamics.jl; StochasticDelayDiffEq.jl; …
Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX)

AMESim

Software Authors:   Siemens Industry Software
Cited in: 8 Publications (2004–2018)
Related Software: Simulink; Matlab; RecurDyn; ElemStatLearn
Main Fields: Statistics (62-XX); Computer science (68-XX); Mechanics of particles and systems (70-XX)

CAPD DynSys

Software Authors:   Kapela, Tomasz; Mrozek, Marian; Wilczak, Daniel; Zgliczyński, Piotr
Cited in: 9 Publications (2021–2022)
Related Software: RODES; kv; VNODE; ValEncIA-IVP; MPFR; GitHub; …
Main Fields: Ordinary differential equations (34-XX); Partial differential equations (35-XX); Dynamical systems and ergodic theory (37-XX)

ERODE

Software Authors:   Cardelli, L., Tribastone, M., Tschaikowski, M., Vandin, A.
Cited in: 9 Publications (2017–2021)
Related Software: z3; BioNetGen; Bio-PEPA; PRISM; NFsim; Flow*; …
Main Fields: Commutative algebra (13-XX); Ordinary differential equations (34-XX); Probability theory and stochastic processes (60-XX)

JiTCSDE

Software Authors:   Ansmann, Gerrit
Cited in: 9 Publications (2018–2022)
Related Software: JiTCODE; JiTCDDE; Ode15s; Conedy; PyDSTool; Matlab; …
Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX)

LCS Tool

Software Authors:   K.Onu, F.Huhn, G.Haller
Cited in: 7 Publications (2016–2020)
Related Software: LCS MATLAB kit; FlowVC; Matlab; BarrierTool; lagrangian; Python; …
Main Fields: Dynamical systems and ergodic theory (37-XX); General topology (54-XX); Numerical analysis (65-XX)

MDAnalysis

Software Authors:   Gowers, R. J.; Linke, M.; Barnoud, J.; Reddy, T. J.E.; Melo, M. N.; Seyler, S. L.
Cited in: 1 Publication (2018)
Related Software: Python; NumPy; Gromacs; OpenMM; HOOMD-blue; SciPy; …
Main Fields: Fluid mechanics (76-XX)

MOBILE

Software Authors:   Auer, Ekaterina; Kecskeméthy, Andrés; Tändl, Martin; Traczinski, Holger
Cited in: 9 Publications (2001–2010)
Related Software: PROFIL/BIAS; SmartMobile; TADIFF; ValEncIA; Cosy; FADBAD++; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Mechanics of particles and systems (70-XX)

PANFIS

Software Authors:   Pratama, M.; Anavatti, S.G.; Angelov, P.P.; Lughofer, E.
Cited in: 9 Publications (2014–2021)
Related Software: DENFIS; ANFIS; MOA; ElemStatLearn; GSA; SparseFIS; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Statistics (62-XX); Computer science (68-XX)

Pegasus

Software Authors:   Kunz, Matthew W.; Stone, James M.; Bai, Xue-Ning
Cited in: 9 Publications (2014–2022)
Related Software: gs2; AstroGK; VORPAL; XGC0; OSIRIS; Viriato; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

POMULT

Software Authors:   S.C. Farantos
Cited in: 8 Publications (1998–2021)
Related Software: AUTO; Python; UPOsHam; RODES; Lorenz-Database; ADIFOR; …
Main Fields: Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX); Mechanics of particles and systems (70-XX)

ADAM

Software Authors:   Hinkelmann F, Brandon M, Guang B, McNeill R, Blekherman G, Veliz-Cuba A, Laubenbacher R
Cited in: 8 Publications (2011–2020)
Related Software: Ginsim; Macaulay2; BoolNet; SNOOPY; Polynome; CANA; …
Main Fields: Algebraic geometry (14-XX); Linear and multilinear algebra; matrix theory (15-XX); Biology and other natural sciences (92-XX)

CP2K

Software Authors:   https://sourceforge.net/p/cp2k/_members/; Hutter J., Iannuzzi M., Schiffmann F., VandeVondele J.
Cited in: 4 Publications (2016–2020)
Related Software: Quantum Espresso; AdResS; TensorFlow; GAUSSIAN; ASE; Python; …
Main Fields: Probability theory and stochastic processes (60-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

JiTCDDE

Software Authors:   Ansmann, Gerrit
Cited in: 8 Publications (2018–2022)
Related Software: JiTCSDE; JiTCODE; Ode15s; Conedy; PyDSTool; Matlab; …
Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX)

pyunicorn

Software Authors:   Jonathan F. Donges, Jobst Heitzig, Boyan Beronov, Marc Wiedermann, Jakob Runge, Qing Yi Feng, Liubov Tupikina, Veronika Stolbova, Reik V. Donner, Norbert Marwan, Henk A. Dijkstra, J. Kurths
Cited in: 6 Publications (2015–2021)
Related Software: SciPy; TISEAN; igraph; Python; NetworkX; NumPy; …
Main Fields: Combinatorics (05-XX); Dynamical systems and ergodic theory (37-XX); Statistics (62-XX)

SGN Sim

Software Authors:   Ribeiro AS, Lloyd-Price J
Cited in: 7 Publications (2009–2019)
Related Software: RegulonDB; GeneNetWeaver; Path2Models; SOSlib; LASSIE; BioPreDyn-bench; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

SPeeDI

Software Authors:   Asarin, Eugene; Pace, Gordon; Schneider, Gerardo; Yovine, Sergio
Cited in: 7 Publications (2002–2017)
Related Software: GSPeeDI; HyTech; ParaPlan; dReach; Flow*; KeYmaera; …
Main Fields: Ordinary differential equations (34-XX); Computer science (68-XX); Systems theory; control (93-XX)

sssMOR

Software Authors:   A. Castagnotto, M. Cruz Varona, L. Jeschek, B. Lohmann
Cited in: 8 Publications (2017–2022)
Related Software: MESS; Matlab; benchmodred; LYAPACK; UMFPACK; MORPACK; …
Main Fields: Ordinary differential equations (34-XX); Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX)

WavePacket

Software Authors:   Burkhard Schmidt, Ulf Lorenz, Carsten Hartmann
Cited in: 4 Publications (2009–2020)
Related Software: QuTiP; Matlab; MCTDH; QEngine; Nevergrad; NLopt; …
Main Fields: Partial differential equations (35-XX); Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX)

ACEMD

Software Authors:   Harvey M., Giupponi G., De Fabritiis G.
Cited in: 3 Publications (2011–2016)
Related Software: CUDA; NAMD; AMBER; CHARMM; Gromacs; MUPHY; …
Main Fields: Numerical analysis (65-XX); Fluid mechanics (76-XX); Statistical mechanics, structure of matter (82-XX)

IMD

Software Authors:   Jörg Stadler, Erik Bitzek, Peter Brommer, Franz Gähler, Christopher Kohler, Frank Pister, Johannes Roth, Steffen Sonntag
Cited in: 6 Publications (2000–2016)
Related Software: LAMMPS; ACEMD; OpenMM; PuReMD; CHARMM; Gromacs; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Quantum theory (81-XX)

MBDyn

Software Authors:   M. Fancello, P. Masarati, M. Morandini, V. Muscarello, G. Quaranta
Cited in: 6 Publications (2007–2022)
Related Software: OpenSeesPy; preCICE; Vega; GitHub; CMake; Doxygen; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Mechanics of particles and systems (70-XX)

MuTE

Software Authors:   Montalto A, Faes L, Marinazzo D
Cited in: 4 Publications (2016–2021)
Related Software: TRENTOOL; JIDT; MVGC; IDTxl; R; FieldTrip; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

OCTBEC

Software Authors:   U. Hohenester
Cited in: 6 Publications (2014–2017)
Related Software: GSGPEs; Gross-Pitaevskii; imagetime1d; GPELab; GP-SCL; AEDU; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Quantum theory (81-XX)

DL_POLY_3

Software Authors:   Todorov, I.T.; Smith, W.
Cited in: 5 Publications (2004–2020)
Related Software: DL_POLY; DL_MONTE; NumPy; SciPy; Jupyter; MDAnalysis; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Optics, electromagnetic theory (78-XX)

DPIV/T

Software Authors:   Ma, X.; Karniadakis, G.E.; Park, H.; Gharib, M.
Cited in: 6 Publications (2002–2015)
Related Software: DPIV; LEWICE
Main Fields: Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX); Classical thermodynamics, heat transfer (80-XX)

dsoa

Software Authors:   Fabien, Brian C.
Cited in: 6 Publications (2010–2017)
Related Software: SOCS; qpOASES; OOQP; PROPT; ACADO; ROS3P; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX); Operations research, mathematical programming (90-XX)

DynamO

Software Authors:   M. N. Bannerman, R. Sargant, L. Lue
Cited in: 5 Publications (2015–2021)
Related Software: CHARMM; AMBER; DESMOND; NAMD; Gromacs; LAMMPS
Main Fields: Numerical analysis (65-XX); Mechanics of particles and systems (70-XX); Mechanics of deformable solids (74-XX)

GOAHEAD

Software Authors:   Pahlke, K.
Cited in: 6 Publications (2008–2021)
Related Software: HOST; Ogen; CMPGRD; Athena; Spalart-Allmaras; elsA; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

HOTINT

Software Authors:   Gerstmayr, J.; Dorninger, A.; Eder, R.; Gruber, P.; Reischl, D.; Saxinger, M.; Schörgenhumer, M.; Humer, A.; Nachbagauer, K.; Pechstein, A.; Vetyukov, Y.,
Cited in: 6 Publications (2011–2021)
Related Software: CFDEM; DASPK 3.0; SUNDIALS; EasyDyn; BEAM189; ABAQUS
Main Fields: Numerical analysis (65-XX); Mechanics of particles and systems (70-XX); Mechanics of deformable solids (74-XX)

PnPMPC

Software Authors:   Riverso, S., Battocchio, A., amp; Ferrari-Trecate, G.
Cited in: 6 Publications (2014–2022)
Related Software: ALADIN; VIATOC; DISROPT; GRAMPC; pybind11; acados; …
Main Fields: Operations research, mathematical programming (90-XX); Systems theory; control (93-XX)

RECFMM

Software Authors:   Zhang, Bo; Huang, Jingfang; Pitsianis, Nikos P.; Sun, Xiaobai
Cited in: 6 Publications (2016–2020)
Related Software: DASHMM; ScalFMM; Chebfun; PAFMPB; HOT; DL_MONTE; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Numerical analysis (65-XX); Computer science (68-XX)

Slate

Software Authors:   Thomas H. Gibson, Lawrence Mitchell, David A. Ham, Colin J. Cotter
Cited in: 5 Publications (2019–2021)
Related Software: Firedrake; PETSc; TSFC; chammp; FreeFem++; PyOP2; …
Main Fields: Numerical analysis (65-XX); Fluid mechanics (76-XX); Geophysics (86-XX)

sPuReMD

Software Authors:   Aktulga, Hasan Metin; Pandit, Sagar A.; Van Duin, Adri C.T.; Grama, Ananth Y.
Cited in: 5 Publications (2012–2020)
Related Software: ReaxFF; PuReMD; CUDA; NAMD; LAMMPS; Gromacs; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Mechanics of deformable solids (74-XX)

SReachTools

Software Authors:   Vinod, Abraham P.; Gleason, Joseph D.; Oishi, Meeko M. K.
Cited in: 6 Publications (2019–2022)
Related Software: FAUST2; MPT; StocHy; ProbReach; PRISM; GitHub; …
Main Fields: Computer science (68-XX); Systems theory; control (93-XX)

TsAGI

Software Authors:   Central Aerohydrodynamic Institute
Cited in: 6 Publications (1978–2019)
Related Software: CAE Fidesys; LEGAK-DK
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

Xcompact3d

Software Authors:   Bartholomew, P.; Deskos, G.; Frantz, R.; Schuch, F.; Lamballais, E.; Laizet, S.
Cited in: 5 Publications (2021–2022)
Related Software: incompact3d; WInc3D; 2DECOMP; Energy_Spectrum
Main Fields: Numerical analysis (65-XX); Fluid mechanics (76-XX)