Bioconductor Software Authors: open development project Cited in: 211 Publications (2003–2022) Related Software: R; gcrma; edgeR; limma; KEGG; DEseq; … Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)
DEseq Software Authors: Simon Anders Cited in: 57 Publications (2011–2022) Related Software: Bioconductor; edgeR; R; BaySeq; DESeq2; QuasiSeq; … Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)
SWIFFT Software Authors: Lyubashevsky, Vadim; Micciancio, Daniele; Peikert, Chris; Rosen, Alon Cited in: 49 Publications (2008–2021) Related Software: NTRU; NTL; SWIFFTX; CUDA; BKZ; GitHub; … Main Fields: Number theory (11-XX); Numerical analysis (65-XX); Computer science (68-XX)
FAMT Software Authors: David Causeur, Chloe Friguet, Magalie Houee-Bigot, Maela Kloareg Cited in: 33 Publications (2009–2022) Related Software: leapp; R; FADA; GitHub; Eigenstrat; FarmTest; … Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)
mixOmics Software Authors: Sebastien Dejean, Ignacio Gonzalez, Kim-Anh Le Cao, Pierre Monget, Jeff Coquery, FangZou Yao, Benoit Liquet, Florian Rohart Cited in: 24 Publications (2008–2022) Related Software: R; PMA; spls; CCA; VSURF; randomForest; … Main Fields: Statistics (62-XX); Computer science (68-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)
DESeq2 Software Authors: Michael Love, Constantin Ahlmann-Eltze, Kwame Forbes, Simon Anders, Wolfgang Huber Cited in: 26 Publications (2015–2022) Related Software: Bioconductor; edgeR; R; DEseq; Voom; BaySeq; … Main Fields: Combinatorics (05-XX); Statistics (62-XX); Numerical analysis (65-XX)
iPromoter-2L Software Authors: Liu, B.; Yang, F.; Huang, D. S. Cited in: 22 Publications (2018–2019) Related Software: iRSpot-EL; iRNA-PseColl; pLoc-mAnimal; pLoc-mEuk; iDNA6mA-PseKNC; 2L-piRNA; … Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)
iDNA-Methyl Software Authors: Liu, Z.; Xiao, X.; Qiu, W. -R.; Chou, K. -C. Cited in: 19 Publications (2015–2019) Related Software: Pse-in-One; iPPI-Esml; iPro54-PseKNC; iRSpot-PseDNC; iSuc-PseOpt; PseKNC; … Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
Prnam-PC Software Authors: Liu, Z.; Xiao, X.; Yu, D. -J.; Jia, J.; Qiu, W. -R.; Chou, K. -C. Cited in: 18 Publications (2016–2019) Related Software: pSuc-Lys; iPTM-mLys; iRSpot-PseDNC; iSuc-PseOpt; 2L-piRNA; iRSpot-EL; … Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)
CellProfiler Software Authors: Anne E Carpenter, Thouis R Jones, Michael R Lamprecht, Colin Clarke, In Han Kang, Ola Friman, David A Guertin, Joo Han Chang, Robert A Lindquist, Jason Moffat, Polina Golland, David M Sabatini Cited in: 5 Publications (2018–2020) Related Software: ImageJ; ImageJ2; Fiji; ImgLib2; scikit-image; ilastik; … Main Fields: Algebraic topology (55-XX); Statistics (62-XX); Computer science (68-XX)
iRNA-3typeA Software Authors: Chen, W.; Feng, P.; Yang, H.; Ding, H.; Lin, H.; Chou, K.-C Cited in: 17 Publications (2018–2019) Related Software: iRNA-PseColl; iDNA6mA-PseKNC; pLoc-mGneg; iPromoter-2L; iRSpot-EL; pLoc-mEuk; … Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)
MEGAN Software Authors: Daniel H. Huson, Alexander F. Auch, Ji Qi, Stephan C. Schuster Cited in: 5 Publications (2010–2017) Related Software: TETRA; TACOA; BLAST; ONE; RAST; PSI-BLAST; … Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)
CryptDB Software Authors: Raluca Ada Popa, Catherine M. S. Redfield, Nickolai Zeldovich, Hari Balakrishnan Cited in: 16 Publications (2013–2021) Related Software: GitHub; Cassandra; HBase; Bigtable; Accumulo; HElib; … Main Fields: Computer science (68-XX); Information and communication theory, circuits (94-XX)
iDNA-Prot Software Authors: Liu, B., Xu, J., Lan, X., Xu, R., Zhou, J., Wang, X., Chou, K.-C. Cited in: 16 Publications (2012–2019) Related Software: AFP-Pred; iPPI-Esml; iPro54-PseKNC; Pse-in-One; pSuc-Lys; 2L-piRNA; … Main Fields: Combinatorics (05-XX); Measure and integration (28-XX); Statistics (62-XX)
DRAGON Software Authors: Mauri, Andrea; Consonni, Viviana; Pavan, Manuela; Todeschini, Roberto; Kode srl; Talete SRL Cited in: 12 Publications (2006–2019) Related Software: HyperChem; OCHEM; MOPAC; STATISTICA; PubChem PUG; KNIME; … Main Fields: History and biography (01-XX); Combinatorics (05-XX); Statistics (62-XX)
Virus-ploc Software Authors: Shen, H. -B.; Chou, K. -C. Cited in: 12 Publications (2007–2017) Related Software: Euk-PLoc; Gpos-PLoc; Hum-mPLoc; Cell-PLoc; Euk-mPLoc; Hum-PLoc; … Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
leapp Software Authors: Yunting Sun , Nancy R.Zhang, Art B.Owen Cited in: 12 Publications (2012–2022) Related Software: FAMT; Eigenstrat; DDL; CRAN; glasso; glmnet; … Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)
APNN-Toolbox Software Authors: Peter Buchholz; Markus Fischer; Peter Kemper; Carsten Tepper Cited in: 11 Publications (1999–2018) Related Software: LDQBD; PEPS; COLAMD; PEPA; StochKit; GTAEXPRESS; … Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Probability theory and stochastic processes (60-XX); Numerical analysis (65-XX)
CNV-seq Software Authors: C. Xie, M.T. Tammi Cited in: 9 Publications (2011–2019) Related Software: rSW-seq; ReadDepth; R; SQOPT; SeqBBS; PICNIC; … Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)
iDHS-EL Software Authors: Liu, B.; Long, R.; Chou, K. -C. Cited in: 10 Publications (2016–2019) Related Software: pSuc-Lys; Pse-in-One; Prnam-PC; iSuc-PseOpt; iEnhancer-2L; iPTM-mLys; … Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)
iMiRNA-PseDPC Software Authors: Liu, B.; Fang, L.; Liu, F.; Wang, X.; Chou, K. -C. Cited in: 10 Publications (2015–2019) Related Software: Pse-in-One; PseKNC; iPPI-Esml; iAMP-2L; iDNA-Methyl; iPro54-PseKNC; … Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)
GOTM Software Authors: Bing Zhang, Denise Schmoyer, Stefan Kirov; Jay Snoddy Cited in: 6 Publications (2005–2014) Related Software: FatiGO; KEGG; GOstat; DAVID; Onto-Tools; GOToolBox; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
AFLOW Software Authors: Curtarolo, S., Setyawan, W., Hart, G. L. W., Jahnatek, M., Chepulskii, R. V., Taylor, R. H., Wang, S., et al. Cited in: 4 Publications (2018–2022) Related Software: AiiDA; FireWorks; Python; Atomate; ASE; pymatgen; … Main Fields: Partial differential equations (35-XX); Statistics (62-XX); Numerical analysis (65-XX)
FastQC Software Authors: Simon Andrews Cited in: 7 Publications (2015–2021) Related Software: R; TopHat; Trimmomatic; Bioconductor; STAR; KEGG; … Main Fields: General and overarching topics; collections (00-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)
HTSeq Software Authors: Simon Anders, Paul Theodor Pyl, Wolfgang Huber Cited in: 7 Publications (2016–2018) Related Software: Bioconductor; edgeR; TopHat; STAR; R; DEseq; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
idr Software Authors: Qunhua Li Cited in: 6 Publications (2011–2022) Related Software: GMCM; word2vec; darch; Puma; R; knitr; … Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)
ipc Software Authors: Bradley, Jeremy T.; Dingle, Nicholas J.; Gilmore, Stephen T.; Knottenbelt, William J. Cited in: 8 Publications (2006–2018) Related Software: PEPA; PRISM; SPADES; Robust Control Toolbox; SSF.App.Worm Main Fields: Ordinary differential equations (34-XX); Probability theory and stochastic processes (60-XX); Computer science (68-XX)
Minfi Software Authors: Aryee MJ, Jaffe AE, Corrada-Bravo H, Ladd-Acosta C, Feinberg AP, Hansen KD, Irizarry RA Cited in: 8 Publications (2016–2022) Related Software: Bioconductor; BSmooth; MethylSig; IMA; limma; R; … Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)
Phyloseq Software Authors: Paul J. McMurdie; Susan Holmes Cited in: 5 Publications (2015–2021) Related Software: R; ggplot2; GUniFrac; shiny; vegan; multtest; … Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)
RAST Software Authors: Meyer F, Paarmann D, D’Souza M et al Cited in: 4 Publications (2012–2019) Related Software: KEGG; MEGAN; Artemis; BLAST; PROSITE; PSI-BLAST; … Main Fields: General and overarching topics; collections (00-XX); Probability theory and stochastic processes (60-XX); Computer science (68-XX)
MIMIX Software Authors: Neal S. Grantham, Brian J. Reich, Elizabeth T. Borer, Kevin Gross Cited in: 7 Publications (2019–2022) Related Software: edgeR; Bioconductor; ggplot2; R; gcrma; PoiClaClu; … Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
SHARP Software Authors: Stefano Marchesini, Hari Krishnan, Benedikt J. Daurer, David A. Shapiro, Talita Perciano, James A. Sethian, Filipe R.N.C. Maia Cited in: 6 Publications (2019–2021) Related Software: PtychoLib; PtyPy; CUDA; Regularization tools; LSQR; BlockPR Main Fields: Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX); Optics, electromagnetic theory (78-XX)
Babelomics Software Authors: Al-Shahrour, F., Minguez, P., Vaquerizas, J. M., Conde, L., Dopazo, J. Cited in: 3 Publications (2008–2010) Related Software: FatiGO; GOstat; Bioconductor; R; KEGG; BicAT; … Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)
ConsensusPathDB Software Authors: Kamburov A, Pentchev K, Galicka H et al Cited in: 4 Publications (2011–2018) Related Software: IntAct; BioGRID; igraph; gcrma; RedeR; STRINGdb; … Main Fields: Combinatorics (05-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)
hctsa Software Authors: B.D. Fulcher, N.S. Jones Cited in: 3 Publications (2021) Related Software: tsfresh; catch22; NumPy; Python; TSFEL; rocket; … Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
IMA Software Authors: Wang, D., Yan, L., Hu, Q., Sucheston, L. E., Higgins, M. J., Ambrosone, C. B., Johnson, C. S., Smiraglia, D. J., Liu, S. Cited in: 5 Publications (2014–2022) Related Software: Bioconductor; Minfi; COHCAP; MethylSig; methyAnalysis; HMM-Fisher; … Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)
Naiad Software Authors: D. G. Murray, F. McSherry, R. Isaacs, M. Isard, P. Barham, M. Abadi Cited in: 5 Publications (2017–2022) Related Software: Apache Flink; MonPoly; Vadalog; SociaLite; Flix; Pregel; … Main Fields: Computer science (68-XX)
SeqMap Software Authors: Jiang H, Wong WH Cited in: 3 Publications (2011–2015) Related Software: ClustalW; DIALIGN; ViennaRNA; RAST; TopHat; SHRiMP; … Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)
ShortRead Software Authors: Martin Morgan, Simon Anders, Michael Lawrence, Patrick Aboyoun, Hervé Pagès, Robert Gentleman Cited in: 2 Publications (2015–2021) Related Software: Bioconductor; R; ggplot2; Rsamtools; TopHat; Trimmomatic; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
sva Software Authors: Leek JT, Johnson WE, Parker HS, et al. Cited in: 5 Publications (2016–2021) Related Software: R; CRAN; systemPipeR; JASPAR; KEGG; Bioconductor; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
Bismark Software Authors: Krueger, F.; S. Andrews Cited in: 4 Publications (2016–2021) Related Software: Bowtie 2; BSMAP; BS Seeker; STAR; methylKit; Trimmomatic; … Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Computer science (68-XX)
GOSim Software Authors: Holger Fröhlich Cited in: 4 Publications (2011–2017) Related Software: TRANSFAC; Tracer; MulRF; iGTP; TOPAL; ExaBayes; … Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)
GutenTag Software Authors: Tabb, D. L., Saraf, A., Yates, J. R. Cited in: 1 Publication (2010) Related Software: TANDEM; Pinnacle; Decon2LS Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
methylKit Software Authors: Akalin, A., M. Kormaksson, S. Li, F. Garrett-Bakelman, M. Figueroa, A. Melnick, C. Mason Cited in: 5 Publications (2016–2021) Related Software: HMM-Fisher; HMM-DM; BSmooth; Bioconductor; MethylSig; MOABS; … Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)
NeMoFinder Software Authors: Chen J, Hsu M, Lee L, Ng SK Cited in: 5 Publications (2009–2020) Related Software: MODA; Kavosh; FANMOD; Graemlin; KEGG; gSpan; … Main Fields: Combinatorics (05-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
ProbCD Software Authors: Ricardo Vêncio, Ilya Shmulevich Cited in: 0 Publications Related Software: GOPET; BayGO; Gaggle; GOLEM; GOtcha; BiNGO; … Main Fields: –
svaseq Software Authors: Jeffrey T. Leek Cited in: 5 Publications (2015–2021) Related Software: Bioconductor; R; DESeq2; DEseq; LBFGS-B; L-BFGS; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
ChIPmix Software Authors: Marie-Laure Martin-Magniette, Tristan Mary-Huard, Caroline Bérard, Stéphane Robin Cited in: 4 Publications (2013–2020) Related Software: mixreg; mixtools; flexmix; R; SenSrivastava; Segmented; … Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)
CONFAC Software Authors: Suresh Karanam, Carlos S. Moreno Cited in: 1 Publication (2009) Related Software: CGHMultiArray; AS 62; ArrayExpress; JASPAR; rVISTA; AS 159 Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)
DAnTE Software Authors: Polpitiya, A. D., Qian, W. J., Jaitly, N., Petyuk, V. A., Adkins, J. N., II, D. G. C., Anderson, G. A., Smith, R. D. Cited in: 2 Publications (2013–2018) Related Software: impute; sn; NATbox; MAIA; BRLMM; Cytoscape; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
gaga Software Authors: David Rossell Cited in: 4 Publications (2009–2012) Related Software: EBarrays; boa; BayesDA; gcrma; sma; DAVID; … Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)
Gaggle Software Authors: P.T. Shannon, D.J. Reiss, R. Bonneau, N.S. Baliga Cited in: 0 Publications Related Software: GOPET; BayGO; GOLEM; GOtcha; BiNGO; ProbCD; … Main Fields: –
2HOT Software Authors: M.S. Warren Cited in: 3 Publications (2015–2019) Related Software: GADGET; ParaView; S3D Legion; Kokkos; DualSPHysics; MAGMA; … Main Fields: Numerical analysis (65-XX); Quantum theory (81-XX); Statistical mechanics, structure of matter (82-XX)
MMG Software Authors: Sanguinetti G, Noirel J, Wright PC Cited in: 1 Publication (2019) Related Software: GeneNetWeaver; Path2Models; SOSlib; LASSIE; BioPreDyn-bench; sgnesR; … Main Fields: Biology and other natural sciences (92-XX)
Snakemake Software Authors: Köster, Johannes; Rahmann, Sven Cited in: 0 Publications Related Software: Taverna; Python; ImgLib2; scikit-image; CLIJ; CellProfiler; … Main Fields: –
THetA Software Authors: Oesper, L., Mahmoody, A., Raphael, B. J. Cited in: 4 Publications (2015–2020) Related Software: PyClone; R; PhyloWGS; BayCount; PairClone; TreeClone; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
WaveSpect0 Software Authors: Chen, Shuo; Hong, Don; Shyr, Yu Cited in: 4 Publications (2007–2008) Related Software: ElemStatLearn; R; Matlab; SABoost; robustbase; CLUES Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)
CNAmet Software Authors: R. Louhimo; S. Hautaniemi Cited in: 2 Publications (2012–2015) Related Software: R; DAVID; HmmSeq; BaySeq; tmvtnorm; edgeR; … Main Fields: Statistics (62-XX)
crlmm Software Authors: Robert Scharpf; Rafael Irizarry; Matthew Ritchie; Benilton Carvalho; Ingo Ruczinski Cited in: 1 Publication (2011) Related Software: R; GenCall; GenoSNP; GenomeStudio; mclust; SNPMClust; … Main Fields: Statistics (62-XX)
GENECODIS Software Authors: Carmona-Saez P., Chagoyen M., Tirado F., Carazo J. M., Pascual-Montano A. Cited in: 3 Publications (2010–2016) Related Software: KEGG; BiNGO; STRING; WEKA; CLENCH; GFINDer; … Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)
GOSemSim Software Authors: Guangchuang Yu, Fei Li, Yide Qin, Xiaochen Bo, Yibo Wu, Shengqi Wang Cited in: 1 Publication (2016) Related Software: DOSE; R; DisSetSim; clusterProfiler; MeSHSim; DaGO-Fun; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
HTqPCR Software Authors: Dvinge H, Bertone P Cited in: 1 Publication (2018) Related Software: R; qpcR; NormqPCR; ReadqPCR; pcr; ggplot2; … Main Fields: Biology and other natural sciences (92-XX)
HubAlign Software Authors: Somaye Hashemifar; Jinbo Xu Cited in: 3 Publications (2015–2020) Related Software: IsoRank; NETAL; GHOST; SPINAL; DeepWalk; node2vec; … Main Fields: Combinatorics (05-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)
MetaboAnalyst Software Authors: Xia J, Mandal R, Sinelnikov IV, Broadhurst D, Wishart DS Cited in: 1 Publication (2018) Related Software: plotly; Highcharter; shiny; OOMPA; hgu133plus2.db; HMDB; … Main Fields: Statistics (62-XX)
miRExpress Software Authors: Wang, W.C., Lin, F.M., Chang, W.C., Lin, K.Y., Huang, H.D., Lin, N.S. Cited in: 2 Publications (2011–2012) Related Software: ARACHNE; SpliceTrap; DWE; CLIPZ; mirTools; TargetSpy; … Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)
MiRFinder Software Authors: Huang, T.H., Fan, B., Rothschild, M.F., Hu, Z.L., Li, K., Zhao, S.H. Cited in: 2 Publications (2010–2012) Related Software: MiPred; miRBase; ARACHNE; SpliceTrap; DWE; CLIPZ; … Main Fields: General and overarching topics; collections (00-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
NAST Software Authors: T. Z. DeSantis, Jr., P. Hugenholtz, K. Keller, E. L. Brodie, N. Larsen, Y. M. Piceno, R. Phan, G. L. Andersen Cited in: 2 Publications (2013–2015) Related Software: iGTP; MrBayes; Gegenees; POY; MLTreeMap; SEPP; … Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)
Oases Software Authors: Marcel H. Schulz, Daniel R. Zerbino, Martin Vingron, Ewan Birney Cited in: 3 Publications (2015–2017) Related Software: SOAPdenovo; MetAMOS; Fiona; SPAdes; BLAT; Quake; … Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Computer science (68-XX)
ProDiGe Software Authors: Fantine Mordelet; Jean-Philippe Vert Cited in: 3 Publications (2014–2020) Related Software: Aleph; PRMLT; Medlda; EnsembleSVM; LIBLINEAR; LIBSVM Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Computer science (68-XX)
ACUA Software Authors: Vetrivel, U.; Arunkumar, V.; Dorairaj, S. Cited in: 2 Publications (2015–2020) Related Software: CodonTest; ALF; xREI; RevTrans; MACSE; EasyCodeML; … Main Fields: Biology and other natural sciences (92-XX)
Alakazam Software Authors: Gupta N, Van der Heiden J, Uduman M, Gadala-Maria D, Yaari G, Kleinstein S Cited in: 2 Publications (2019–2020) Related Software: Change-O; repgenHMM; OLGA; Ace; DeepTCR; SoDA2; … Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)
BEDOPS Software Authors: Shane Neph, Alex P. Reynolds, M. Scott Kuehn, John A. Stamatoyannopoulos Cited in: 2 Publications (2016–2022) Related Software: Scala; Galaxy; ROAST; featureCounts; Rsubread; recount; … Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
BioImageXD Software Authors: Kankaanpää, P., Paavolainen, L., Tiitta, S., Karjalainen, M., Päivärinne, J., Nieminen, J., Marjomäki, V., Heino, J., White, D.J. Cited in: 2 Publications (2012–2016) Related Software: MeVisLab; VirtualGL; Open Inventor; VizServer; N4itk; dcm4che; … Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX); Information and communication theory, circuits (94-XX)
CASTREAM Software Authors: Das, Sourav; Roychowdhury, Dipanwita Cited in: 1 Publication (2014) Related Software: – Main Fields: Computer science (68-XX)
CellMiner Software Authors: Reinhold WC, Sunshine M, Liu H, Varma S, Kohn KW, Morris J, Doroshow J, Pommier Y Cited in: 1 Publication (2016) Related Software: R; enetLTS; pense; robustHD; Galaxy; ROAST; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
Centrifuge Software Authors: Daehwan Kim, Li Song, Florian P Breitwieser, Steven L Salzberg Cited in: 2 Publications (2022) Related Software: metaFlye; AMBER; MaxBin; MetaBAT; oblr; Minimap2; … Main Fields: Biology and other natural sciences (92-XX)
Change-O Software Authors: Namita T. Gupta; Jason A. Vander Heiden; Mohamed Uduman; Daniel Gadala-Maria; Gur Yaari; Steven H. Kleinstein Cited in: 2 Publications (2019–2020) Related Software: Alakazam; repgenHMM; OLGA; Ace; DeepTCR; SoDA2; … Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)
CoreSNP Software Authors: Guzzi, Pietro Hiram; Agapito, Giuseppe; Cannataro, Mario Cited in: 2 Publications (2014–2019) Related Software: Cloud4SNP; MapReduce Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)
coseq Software Authors: Andrea Rau, Cathy Maugis-Rabusseau, Antoine Godichon-Baggioni Cited in: 2 Publications (2019–2022) Related Software: capushe; clusfind; recount; CAPUSHE; FunCC; fda (R) Main Fields: Statistics (62-XX); Computer science (68-XX)
DMAP Software Authors: Stockwell, P. A., A. Chatterjee, E. J. Rodger. I. M. Morison Cited in: 2 Publications (2016) Related Software: MethylSig; HMM-Fisher; COHCAP; SAAP-RRBS; MOABS; HMM-DM; … Main Fields: Probability theory and stochastic processes (60-XX); Biology and other natural sciences (92-XX)
DOSE Software Authors: Yu G, Wang L, Yan G, He Q Cited in: 1 Publication (2016) Related Software: GOSemSim; DisSetSim; clusterProfiler; MeSHSim; DaGO-Fun; DOSim; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
GBSA Software Authors: Benoukraf, T.; Wongphayak, S.; Hadi, L. H.; Wu, M.; Soong, R. Cited in: 2 Publications (2016–2022) Related Software: MethylSig; BSmooth; Minfi; fda (R); Bioconductor; Matlab Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
GeneNetwork Software Authors: Chia-Chin Wu, Hsuan-Cheng Huang, Hsueh-Fen Juan, Shui-Tein Chen Cited in: 1 Publication (2014) Related Software: DAVID; BNT Main Fields: Biology and other natural sciences (92-XX)
GENEVESTIGATOR Software Authors: Zimmermann, P., Hirsch-Hoffmann, M., Hennig, L., Gruissem, W. Cited in: 1 Publication (2011) Related Software: TAHMMAnnot; mclust; NTAP; TileMap; EUGENE; R; … Main Fields: Probability theory and stochastic processes (60-XX); Biology and other natural sciences (92-XX)
HTSanalyzeR Software Authors: Xin Wang, Camille Terfve, John C. Rose, Florian Markowetz Cited in: 1 Publication (2022) Related Software: Dendrix; ModuleDiscoverer; SigMod; DOMINO; NetSig; DIAMOnD; … Main Fields: Biology and other natural sciences (92-XX)
httk Software Authors: John Wambaugh, Robert Pearce, Caroline Ring, Jimena Davis, Nisha Sipes, R. Woodrow Setzer Cited in: 0 Publications Related Software: MCSim; deSolve; R; pksensi; SAFE Toolbox; SALib; … Main Fields: –
iBitter-SCM Software Authors: P. Charoenkwan, Janchai Yana, N. Schaduangrat, C. Nantasenamat, M. Hasan, W. Shoombuatong Cited in: 2 Publications (2021) Related Software: Bastion3; mAHTPred; hCKSAAP_UbSite; WEKA; UCI-ml; iBLP; … Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)
ITPN-perfbound Software Authors: Pacini Naumovich, Elina; Bernardi, Simona; Gribaudo, Marco Cited in: 1 Publication (2021) Related Software: – Main Fields: Operations research, mathematical programming (90-XX); Systems theory; control (93-XX)
JProGO Software Authors: Maurice Scheer, Frank Klawonn, Richard Münch, Andreas Grote, Karsten Hiller, Claudia Choi, Ina Koch, Max Schobert, Elisabeth Härtig, Ulrich Klages, Dieter Jahn Cited in: 1 Publication (2011) Related Software: MrBayes; MAVisto; ViennaRNA; tYNA; PhyNav; KnotSeeker; … Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)
Lep-MAP Software Authors: Rastas P, Paulin L, Hanski I, Lehtonen R, Auvinen P Cited in: 0 Publications Related Software: R; JoinMap; ICIMapping; onemap; MAPMAKER; qtl; … Main Fields: –
MetNet Software Authors: Wurtele E, Li J, Diao L, Zhang H, Foster C, Fatland B, Dickerson J, Brown A, Cox Z, Cook D, Lee E, Hofmann H Cited in: 0 Publications Related Software: Cytoscape; Bioconductor; R; rattle; iSPlot; GTK+; … Main Fields: –
MULTICOM Software Authors: Zheng Wang; Jesse Eickholt; Jianlin Cheng Cited in: 1 Publication (2014) Related Software: FT-COMAR; AAindex; BLAST; PSI-BLAST; I-TASSER; NNcon; … Main Fields: Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)
MuPlex Software Authors: Rachlin, J.; Ding, C.; Cantor, C.; Kasif, S. Cited in: 1 Publication (2019) Related Software: R Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)
P3S Software Authors: Partha Pal; Greg Lauer; Joud Khoury; Nick Hoff; Joe Loyall Cited in: 1 Publication (2018) Related Software: Cassandra; HBase; SNOBOL; GraphBLAS; moleculaRnetworks; GeneRank; … Main Fields: Computer science (68-XX)
PFAST Software Authors: Irani, S.A.; Zhang, H.; Zhou, J.; Huang, H.; Udai, T.K.; Subramanian, S. Cited in: 2 Publications (2000–2005) Related Software: – Main Fields: Operations research, mathematical programming (90-XX)
PLNseq Software Authors: Zhang, H.; Xu, J.; Jiang, N.; Hu, X.; Luo, Z. Cited in: 2 Publications (2020–2022) Related Software: R; igraph; BDgraph; HeteroGGM; BLGGM; maSigPro; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
pRESTO Software Authors: Vander Heiden JA, Yaari G, Uduman M et al Cited in: 2 Publications (2017–2020) Related Software: SoDA2; repgenHMM; OLGA; Alakazam; Change-O; Ace; … Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)
PyARPES Software Authors: Stansbury, C.; Lanzara, A. Cited in: 0 Publications Related Software: NumPy; Python; LMFIT; ASE; pymatgen; xarray; … Main Fields: –
QuartetS Software Authors: Yu, C.; Zavaljevski, N.; Desai, V.; Reifman, J. Cited in: 2 Publications (2019–2020) Related Software: OMA; OrthoGNC; Proteinortho Main Fields: Combinatorics (05-XX); Biology and other natural sciences (92-XX)
QuPath Software Authors: P. Bankhead et al . Cited in: 1 Publication (2020) Related Software: PanNuke; HoVer-Net; HACT-Net; Grad-CAM; DGL; GNNExplainer; … Main Fields: Computer science (68-XX)