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Found 201 Software Packages (Results 1–100)

Bioconductor

Software Authors:   open development project
Cited in: 211 Publications (2003–2022)
Related Software: R; gcrma; edgeR; limma; KEGG; DEseq; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

DEseq

Software Authors:   Simon Anders
Cited in: 57 Publications (2011–2022)
Related Software: Bioconductor; edgeR; R; BaySeq; DESeq2; QuasiSeq; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

SWIFFT

Software Authors:   Lyubashevsky, Vadim; Micciancio, Daniele; Peikert, Chris; Rosen, Alon
Cited in: 49 Publications (2008–2021)
Related Software: NTRU; NTL; SWIFFTX; CUDA; BKZ; GitHub; …
Main Fields: Number theory (11-XX); Numerical analysis (65-XX); Computer science (68-XX)

FAMT

Software Authors:   David Causeur, Chloe Friguet, Magalie Houee-Bigot, Maela Kloareg
Cited in: 33 Publications (2009–2022)
Related Software: leapp; R; FADA; GitHub; Eigenstrat; FarmTest; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

mixOmics

Software Authors:   Sebastien Dejean, Ignacio Gonzalez, Kim-Anh Le Cao, Pierre Monget, Jeff Coquery, FangZou Yao, Benoit Liquet, Florian Rohart
Cited in: 24 Publications (2008–2022)
Related Software: R; PMA; spls; CCA; VSURF; randomForest; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

DESeq2

Software Authors:   Michael Love, Constantin Ahlmann-Eltze, Kwame Forbes, Simon Anders, Wolfgang Huber
Cited in: 26 Publications (2015–2022)
Related Software: Bioconductor; edgeR; R; DEseq; Voom; BaySeq; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Numerical analysis (65-XX)

iPromoter-2L

Software Authors:   Liu, B.; Yang, F.; Huang, D. S.
Cited in: 22 Publications (2018–2019)
Related Software: iRSpot-EL; iRNA-PseColl; pLoc-mAnimal; pLoc-mEuk; iDNA6mA-PseKNC; 2L-piRNA; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

iDNA-Methyl

Software Authors:   Liu, Z.; Xiao, X.; Qiu, W. -R.; Chou, K. -C.
Cited in: 19 Publications (2015–2019)
Related Software: Pse-in-One; iPPI-Esml; iPro54-PseKNC; iRSpot-PseDNC; iSuc-PseOpt; PseKNC; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

Prnam-PC

Software Authors:   Liu, Z.; Xiao, X.; Yu, D. -J.; Jia, J.; Qiu, W. -R.; Chou, K. -C.
Cited in: 18 Publications (2016–2019)
Related Software: pSuc-Lys; iPTM-mLys; iRSpot-PseDNC; iSuc-PseOpt; 2L-piRNA; iRSpot-EL; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

CellProfiler

Software Authors:   Anne E Carpenter, Thouis R Jones, Michael R Lamprecht, Colin Clarke, In Han Kang, Ola Friman, David A Guertin, Joo Han Chang, Robert A Lindquist, Jason Moffat, Polina Golland, David M Sabatini
Cited in: 5 Publications (2018–2020)
Related Software: ImageJ; ImageJ2; Fiji; ImgLib2; scikit-image; ilastik; …
Main Fields: Algebraic topology (55-XX); Statistics (62-XX); Computer science (68-XX)

iRNA-3typeA

Software Authors:   Chen, W.; Feng, P.; Yang, H.; Ding, H.; Lin, H.; Chou, K.-C
Cited in: 17 Publications (2018–2019)
Related Software: iRNA-PseColl; iDNA6mA-PseKNC; pLoc-mGneg; iPromoter-2L; iRSpot-EL; pLoc-mEuk; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

MEGAN

Software Authors:   Daniel H. Huson, Alexander F. Auch, Ji Qi, Stephan C. Schuster
Cited in: 5 Publications (2010–2017)
Related Software: TETRA; TACOA; BLAST; ONE; RAST; PSI-BLAST; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

CryptDB

Software Authors:   Raluca Ada Popa, Catherine M. S. Redfield, Nickolai Zeldovich, Hari Balakrishnan
Cited in: 16 Publications (2013–2021)
Related Software: GitHub; Cassandra; HBase; Bigtable; Accumulo; HElib; …
Main Fields: Computer science (68-XX); Information and communication theory, circuits (94-XX)

iDNA-Prot

Software Authors:   Liu, B., Xu, J., Lan, X., Xu, R., Zhou, J., Wang, X., Chou, K.-C.
Cited in: 16 Publications (2012–2019)
Related Software: AFP-Pred; iPPI-Esml; iPro54-PseKNC; Pse-in-One; pSuc-Lys; 2L-piRNA; …
Main Fields: Combinatorics (05-XX); Measure and integration (28-XX); Statistics (62-XX)

DRAGON

Software Authors:   Mauri, Andrea; Consonni, Viviana; Pavan, Manuela; Todeschini, Roberto; Kode srl; Talete SRL
Cited in: 12 Publications (2006–2019)
Related Software: HyperChem; OCHEM; MOPAC; STATISTICA; PubChem PUG; KNIME; …
Main Fields: History and biography (01-XX); Combinatorics (05-XX); Statistics (62-XX)

Virus-ploc

Software Authors:   Shen, H. -B.; Chou, K. -C.
Cited in: 12 Publications (2007–2017)
Related Software: Euk-PLoc; Gpos-PLoc; Hum-mPLoc; Cell-PLoc; Euk-mPLoc; Hum-PLoc; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

leapp

Software Authors:   Yunting Sun , Nancy R.Zhang, Art B.Owen
Cited in: 12 Publications (2012–2022)
Related Software: FAMT; Eigenstrat; DDL; CRAN; glasso; glmnet; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

APNN-Toolbox

Software Authors:   Peter Buchholz; Markus Fischer; Peter Kemper; Carsten Tepper
Cited in: 11 Publications (1999–2018)
Related Software: LDQBD; PEPS; COLAMD; PEPA; StochKit; GTAEXPRESS; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Probability theory and stochastic processes (60-XX); Numerical analysis (65-XX)

CNV-seq

Software Authors:   C. Xie, M.T. Tammi
Cited in: 9 Publications (2011–2019)
Related Software: rSW-seq; ReadDepth; R; SQOPT; SeqBBS; PICNIC; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

iDHS-EL

Software Authors:   Liu, B.; Long, R.; Chou, K. -C.
Cited in: 10 Publications (2016–2019)
Related Software: pSuc-Lys; Pse-in-One; Prnam-PC; iSuc-PseOpt; iEnhancer-2L; iPTM-mLys; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

iMiRNA-PseDPC

Software Authors:   Liu, B.; Fang, L.; Liu, F.; Wang, X.; Chou, K. -C.
Cited in: 10 Publications (2015–2019)
Related Software: Pse-in-One; PseKNC; iPPI-Esml; iAMP-2L; iDNA-Methyl; iPro54-PseKNC; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

GOTM

Software Authors:   Bing Zhang, Denise Schmoyer, Stefan Kirov; Jay Snoddy
Cited in: 6 Publications (2005–2014)
Related Software: FatiGO; KEGG; GOstat; DAVID; Onto-Tools; GOToolBox; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

AFLOW

Software Authors:   Curtarolo, S., Setyawan, W., Hart, G. L. W., Jahnatek, M., Chepulskii, R. V., Taylor, R. H., Wang, S., et al.
Cited in: 4 Publications (2018–2022)
Related Software: AiiDA; FireWorks; Python; Atomate; ASE; pymatgen; …
Main Fields: Partial differential equations (35-XX); Statistics (62-XX); Numerical analysis (65-XX)

FastQC

Software Authors:   Simon Andrews
Cited in: 7 Publications (2015–2021)
Related Software: R; TopHat; Trimmomatic; Bioconductor; STAR; KEGG; …
Main Fields: General and overarching topics; collections (00-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

HTSeq

Software Authors:   Simon Anders, Paul Theodor Pyl, Wolfgang Huber
Cited in: 7 Publications (2016–2018)
Related Software: Bioconductor; edgeR; TopHat; STAR; R; DEseq; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

idr

Software Authors:   Qunhua Li
Cited in: 6 Publications (2011–2022)
Related Software: GMCM; word2vec; darch; Puma; R; knitr; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

ipc

Software Authors:   Bradley, Jeremy T.; Dingle, Nicholas J.; Gilmore, Stephen T.; Knottenbelt, William J.
Cited in: 8 Publications (2006–2018)
Related Software: PEPA; PRISM; SPADES; Robust Control Toolbox; SSF.App.Worm
Main Fields: Ordinary differential equations (34-XX); Probability theory and stochastic processes (60-XX); Computer science (68-XX)

Minfi

Software Authors:   Aryee MJ, Jaffe AE, Corrada-Bravo H, Ladd-Acosta C, Feinberg AP, Hansen KD, Irizarry RA
Cited in: 8 Publications (2016–2022)
Related Software: Bioconductor; BSmooth; MethylSig; IMA; limma; R; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

Phyloseq

Software Authors:   Paul J. McMurdie; Susan Holmes
Cited in: 5 Publications (2015–2021)
Related Software: R; ggplot2; GUniFrac; shiny; vegan; multtest; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)

RAST

Software Authors:   Meyer F, Paarmann D, D’Souza M et al
Cited in: 4 Publications (2012–2019)
Related Software: KEGG; MEGAN; Artemis; BLAST; PROSITE; PSI-BLAST; …
Main Fields: General and overarching topics; collections (00-XX); Probability theory and stochastic processes (60-XX); Computer science (68-XX)

MIMIX

Software Authors:   Neal S. Grantham, Brian J. Reich, Elizabeth T. Borer, Kevin Gross
Cited in: 7 Publications (2019–2022)
Related Software: edgeR; Bioconductor; ggplot2; R; gcrma; PoiClaClu; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

SHARP

Software Authors:   Stefano Marchesini, Hari Krishnan, Benedikt J. Daurer, David A. Shapiro, Talita Perciano, James A. Sethian, Filipe R.N.C. Maia
Cited in: 6 Publications (2019–2021)
Related Software: PtychoLib; PtyPy; CUDA; Regularization tools; LSQR; BlockPR
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX); Optics, electromagnetic theory (78-XX)

Babelomics

Software Authors:   Al-Shahrour, F., Minguez, P., Vaquerizas, J. M., Conde, L., Dopazo, J.
Cited in: 3 Publications (2008–2010)
Related Software: FatiGO; GOstat; Bioconductor; R; KEGG; BicAT; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)

ConsensusPathDB

Software Authors:   Kamburov A, Pentchev K, Galicka H et al
Cited in: 4 Publications (2011–2018)
Related Software: IntAct; BioGRID; igraph; gcrma; RedeR; STRINGdb; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

hctsa

Software Authors:   B.D. Fulcher, N.S. Jones
Cited in: 3 Publications (2021)
Related Software: tsfresh; catch22; NumPy; Python; TSFEL; rocket; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

IMA

Software Authors:   Wang, D., Yan, L., Hu, Q., Sucheston, L. E., Higgins, M. J., Ambrosone, C. B., Johnson, C. S., Smiraglia, D. J., Liu, S.
Cited in: 5 Publications (2014–2022)
Related Software: Bioconductor; Minfi; COHCAP; MethylSig; methyAnalysis; HMM-Fisher; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

Naiad

Software Authors:   D. G. Murray, F. McSherry, R. Isaacs, M. Isard, P. Barham, M. Abadi
Cited in: 5 Publications (2017–2022)
Related Software: Apache Flink; MonPoly; Vadalog; SociaLite; Flix; Pregel; …
Main Fields: Computer science (68-XX)

SeqMap

Software Authors:   Jiang H, Wong WH
Cited in: 3 Publications (2011–2015)
Related Software: ClustalW; DIALIGN; ViennaRNA; RAST; TopHat; SHRiMP; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)

ShortRead

Software Authors:   Martin Morgan, Simon Anders, Michael Lawrence, Patrick Aboyoun, Hervé Pagès, Robert Gentleman
Cited in: 2 Publications (2015–2021)
Related Software: Bioconductor; R; ggplot2; Rsamtools; TopHat; Trimmomatic; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

sva

Software Authors:   Leek JT, Johnson WE, Parker HS, et al.
Cited in: 5 Publications (2016–2021)
Related Software: R; CRAN; systemPipeR; JASPAR; KEGG; Bioconductor; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

Bismark

Software Authors:   Krueger, F.; S. Andrews
Cited in: 4 Publications (2016–2021)
Related Software: Bowtie 2; BSMAP; BS Seeker; STAR; methylKit; Trimmomatic; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Computer science (68-XX)

GOSim

Software Authors:   Holger Fröhlich
Cited in: 4 Publications (2011–2017)
Related Software: TRANSFAC; Tracer; MulRF; iGTP; TOPAL; ExaBayes; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)

GutenTag

Software Authors:   Tabb, D. L., Saraf, A., Yates, J. R.
Cited in: 1 Publication (2010)
Related Software: TANDEM; Pinnacle; Decon2LS
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

methylKit

Software Authors:   Akalin, A., M. Kormaksson, S. Li, F. Garrett-Bakelman, M. Figueroa, A. Melnick, C. Mason
Cited in: 5 Publications (2016–2021)
Related Software: HMM-Fisher; HMM-DM; BSmooth; Bioconductor; MethylSig; MOABS; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

NeMoFinder

Software Authors:   Chen J, Hsu M, Lee L, Ng SK
Cited in: 5 Publications (2009–2020)
Related Software: MODA; Kavosh; FANMOD; Graemlin; KEGG; gSpan; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

ProbCD

Software Authors:   Ricardo Vêncio, Ilya Shmulevich
Cited in: 0 Publications
Related Software: GOPET; BayGO; Gaggle; GOLEM; GOtcha; BiNGO; …
Main Fields:

svaseq

Software Authors:   Jeffrey T. Leek
Cited in: 5 Publications (2015–2021)
Related Software: Bioconductor; R; DESeq2; DEseq; LBFGS-B; L-BFGS; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

ChIPmix

Software Authors:   Marie-Laure Martin-Magniette, Tristan Mary-Huard, Caroline Bérard, Stéphane Robin
Cited in: 4 Publications (2013–2020)
Related Software: mixreg; mixtools; flexmix; R; SenSrivastava; Segmented; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

CONFAC

Software Authors:   Suresh Karanam, Carlos S. Moreno
Cited in: 1 Publication (2009)
Related Software: CGHMultiArray; AS 62; ArrayExpress; JASPAR; rVISTA; AS 159
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

DAnTE

Software Authors:   Polpitiya, A. D., Qian, W. J., Jaitly, N., Petyuk, V. A., Adkins, J. N., II, D. G. C., Anderson, G. A., Smith, R. D.
Cited in: 2 Publications (2013–2018)
Related Software: impute; sn; NATbox; MAIA; BRLMM; Cytoscape; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

gaga

Software Authors:   David Rossell
Cited in: 4 Publications (2009–2012)
Related Software: EBarrays; boa; BayesDA; gcrma; sma; DAVID; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

Gaggle

Software Authors:   P.T. Shannon, D.J. Reiss, R. Bonneau, N.S. Baliga
Cited in: 0 Publications
Related Software: GOPET; BayGO; GOLEM; GOtcha; BiNGO; ProbCD; …
Main Fields:

2HOT

Software Authors:   M.S. Warren
Cited in: 3 Publications (2015–2019)
Related Software: GADGET; ParaView; S3D Legion; Kokkos; DualSPHysics; MAGMA; …
Main Fields: Numerical analysis (65-XX); Quantum theory (81-XX); Statistical mechanics, structure of matter (82-XX)

MMG

Software Authors:   Sanguinetti G, Noirel J, Wright PC
Cited in: 1 Publication (2019)
Related Software: GeneNetWeaver; Path2Models; SOSlib; LASSIE; BioPreDyn-bench; sgnesR; …
Main Fields: Biology and other natural sciences (92-XX)

Snakemake

Software Authors:   Köster, Johannes; Rahmann, Sven
Cited in: 0 Publications
Related Software: Taverna; Python; ImgLib2; scikit-image; CLIJ; CellProfiler; …
Main Fields:

THetA

Software Authors:   Oesper, L., Mahmoody, A., Raphael, B. J.
Cited in: 4 Publications (2015–2020)
Related Software: PyClone; R; PhyloWGS; BayCount; PairClone; TreeClone; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

WaveSpect0

Software Authors:   Chen, Shuo; Hong, Don; Shyr, Yu
Cited in: 4 Publications (2007–2008)
Related Software: ElemStatLearn; R; Matlab; SABoost; robustbase; CLUES
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

CNAmet

Software Authors:   R. Louhimo; S. Hautaniemi
Cited in: 2 Publications (2012–2015)
Related Software: R; DAVID; HmmSeq; BaySeq; tmvtnorm; edgeR; …
Main Fields: Statistics (62-XX)

crlmm

Software Authors:   Robert Scharpf; Rafael Irizarry; Matthew Ritchie; Benilton Carvalho; Ingo Ruczinski
Cited in: 1 Publication (2011)
Related Software: R; GenCall; GenoSNP; GenomeStudio; mclust; SNPMClust; …
Main Fields: Statistics (62-XX)

GENECODIS

Software Authors:   Carmona-Saez P., Chagoyen M., Tirado F., Carazo J. M., Pascual-Montano A.
Cited in: 3 Publications (2010–2016)
Related Software: KEGG; BiNGO; STRING; WEKA; CLENCH; GFINDer; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)

GOSemSim

Software Authors:   Guangchuang Yu, Fei Li, Yide Qin, Xiaochen Bo, Yibo Wu, Shengqi Wang
Cited in: 1 Publication (2016)
Related Software: DOSE; R; DisSetSim; clusterProfiler; MeSHSim; DaGO-Fun; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

HTqPCR

Software Authors:   Dvinge H, Bertone P
Cited in: 1 Publication (2018)
Related Software: R; qpcR; NormqPCR; ReadqPCR; pcr; ggplot2; …
Main Fields: Biology and other natural sciences (92-XX)

HubAlign

Software Authors:   Somaye Hashemifar; Jinbo Xu
Cited in: 3 Publications (2015–2020)
Related Software: IsoRank; NETAL; GHOST; SPINAL; DeepWalk; node2vec; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

MetaboAnalyst

Software Authors:   Xia J, Mandal R, Sinelnikov IV, Broadhurst D, Wishart DS
Cited in: 1 Publication (2018)
Related Software: plotly; Highcharter; shiny; OOMPA; hgu133plus2.db; HMDB; …
Main Fields: Statistics (62-XX)

miRExpress

Software Authors:   Wang, W.C., Lin, F.M., Chang, W.C., Lin, K.Y., Huang, H.D., Lin, N.S.
Cited in: 2 Publications (2011–2012)
Related Software: ARACHNE; SpliceTrap; DWE; CLIPZ; mirTools; TargetSpy; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

MiRFinder

Software Authors:   Huang, T.H., Fan, B., Rothschild, M.F., Hu, Z.L., Li, K., Zhao, S.H.
Cited in: 2 Publications (2010–2012)
Related Software: MiPred; miRBase; ARACHNE; SpliceTrap; DWE; CLIPZ; …
Main Fields: General and overarching topics; collections (00-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

NAST

Software Authors:   T. Z. DeSantis, Jr., P. Hugenholtz, K. Keller, E. L. Brodie, N. Larsen, Y. M. Piceno, R. Phan, G. L. Andersen
Cited in: 2 Publications (2013–2015)
Related Software: iGTP; MrBayes; Gegenees; POY; MLTreeMap; SEPP; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

Oases

Software Authors:   Marcel H. Schulz, Daniel R. Zerbino, Martin Vingron, Ewan Birney
Cited in: 3 Publications (2015–2017)
Related Software: SOAPdenovo; MetAMOS; Fiona; SPAdes; BLAT; Quake; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Computer science (68-XX)

ProDiGe

Software Authors:   Fantine Mordelet; Jean-Philippe Vert
Cited in: 3 Publications (2014–2020)
Related Software: Aleph; PRMLT; Medlda; EnsembleSVM; LIBLINEAR; LIBSVM
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Computer science (68-XX)

ACUA

Software Authors:   Vetrivel, U.; Arunkumar, V.; Dorairaj, S.
Cited in: 2 Publications (2015–2020)
Related Software: CodonTest; ALF; xREI; RevTrans; MACSE; EasyCodeML; …
Main Fields: Biology and other natural sciences (92-XX)

Alakazam

Software Authors:   Gupta N, Van der Heiden J, Uduman M, Gadala-Maria D, Yaari G, Kleinstein S
Cited in: 2 Publications (2019–2020)
Related Software: Change-O; repgenHMM; OLGA; Ace; DeepTCR; SoDA2; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)

BEDOPS

Software Authors:   Shane Neph, Alex P. Reynolds, M. Scott Kuehn, John A. Stamatoyannopoulos
Cited in: 2 Publications (2016–2022)
Related Software: Scala; Galaxy; ROAST; featureCounts; Rsubread; recount; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

BioImageXD

Software Authors:   Kankaanpää, P., Paavolainen, L., Tiitta, S., Karjalainen, M., Päivärinne, J., Nieminen, J., Marjomäki, V., Heino, J., White, D.J.
Cited in: 2 Publications (2012–2016)
Related Software: MeVisLab; VirtualGL; Open Inventor; VizServer; N4itk; dcm4che; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX); Information and communication theory, circuits (94-XX)

CASTREAM

Software Authors:   Das, Sourav; Roychowdhury, Dipanwita
Cited in: 1 Publication (2014)
Related Software:
Main Fields: Computer science (68-XX)

CellMiner

Software Authors:   Reinhold WC, Sunshine M, Liu H, Varma S, Kohn KW, Morris J, Doroshow J, Pommier Y
Cited in: 1 Publication (2016)
Related Software: R; enetLTS; pense; robustHD; Galaxy; ROAST; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

Centrifuge

Software Authors:   Daehwan Kim, Li Song, Florian P Breitwieser, Steven L Salzberg
Cited in: 2 Publications (2022)
Related Software: metaFlye; AMBER; MaxBin; MetaBAT; oblr; Minimap2; …
Main Fields: Biology and other natural sciences (92-XX)

Change-O

Software Authors:   Namita T. Gupta; Jason A. Vander Heiden; Mohamed Uduman; Daniel Gadala-Maria; Gur Yaari; Steven H. Kleinstein
Cited in: 2 Publications (2019–2020)
Related Software: Alakazam; repgenHMM; OLGA; Ace; DeepTCR; SoDA2; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)

CoreSNP

Software Authors:   Guzzi, Pietro Hiram; Agapito, Giuseppe; Cannataro, Mario
Cited in: 2 Publications (2014–2019)
Related Software: Cloud4SNP; MapReduce
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

coseq

Software Authors:   Andrea Rau, Cathy Maugis-Rabusseau, Antoine Godichon-Baggioni
Cited in: 2 Publications (2019–2022)
Related Software: capushe; clusfind; recount; CAPUSHE; FunCC; fda (R)
Main Fields: Statistics (62-XX); Computer science (68-XX)

DMAP

Software Authors:   Stockwell, P. A., A. Chatterjee, E. J. Rodger. I. M. Morison
Cited in: 2 Publications (2016)
Related Software: MethylSig; HMM-Fisher; COHCAP; SAAP-RRBS; MOABS; HMM-DM; …
Main Fields: Probability theory and stochastic processes (60-XX); Biology and other natural sciences (92-XX)

DOSE

Software Authors:   Yu G, Wang L, Yan G, He Q
Cited in: 1 Publication (2016)
Related Software: GOSemSim; DisSetSim; clusterProfiler; MeSHSim; DaGO-Fun; DOSim; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

GBSA

Software Authors:   Benoukraf, T.; Wongphayak, S.; Hadi, L. H.; Wu, M.; Soong, R.
Cited in: 2 Publications (2016–2022)
Related Software: MethylSig; BSmooth; Minfi; fda (R); Bioconductor; Matlab
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

GeneNetwork

Software Authors:   Chia-Chin Wu, Hsuan-Cheng Huang, Hsueh-Fen Juan, Shui-Tein Chen
Cited in: 1 Publication (2014)
Related Software: DAVID; BNT
Main Fields: Biology and other natural sciences (92-XX)

GENEVESTIGATOR

Software Authors:   Zimmermann, P., Hirsch-Hoffmann, M., Hennig, L., Gruissem, W.
Cited in: 1 Publication (2011)
Related Software: TAHMMAnnot; mclust; NTAP; TileMap; EUGENE; R; …
Main Fields: Probability theory and stochastic processes (60-XX); Biology and other natural sciences (92-XX)

HTSanalyzeR

Software Authors:   Xin Wang, Camille Terfve, John C. Rose, Florian Markowetz
Cited in: 1 Publication (2022)
Related Software: Dendrix; ModuleDiscoverer; SigMod; DOMINO; NetSig; DIAMOnD; …
Main Fields: Biology and other natural sciences (92-XX)

httk

Software Authors:   John Wambaugh, Robert Pearce, Caroline Ring, Jimena Davis, Nisha Sipes, R. Woodrow Setzer
Cited in: 0 Publications
Related Software: MCSim; deSolve; R; pksensi; SAFE Toolbox; SALib; …
Main Fields:

iBitter-SCM

Software Authors:   P. Charoenkwan, Janchai Yana, N. Schaduangrat, C. Nantasenamat, M. Hasan, W. Shoombuatong
Cited in: 2 Publications (2021)
Related Software: Bastion3; mAHTPred; hCKSAAP_UbSite; WEKA; UCI-ml; iBLP; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

ITPN-perfbound

Software Authors:   Pacini Naumovich, Elina; Bernardi, Simona; Gribaudo, Marco
Cited in: 1 Publication (2021)
Related Software:
Main Fields: Operations research, mathematical programming (90-XX); Systems theory; control (93-XX)

JProGO

Software Authors:   Maurice Scheer, Frank Klawonn, Richard Münch, Andreas Grote, Karsten Hiller, Claudia Choi, Ina Koch, Max Schobert, Elisabeth Härtig, Ulrich Klages, Dieter Jahn
Cited in: 1 Publication (2011)
Related Software: MrBayes; MAVisto; ViennaRNA; tYNA; PhyNav; KnotSeeker; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

Lep-MAP

Software Authors:   Rastas P, Paulin L, Hanski I, Lehtonen R, Auvinen P
Cited in: 0 Publications
Related Software: R; JoinMap; ICIMapping; onemap; MAPMAKER; qtl; …
Main Fields:

MetNet

Software Authors:   Wurtele E, Li J, Diao L, Zhang H, Foster C, Fatland B, Dickerson J, Brown A, Cox Z, Cook D, Lee E, Hofmann H
Cited in: 0 Publications
Related Software: Cytoscape; Bioconductor; R; rattle; iSPlot; GTK+; …
Main Fields:

MULTICOM

Software Authors:   Zheng Wang; Jesse Eickholt; Jianlin Cheng
Cited in: 1 Publication (2014)
Related Software: FT-COMAR; AAindex; BLAST; PSI-BLAST; I-TASSER; NNcon; …
Main Fields: Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

MuPlex

Software Authors:   Rachlin, J.; Ding, C.; Cantor, C.; Kasif, S.
Cited in: 1 Publication (2019)
Related Software: R
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

P3S

Software Authors:   Partha Pal; Greg Lauer; Joud Khoury; Nick Hoff; Joe Loyall
Cited in: 1 Publication (2018)
Related Software: Cassandra; HBase; SNOBOL; GraphBLAS; moleculaRnetworks; GeneRank; …
Main Fields: Computer science (68-XX)

PFAST

Software Authors:   Irani, S.A.; Zhang, H.; Zhou, J.; Huang, H.; Udai, T.K.; Subramanian, S.
Cited in: 2 Publications (2000–2005)
Related Software:
Main Fields: Operations research, mathematical programming (90-XX)

PLNseq

Software Authors:   Zhang, H.; Xu, J.; Jiang, N.; Hu, X.; Luo, Z.
Cited in: 2 Publications (2020–2022)
Related Software: R; igraph; BDgraph; HeteroGGM; BLGGM; maSigPro; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

pRESTO

Software Authors:   Vander Heiden JA, Yaari G, Uduman M et al
Cited in: 2 Publications (2017–2020)
Related Software: SoDA2; repgenHMM; OLGA; Alakazam; Change-O; Ace; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

PyARPES

Software Authors:   Stansbury, C.; Lanzara, A.
Cited in: 0 Publications
Related Software: NumPy; Python; LMFIT; ASE; pymatgen; xarray; …
Main Fields:

QuartetS

Software Authors:   Yu, C.; Zavaljevski, N.; Desai, V.; Reifman, J.
Cited in: 2 Publications (2019–2020)
Related Software: OMA; OrthoGNC; Proteinortho
Main Fields: Combinatorics (05-XX); Biology and other natural sciences (92-XX)

QuPath

Software Authors:   P. Bankhead et al .
Cited in: 1 Publication (2020)
Related Software: PanNuke; HoVer-Net; HACT-Net; Grad-CAM; DGL; GNNExplainer; …
Main Fields: Computer science (68-XX)