×

Found 42 Software Packages (Results 1–42)

moveHMM

Software Authors:   Theo Michelot, Roland Langrock, Toby Patterson, Eric Rexstad
Cited in: 14 Publications (2016–2022)
Related Software: R; momentuHMM; circular; ctmm; crawl; CircStats; …
Main Fields:

minepy

Software Authors:   Albanese, D., Filosi, M., Visintainer, R.
Cited in: 4 Publications (2016–2020)
Related Software: minerva; R; Hmisc; Matlab; Python; PhysioToolkit; …
Main Fields:

EoN

Software Authors:   Joel C. Miller, Tony TIng
Cited in: 2 Publications (2017–2019)
Related Software: Python; EpiModel; SciPy; Graph-tool; epydemic; R; …
Main Fields:

libRoadRunner

Software Authors:   Somogyi, E. T. et al.
Cited in: 1 Publication (2017)
Related Software: tellurium; Python; SUNDIALS; COPASI; SBW; LibSBMLSim; …
Main Fields:

PEtab

Software Authors:   Leonard Schmiester, Yannik Schälte, Frank T. Bergmann, Tacio Camba, Erika Dudkin, Janine Egert, Fabian Fröhlich, Lara Fuhrmann, Adrian L. Hauber, Svenja Kemmer, Polina Lakrisenko, Carolin Loos, Simon Merkt, Wolfgang Müller, Dilan Pathirana, Elba Raimúndez, Lukas Refisch, Marcus Rosenblatt, Paul L. Stapor, Philipp Städter, Dantong Wang, Franz-Georg Wieland, Julio R. Banga, Jens Timmer, Alejandro F. Villaverde, Sven Sahle, Clemens Kreutz, Jan Hasenauer, Daniel Weindl
Cited in: 1 Publication (2020)
Related Software: Data2Dynamics; COPASI; AMIGO; pyPESTO; Antimony; Python; …
Main Fields:

CplexA

Software Authors:   J. M. G. Vilar, L. Saiz
Cited in: 2 Publications (2016–2019)
Related Software: Cellerator; STOCHSIM; Matlab; Python; Mathematica; RegulonDB
Main Fields:

PyBioNetFit

Software Authors:   Mitra, ED; Suderman, R.; Colvin, J.; Ionkov, A.; Hu, A.; Sauro, HM; Posner, RG; Hlavacek, WS
Cited in: 1 Publication (2020)
Related Software: COPASI; AMIGO; tellurium; MEIGO; BioNetGen; Data2Dynamics; …
Main Fields:

adjclust

Software Authors:   Christophe Ambroise, Shubham Chaturvedi, Alia Dehman, Michel Koskas, Pierre Neuvial, Guillem Rigaill, Nathalie Vialaneix
Cited in: 1 Publication (2021)
Related Software: CONISS; ClustGeo; capushe; Matrix; HiTC; snpStats; …
Main Fields:

amt

Software Authors:   Johannes Signer
Cited in: 0 Publications
Related Software: ctmm; R; moveHMM; kftrack; ukfsst; kfsst; …
Main Fields:

BioSimulator.jl

Software Authors:   Alfonso Landeros, Timothy Stutz, Kevin L. Keys, Alexander Alekseyenko, Janet S. Sinsheimer, Kenneth Lange, Mary Sehl
Cited in: 0 Publications
Related Software: DifferentialEquations.jl; Julia; DiffEqFlux; Flux; GR Framework; epinet; …
Main Fields:

CoMEt

Software Authors:   Mark D.M. Leiserson, Hsin-Ta Wu, Fabio Vandin, Benjamin J. Raphael
Cited in: 0 Publications
Related Software: cometExactTest
Main Fields:

heatmaply

Software Authors:   Tal Galili
Cited in: 1 Publication (2018)
Related Software: ggplot2; ComplexHeatmap; Superheat; pheatmap; R; shiny; …
Main Fields:

PyRoss

Software Authors:   R. Adhikari, Austen Bolitho, Fernando Caballero, Michael E. Cates, Jakub Dolezal, Timothy Ekeh, Jules Guioth, Robert L. Jack, Julian Kappler, Lukas Kikuchi, Hideki Kobayashi, Yuting I. Li, Joseph D. Peterson, Patrick Pietzonka, Benjamin Remez, Paul B. Rohrbach, Rajesh Singh, Günther Turk
Cited in: 1 Publication (2021)
Related Software: JAX; Nestle; SciPy; Odespy; Autograd; NumPy; …
Main Fields:

aPCoA

Software Authors:   Yushu Shi
Cited in: 0 Publications
Related Software: mvabund; shiny; R
Main Fields:

BIDEAL

Software Authors:   Nishchal K. Verma, T. Sharma, S. Dixit, P. Agrawal, S. Sengupta, V. Singh
Cited in: 0 Publications
Related Software: BiVisu; BicNET; EXPANDER; BicOverlapper; FABIA; bibench; …
Main Fields:

cgmquantify

Software Authors:   Maria Henriquez; Brinnae Bent
Cited in: 0 Publications
Related Software: CGManalyzer; cgmanalysis; Python; R
Main Fields:

DGL-LifeSci

Software Authors:   Mufei Li, Jinjing Zhou, Jiajing Hu, Wenxuan Fan, Yangkang Zhang, Yaxin Gu, George Karypis
Cited in: 0 Publications
Related Software: MoleculeNet; Chainer; ZINC; PiNN; Chainer Chemistry; DeepChem; …
Main Fields:

DyPy

Software Authors:   Anjalika Nande, Andrew Ferdowsian, Eric Lubin, Erez Yoeli, Martin Nowak
Cited in: 0 Publications
Related Software: Python
Main Fields:

ezcox

Software Authors:   Shixiang Wang
Cited in: 0 Publications
Related Software: survival; R
Main Fields:

gibbonR

Software Authors:   Dena J. Clink, Holger Klinck
Cited in: 0 Publications
Related Software: ggplot2; seewave; signal; gstat; e1071; tuneR; …
Main Fields:

GuidedSparseKmeans

Software Authors:   Lingsong Meng, Dorina Avram, George Tseng, Zhiguang Huo
Cited in: 0 Publications
Related Software: GitHub; R
Main Fields:

IntLIM

Software Authors:   Jalal K. Siddiqui, Elizabeth Baskin, Mingrui Liu, Carmen Z. Cantemir-Stone, Bofei Zhang, Russell Bonneville, Joseph P. McElroy, Kevin R. Coombes, Ewy A. Mathé
Cited in: 0 Publications
Related Software: plotly; Highcharter; shiny; OOMPA; hgu133plus2.db; HMDB; …
Main Fields:

ModelFactory

Software Authors:   Manish Sreenivasa; Monika Harant
Cited in: 0 Publications
Related Software: Puppeteer; Simox; Simbody; RBDL; Matlab; Octave; …
Main Fields:

MolGraph

Software Authors:   Alexander Kensert, Gert Desmet, Deirdre Cabooter
Cited in: 0 Publications
Related Software: MolGAN; Retip; MoleculeNet; PyTorch; DGL; Keras; …
Main Fields:

MomentClosure.jl

Software Authors:   Augustinas Sukys, Ramon Grima
Cited in: 0 Publications
Related Software: Catalyst.jl; MEANS; CERENA; ModelingToolkit.jl; Compartor; DifferentialEquations.jl; …
Main Fields:

Pline

Software Authors:   Andres Veidenberg, Ari Löytynoja
Cited in: 0 Publications
Related Software: Electron; PAML; Taverna; Wasabi; UGENE; Samtools; …
Main Fields:

PolyLinkR

Software Authors:   Raymond Tobler, Angad Johar, Christian Huber, Yassine Souilmi
Cited in: 0 Publications
Related Software: KEGG; biomaRt; R
Main Fields:

PyPhi

Software Authors:   William G. P. Mayner; William Marshall; Larissa Albantakis; Graham Findlay; Robert Marchman; Giulio Tononi
Cited in: 0 Publications
Related Software: Python; NumPy
Main Fields:

Pyrcca

Software Authors:   Natalia Y. Bilenko, Jack L. Gallant
Cited in: 0 Publications
Related Software: PyKCCA; Scikit; Python
Main Fields:

PySEAL

Software Authors:   Alexander J. Titus, Shashwat Kishore, Todd Stavish, Stephanie M. Rogers, Karl Ni
Cited in: 0 Publications
Related Software: GitHub; Python; SEAL
Main Fields:

pyssam

Software Authors:   Josh Williams, Ali Ozel, Uwe Wolfram
Cited in: 0 Publications
Related Software: Statismo; ShapeWorks; Python
Main Fields:

qqconf

Software Authors:   Eric Weine, Mary Sara McPeek, Mark Abney
Cited in: 0 Publications
Related Software: qqplotr; R
Main Fields:

r.jive

Software Authors:   Michael J. O'Connell; Eric F. Lock
Cited in: 0 Publications
Related Software: R; sva; CRAN
Main Fields:

RNAglib

Software Authors:   Vincent Mallet, Carlos Oliver, Jonathan Broadbent, William L. Hamilton, Jérôme Waldispühl
Cited in: 0 Publications
Related Software: DGL; FR3D; PyTorch; VeRNAl; 3DNA; RNAMotifContrast; …
Main Fields:

RNeXML

Software Authors:   Carl Boettiger, Scott Chamberlain, Rutger Vos, Hilmar Lapp
Cited in: 0 Publications
Related Software: phytools; TreeBASE; GEIGER; ape; phylobase; XML; …
Main Fields:

rolldown

Software Authors:   Pablo Rodríguez-Sánchez, Egbert H. van Nes, Marten Scheffer
Cited in: 0 Publications
Related Software: R
Main Fields:

SBML2Julia

Software Authors:   Paul F. Lang, Sungho Shin, Victor M. Zavala
Cited in: 0 Publications
Related Software: PEtab; pyPESTO; Data2Dynamics; HSL; JuMP; AMIGO; …
Main Fields:

SBMLDiagrams

Software Authors:   Jin Xu, Jessie Jiang, Herbert M. Sauro
Cited in: 0 Publications
Related Software: libSBML; SimpleSBML; Python
Main Fields:

SSNdesign

Software Authors:   Alan R. Pearse, James M. McGree, Nicholas A. Som, Catherine Leigh, Jay M. Ver Hoef, Paul Maxwell, Erin E. Peterson
Cited in: 0 Publications
Related Software: SSN; geospt; spsurvey; acebayes; R
Main Fields:

theft

Software Authors:   Trent Henderson, Annie Bryant
Cited in: 0 Publications
Related Software: tidyverse; t-SNE; FFORMA; Rcatch22; tsfresh; TSFEL; …
Main Fields:

WExT

Software Authors:   Mark D.M. Leiserson, Matthew A. Reyna, Benjamin J. Raphael
Cited in: 0 Publications
Related Software: minpack; SciPy
Main Fields:

wtest

Software Authors:   Rui Sun, Billy Chang, Benny Chung-Ying Zee, Maggie Haitian Wang
Cited in: 0 Publications
Related Software: CRAN; R
Main Fields: